RNA–Protein interactions for RNA: ENST00000554508.5

ACTN1-213, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-213ENST00000554508 ABCC5O15440 1437 aa13.54□□□□□ -0.24
ACTN1-213ENST00000554508 SHANK2Q9UPX8 1470 aa13.54□□□□□ -0.24
ACTN1-213ENST00000554508 KDM5DQ9BY66 1539 aa13.54□□□□□ -0.24
ACTN1-213ENST00000554508 DNMT1P26358 1616 aaKnown RBP13.53□□□□□ -0.24
ACTN1-213ENST00000554508 ILDR1Q86SU0 546 aaPredicted RBP13.53□□□□□ -0.24
ACTN1-213ENST00000554508 DUOX2Q9NRD8 1548 aa13.53□□□□□ -0.24
ACTN1-213ENST00000554508 RNF17Q9BXT8 1623 aaKnown RBP13.53□□□□□ -0.24
ACTN1-213ENST00000554508 DAPK1P53355 1430 aa13.52□□□□□ -0.25
ACTN1-213ENST00000554508 ZNF142P52746 1687 aaPredicted RBP13.51□□□□□ -0.25
ACTN1-213ENST00000554508 MYO3AQ8NEV4 1616 aa13.5□□□□□ -0.25
ACTN1-213ENST00000554508 ZC3H13Q5T200 1668 aaKnown RBP13.5□□□□□ -0.25
ACTN1-213ENST00000554508 PZPP20742 1482 aa13.49□□□□□ -0.25
ACTN1-213ENST00000554508 KIF15Q9NS87 1388 aa13.49□□□□□ -0.25
ACTN1-213ENST00000554508 PTPRTO14522 1441 aa13.48□□□□□ -0.25
ACTN1-213ENST00000554508 ERBINQ96RT1 1412 aa13.48□□□□□ -0.25
ACTN1-213ENST00000554508 RRP7BPQ9NSQ0 103 aa13.48□□□□□ -0.25
ACTN1-213ENST00000554508 CAMSAP1Q5T5Y3 1602 aa13.48□□□□□ -0.25
ACTN1-213ENST00000554508 CFAP65Q6ZU64 1925 aaKnown RBP13.48□□□□□ -0.25
ACTN1-213ENST00000554508 CEP170BQ9Y4F5 1589 aaPredicted RBP13.48□□□□□ -0.25
ACTN1-213ENST00000554508 NCOA1Q15788 1441 aa13.47□□□□□ -0.25
ACTN1-213ENST00000554508 ANKRD30AQ9BXX3 1397 aa13.47□□□□□ -0.25
ACTN1-213ENST00000554508 FBXO31Q5XUX0 539 aaPredicted RBP13.47□□□□□ -0.25
ACTN1-213ENST00000554508 FBXO41Q8TF61 875 aa13.47□□□□□ -0.25
ACTN1-213ENST00000554508 TNRQ92752 1358 aa13.46□□□□□ -0.25
ACTN1-213ENST00000554508 ABCC3O15438 1527 aa13.46□□□□□ -0.25
ACTN1-213ENST00000554508 FAM50AQ14320 339 aaKnown RBP13.46□□□□□ -0.25
ACTN1-213ENST00000554508 CHIC2Q9UKJ5 165 aa13.46□□□□□ -0.25
ACTN1-213ENST00000554508 A2ML1A8K2U0 1454 aa13.46□□□□□ -0.25
ACTN1-213ENST00000554508 MROH1Q8NDA8 1641 aa13.46□□□□□ -0.26
ACTN1-213ENST00000554508 PLA2R1Q13018 1463 aa13.45□□□□□ -0.26
ACTN1-213ENST00000554508 CEP152O94986 1710 aa13.44□□□□□ -0.26
ACTN1-213ENST00000554508 PKD2Q13563 968 aa13.44□□□□□ -0.26
ACTN1-213ENST00000554508 ADGRL2O95490 1459 aa13.43□□□□□ -0.26
ACTN1-213ENST00000554508 DEPDC5O75140 1603 aa13.43□□□□□ -0.26
ACTN1-213ENST00000554508 CERKQ8TCT0 537 aa13.43□□□□□ -0.26
ACTN1-213ENST00000554508 PRDM15P57071 1507 aaPredicted RBP13.43□□□□□ -0.26
ACTN1-213ENST00000554508 NLRP1Q9C000 1473 aa13.42□□□□□ -0.26
ACTN1-213ENST00000554508 KANK1Q14678 1352 aa13.42□□□□□ -0.26
ACTN1-213ENST00000554508 NCKAP5LQ9HCH0 1330 aa13.41□□□□□ -0.26
ACTN1-213ENST00000554508 THEMISQ8N1K5 641 aaPredicted RBP13.41□□□□□ -0.26
ACTN1-213ENST00000554508 SPATA31D1Q6ZQQ2 1576 aa13.41□□□□□ -0.26
ACTN1-213ENST00000554508 ARHGAP31Q2M1Z3 1444 aa13.4□□□□□ -0.26
ACTN1-213ENST00000554508 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.4□□□□□ -0.261e-6■■□□□ 11.5
ACTN1-213ENST00000554508 ERVK-7P63135 1459 aa13.39□□□□□ -0.27
ACTN1-213ENST00000554508 POLR1AO95602 1720 aaPredicted RBP13.39□□□□□ -0.27
ACTN1-213ENST00000554508 UGGT1Q9NYU2 1555 aa13.38□□□□□ -0.27
ACTN1-213ENST00000554508 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.38□□□□□ -0.27
ACTN1-213ENST00000554508 LMTK2Q8IWU2 1503 aa13.37□□□□□ -0.27
ACTN1-213ENST00000554508 ANKRD50Q9ULJ7 1429 aa13.37□□□□□ -0.27
ACTN1-213ENST00000554508 VWDEQ8N2E2 1590 aa13.37□□□□□ -0.27
ACTN1-213ENST00000554508 ANKLE2Q86XL3 938 aa13.36□□□□□ -0.27
ACTN1-213ENST00000554508 PPARGC1BQ86YN6 1023 aaKnown RBP13.36□□□□□ -0.27
ACTN1-213ENST00000554508 LTBP4Q8N2S1 1624 aa13.35□□□□□ -0.27
ACTN1-213ENST00000554508 ROCK1Q13464 1354 aa13.35□□□□□ -0.27
ACTN1-213ENST00000554508 UBR1Q8IWV7 1749 aa13.33□□□□□ -0.27
ACTN1-213ENST00000554508 IQSEC2Q5JU85 1478 aa13.33□□□□□ -0.28
ACTN1-213ENST00000554508 NEURL4Q96JN8 1562 aa13.32□□□□□ -0.28
ACTN1-213ENST00000554508 MED14O60244 1454 aa13.31□□□□□ -0.28
ACTN1-213ENST00000554508 EFCAB6Q5THR3 1501 aa13.3□□□□□ -0.28
ACTN1-213ENST00000554508 ITGAEP38570 1179 aa13.3□□□□□ -0.28
ACTN1-213ENST00000554508 ZNF335Q9H4Z2 1342 aaPredicted RBP13.3□□□□□ -0.28
ACTN1-213ENST00000554508 KDM5AP29375 1690 aaKnown RBP13.3□□□□□ -0.28
ACTN1-213ENST00000554508 UNC13BO14795 1591 aa13.29□□□□□ -0.28
ACTN1-213ENST00000554508 TET3O43151 1660 aa13.29□□□□□ -0.28
ACTN1-213ENST00000554508 GCC2Q8IWJ2 1684 aa13.29□□□□□ -0.28
ACTN1-213ENST00000554508 NPHP4O75161 1426 aaPredicted RBP13.29□□□□□ -0.28
ACTN1-213ENST00000554508 RRBP1Q9P2E9 1410 aaKnown RBP13.29□□□□□ -0.28
ACTN1-213ENST00000554508 RPRD2Q5VT52 1461 aaKnown RBP13.29□□□□□ -0.28
ACTN1-213ENST00000554508 PIK3C2BO00750 1634 aa13.28□□□□□ -0.28
ACTN1-213ENST00000554508 IQGAP1P46940 1657 aa13.28□□□□□ -0.28
ACTN1-213ENST00000554508 NOS1P29475 1434 aa13.28□□□□□ -0.28
ACTN1-213ENST00000554508 IDI1Q13907 227 aa13.27□□□□□ -0.29
ACTN1-213ENST00000554508 SLC52A1Q9NWF4 448 aa13.27□□□□□ -0.29
ACTN1-213ENST00000554508 STAG3Q9UJ98 1225 aa13.27□□□□□ -0.29
ACTN1-213ENST00000554508 SLIT1O75093 1534 aa13.27□□□□□ -0.29
ACTN1-213ENST00000554508 SYNMO15061 1565 aa13.26□□□□□ -0.29
ACTN1-213ENST00000554508 ARHGAP23Q9P227 1491 aa13.26□□□□□ -0.29
ACTN1-213ENST00000554508 EID1Q9Y6B2 187 aa13.26□□□□□ -0.29
ACTN1-213ENST00000554508 IQGAP3Q86VI3 1631 aa13.25□□□□□ -0.29
ACTN1-213ENST00000554508 TXNDC2Q86VQ3 553 aa13.25□□□□□ -0.29
ACTN1-213ENST00000554508 CPS1P31327 1500 aa13.24□□□□□ -0.29
ACTN1-213ENST00000554508 SCAF11Q99590 1463 aaKnown RBP13.24□□□□□ -0.29
ACTN1-213ENST00000554508 NUP155O75694 1391 aa13.23□□□□□ -0.29
ACTN1-213ENST00000554508 TMEM2Q9UHN6 1383 aa13.23□□□□□ -0.29
ACTN1-213ENST00000554508 LTKP29376 864 aa13.23□□□□□ -0.29
ACTN1-213ENST00000554508 E9PCH4 1651 aa13.23□□□□□ -0.29
ACTN1-213ENST00000554508 ADGRB3O60242 1522 aa13.21□□□□□ -0.29
ACTN1-213ENST00000554508 MYO5BQ9ULV0 1848 aa13.2□□□□□ -0.3
ACTN1-213ENST00000554508 UBAP1LF5GYI3 381 aa13.19□□□□□ -0.3
ACTN1-213ENST00000554508 HDGFP51858 240 aaKnown RBP13.19□□□□□ -0.3
ACTN1-213ENST00000554508 STRCP1A6NGW2 1772 aa13.18□□□□□ -0.3
ACTN1-213ENST00000554508 NAIPQ13075 1403 aa13.18□□□□□ -0.3
ACTN1-213ENST00000554508 TMEM131LA2VDJ0 1609 aa13.17□□□□□ -0.3
ACTN1-213ENST00000554508 TOM1O60784 492 aa13.16□□□□□ -0.3
ACTN1-213ENST00000554508 SPHKAPQ2M3C7 1700 aa13.15□□□□□ -0.3
ACTN1-213ENST00000554508 HFM1A2PYH4 1435 aa13.14□□□□□ -0.31
ACTN1-213ENST00000554508 CHGAP10645 457 aaKnown RBP13.14□□□□□ -0.31
ACTN1-213ENST00000554508 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.14□□□□□ -0.31
ACTN1-213ENST00000554508 ZFYVE9O95405 1425 aa13.13□□□□□ -0.31
ACTN1-213ENST00000554508 LRRC7Q96NW7 1537 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms