RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 FYCO1Q9BQS8 1478 aa15.87■□□□□ 0.13
SCFD1-215ENST00000555259 ADGBQ8N7X0 1667 aa15.87■□□□□ 0.13
SCFD1-215ENST00000555259 TNRQ92752 1358 aa15.86■□□□□ 0.13
SCFD1-215ENST00000555259 VWDEQ8N2E2 1590 aa15.86■□□□□ 0.13
SCFD1-215ENST00000555259 FBXO31Q5XUX0 539 aaPredicted RBP15.85■□□□□ 0.13
SCFD1-215ENST00000555259 ANKLE2Q86XL3 938 aa15.84■□□□□ 0.13
SCFD1-215ENST00000555259 CCNB3Q8WWL7 1395 aa15.84■□□□□ 0.13
SCFD1-215ENST00000555259 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.83■□□□□ 0.12
SCFD1-215ENST00000555259 PZPP20742 1482 aa15.82■□□□□ 0.12
SCFD1-215ENST00000555259 NPHP4O75161 1426 aaPredicted RBP15.81■□□□□ 0.12
SCFD1-215ENST00000555259 DHX29Q7Z478 1369 aaKnown RBP15.81■□□□□ 0.12
SCFD1-215ENST00000555259 MED14O60244 1454 aa15.81■□□□□ 0.12
SCFD1-215ENST00000555259 POTEDQ86YR6 584 aa15.8■□□□□ 0.12
SCFD1-215ENST00000555259 THEMISQ8N1K5 641 aaPredicted RBP15.8■□□□□ 0.12
SCFD1-215ENST00000555259 MBD5Q9P267 1494 aa15.8■□□□□ 0.12
SCFD1-215ENST00000555259 ZNF644Q9H582 1327 aaPredicted RBP15.8■□□□□ 0.12
SCFD1-215ENST00000555259 RTEL1-TNFRSF6BF6WH68 1400 aa15.8■□□□□ 0.12
SCFD1-215ENST00000555259 KDM5DQ9BY66 1539 aa15.8■□□□□ 0.12
SCFD1-215ENST00000555259 DEPDC5O75140 1603 aa15.79■□□□□ 0.12
SCFD1-215ENST00000555259 KIF3BO15066 747 aa15.79■□□□□ 0.12
SCFD1-215ENST00000555259 UGGT1Q9NYU2 1555 aa15.78■□□□□ 0.12
SCFD1-215ENST00000555259 NLRP1Q9C000 1473 aa15.78■□□□□ 0.12
SCFD1-215ENST00000555259 FAM135AQ9P2D6 1515 aa15.78■□□□□ 0.12
SCFD1-215ENST00000555259 MIA2Q96PC5 1412 aa15.78■□□□□ 0.12
SCFD1-215ENST00000555259 LRRC7Q96NW7 1537 aa15.77■□□□□ 0.12
SCFD1-215ENST00000555259 RGS17Q9UGC6 210 aaPredicted RBP15.76■□□□□ 0.11
SCFD1-215ENST00000555259 WASHC2CQ9Y4E1 1318 aa15.76■□□□□ 0.11
SCFD1-215ENST00000555259 IQGAP1P46940 1657 aa15.76■□□□□ 0.11
SCFD1-215ENST00000555259 MTUS2Q5JR59 1369 aa15.76■□□□□ 0.11
SCFD1-215ENST00000555259 STRCP1A6NGW2 1772 aa15.75■□□□□ 0.11
SCFD1-215ENST00000555259 RNF17Q9BXT8 1623 aaKnown RBP15.75■□□□□ 0.11
SCFD1-215ENST00000555259 TIAM1Q13009 1591 aa15.75■□□□□ 0.11
SCFD1-215ENST00000555259 SYNMO15061 1565 aa15.73■□□□□ 0.11
SCFD1-215ENST00000555259 CCDC141Q6ZP82 1450 aa15.7■□□□□ 0.1
SCFD1-215ENST00000555259 EHBP1L1Q8N3D4 1523 aa15.67■□□□□ 0.1
SCFD1-215ENST00000555259 ZC3H13Q5T200 1668 aaKnown RBP15.66■□□□□ 0.1
SCFD1-215ENST00000555259 CEP162Q5TB80 1403 aa15.66■□□□□ 0.1
SCFD1-215ENST00000555259 RSPH4AQ5TD94 716 aa15.65■□□□□ 0.1
SCFD1-215ENST00000555259 POTEAQ6S8J7 498 aa15.65■□□□□ 0.1
SCFD1-215ENST00000555259 CAMSAP2Q08AD1 1489 aa15.64■□□□□ 0.09
SCFD1-215ENST00000555259 ABCC3O15438 1527 aa15.63■□□□□ 0.09
SCFD1-215ENST00000555259 ERVK-7P63135 1459 aa15.63■□□□□ 0.09
SCFD1-215ENST00000555259 SCAF11Q99590 1463 aaKnown RBP15.63■□□□□ 0.09
SCFD1-215ENST00000555259 XIRP1Q702N8 1843 aaKnown RBP15.61■□□□□ 0.09
SCFD1-215ENST00000555259 FAM135BQ49AJ0 1406 aa15.61■□□□□ 0.09
SCFD1-215ENST00000555259 UBR1Q8IWV7 1749 aa15.6■□□□□ 0.09
SCFD1-215ENST00000555259 LTKP29376 864 aa15.6■□□□□ 0.09
SCFD1-215ENST00000555259 TSPY4P0CV99 314 aa15.59■□□□□ 0.09
SCFD1-215ENST00000555259 TSPY10P0CW01 314 aa15.59■□□□□ 0.09
SCFD1-215ENST00000555259 NCOA2Q15596 1464 aa15.59■□□□□ 0.09
SCFD1-215ENST00000555259 ARHGEF5Q12774 1597 aa15.58■□□□□ 0.09
SCFD1-215ENST00000555259 ARHGAP23Q9P227 1491 aa15.58■□□□□ 0.09
SCFD1-215ENST00000555259 TXNDC2Q86VQ3 553 aa15.58■□□□□ 0.09
SCFD1-215ENST00000555259 SLIT1O75093 1534 aa15.57■□□□□ 0.08
SCFD1-215ENST00000555259 MROH1Q8NDA8 1641 aa15.56■□□□□ 0.08
SCFD1-215ENST00000555259 EIF2AK4Q9P2K8 1649 aaKnown RBP15.54■□□□□ 0.08
SCFD1-215ENST00000555259 TMEM94Q12767 1356 aa15.54■□□□□ 0.08
SCFD1-215ENST00000555259 EID1Q9Y6B2 187 aa15.53■□□□□ 0.08
SCFD1-215ENST00000555259 SETD1AO15047 1707 aaKnown RBP15.53■□□□□ 0.08
SCFD1-215ENST00000555259 ROBO1Q9Y6N7 1651 aa15.53■□□□□ 0.08
SCFD1-215ENST00000555259 CFAP65Q6ZU64 1925 aaKnown RBP15.53■□□□□ 0.08
SCFD1-215ENST00000555259 CEP152O94986 1710 aa15.53■□□□□ 0.08
SCFD1-215ENST00000555259 MAST1Q9Y2H9 1570 aa15.52■□□□□ 0.07
SCFD1-215ENST00000555259 MAP3K1Q13233 1512 aa15.51■□□□□ 0.07
SCFD1-215ENST00000555259 TMEM2Q9UHN6 1383 aa15.5■□□□□ 0.07
SCFD1-215ENST00000555259 KCNA6P17658 529 aa15.49■□□□□ 0.07
SCFD1-215ENST00000555259 ARHGAP31Q2M1Z3 1444 aa15.49■□□□□ 0.07
SCFD1-215ENST00000555259 LRRC9Q6ZRR7 1453 aa15.49■□□□□ 0.07
SCFD1-215ENST00000555259 RBM33Q96EV2 1170 aaKnown RBP15.48■□□□□ 0.07
SCFD1-215ENST00000555259 PIK3C2BO00750 1634 aa15.47■□□□□ 0.07
SCFD1-215ENST00000555259 SRCAPQ6ZRS2 3230 aa15.47■□□□□ 0.07
SCFD1-215ENST00000555259 PROSER2Q86WR7 435 aaPredicted RBP15.47■□□□□ 0.07
SCFD1-215ENST00000555259 PRDM15P57071 1507 aaPredicted RBP15.46■□□□□ 0.07
SCFD1-215ENST00000555259 JCADQ9P266 1359 aa15.46■□□□□ 0.06
SCFD1-215ENST00000555259 DUOX2Q9NRD8 1548 aa15.45■□□□□ 0.06
SCFD1-215ENST00000555259 SLC26A8Q96RN1 970 aa15.45■□□□□ 0.06
SCFD1-215ENST00000555259 STAG3Q9UJ98 1225 aa15.45■□□□□ 0.06
SCFD1-215ENST00000555259 TET3O43151 1660 aa15.44■□□□□ 0.06
SCFD1-215ENST00000555259 EFCAB6Q5THR3 1501 aa15.43■□□□□ 0.06
SCFD1-215ENST00000555259 PHLPP1O60346 1717 aa15.43■□□□□ 0.06
SCFD1-215ENST00000555259 NKTRP30414 1462 aaKnown RBP15.43■□□□□ 0.06
SCFD1-215ENST00000555259 UPF1Q92900 1129 aaKnown RBP eCLIP15.43■□□□□ 0.06
SCFD1-215ENST00000555259 MSH6P52701 1360 aa15.43■□□□□ 0.06
SCFD1-215ENST00000555259 SLAIN2Q9P270 581 aa15.42■□□□□ 0.06
SCFD1-215ENST00000555259 NWD1Q149M9 1564 aa15.42■□□□□ 0.06
SCFD1-215ENST00000555259 KDM5AP29375 1690 aaKnown RBP15.42■□□□□ 0.06
SCFD1-215ENST00000555259 IDI1Q13907 227 aa15.41■□□□□ 0.06
SCFD1-215ENST00000555259 KIF15Q9NS87 1388 aa15.4■□□□□ 0.06
SCFD1-215ENST00000555259 ERBINQ96RT1 1412 aa15.39■□□□□ 0.05
SCFD1-215ENST00000555259 LRP6O75581 1613 aa15.39■□□□□ 0.05
SCFD1-215ENST00000555259 COL16A1Q07092 1604 aaPredicted RBP15.39■□□□□ 0.05
SCFD1-215ENST00000555259 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.39■□□□□ 0.052e-7■□□□□ 10.1
SCFD1-215ENST00000555259 MYOM3Q5VTT5 1437 aa15.38■□□□□ 0.05
SCFD1-215ENST00000555259 ZNF772Q68DY9 489 aaPredicted RBP15.38■□□□□ 0.05
SCFD1-215ENST00000555259 TRIM52Q96A61 297 aa15.38■□□□□ 0.05
SCFD1-215ENST00000555259 SPATA31A6Q5VVP1 1343 aa15.37■□□□□ 0.05
SCFD1-215ENST00000555259 FGD6Q6ZV73 1430 aa15.36■□□□□ 0.05
SCFD1-215ENST00000555259 MEX3CQ5U5Q3 659 aaKnown RBP15.36■□□□□ 0.05
SCFD1-215ENST00000555259 RRP7BPQ9NSQ0 103 aa15.36■□□□□ 0.05
SCFD1-215ENST00000555259 KANK1Q14678 1352 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 245 ms