RNA–Protein interactions for RNA: ENST00000554508.5

ACTN1-213, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-213ENST00000554508 NISCHQ9Y2I1 1504 aa21.47■■□□□ 1.03
ACTN1-213ENST00000554508 CCDC180Q9P1Z9 1646 aa19.2■□□□□ 0.66
ACTN1-213ENST00000554508 ABCC9O60706 1549 aa18.91■□□□□ 0.62
ACTN1-213ENST00000554508 RB1CC1Q8TDY2 1594 aa18.16■□□□□ 0.5
ACTN1-213ENST00000554508 NACADO15069 1562 aa18.09■□□□□ 0.49
ACTN1-213ENST00000554508 DCAF8L2P0C7V8 631 aa18.01■□□□□ 0.47
ACTN1-213ENST00000554508 MYO15BQ96JP2 1530 aa17.93■□□□□ 0.46
ACTN1-213ENST00000554508 ZCCHC6Q5VYS8 1495 aaKnown RBP17.82■□□□□ 0.44
ACTN1-213ENST00000554508 DCAF1Q9Y4B6 1507 aa17.78■□□□□ 0.44
ACTN1-213ENST00000554508 UNC13AQ9UPW8 1703 aa17.76■□□□□ 0.43
ACTN1-213ENST00000554508 PABPN1Q86U42 306 aaKnown RBP eCLIP17.64■□□□□ 0.41
ACTN1-213ENST00000554508 BICRAQ9NZM4 1560 aa17.59■□□□□ 0.41
ACTN1-213ENST00000554508 DNAJC5BQ9UF47 199 aa17.54■□□□□ 0.4
ACTN1-213ENST00000554508 SCRIBQ14160 1630 aa17.44■□□□□ 0.38
ACTN1-213ENST00000554508 SHROOM4Q9ULL8 1493 aa17.43■□□□□ 0.38
ACTN1-213ENST00000554508 EIF4G1Q04637 1599 aaKnown RBP17.14■□□□□ 0.33
ACTN1-213ENST00000554508 CC2D2AQ9P2K1 1620 aa17.13■□□□□ 0.33
ACTN1-213ENST00000554508 CECR2Q9BXF3 1484 aa17.04■□□□□ 0.32
ACTN1-213ENST00000554508 SMARCA4P51532 1647 aa16.7■□□□□ 0.26
ACTN1-213ENST00000554508 NCAPD3P42695 1498 aa16.69■□□□□ 0.26
ACTN1-213ENST00000554508 BAZ1AQ9NRL2 1556 aaPredicted RBP16.66■□□□□ 0.26
ACTN1-213ENST00000554508 SMARCA2P51531 1590 aa16.65■□□□□ 0.26
ACTN1-213ENST00000554508 ATAD2BQ9ULI0 1458 aa16.65■□□□□ 0.26
ACTN1-213ENST00000554508 HMGXB3Q12766 1538 aa16.58■□□□□ 0.24
ACTN1-213ENST00000554508 PEG3Q9GZU2 1588 aa16.55■□□□□ 0.24
ACTN1-213ENST00000554508 MROH2BQ7Z745 1585 aa16.51■□□□□ 0.23
ACTN1-213ENST00000554508 BAZ1BQ9UIG0 1483 aaKnown RBP16.5■□□□□ 0.23
ACTN1-213ENST00000554508 WIZO95785 1651 aa16.35■□□□□ 0.21
ACTN1-213ENST00000554508 ERCC6Q03468 1493 aa16.34■□□□□ 0.21
ACTN1-213ENST00000554508 NESP48681 1621 aa16.3■□□□□ 0.2
ACTN1-213ENST00000554508 LAMC3Q9Y6N6 1575 aa16.29■□□□□ 0.2
ACTN1-213ENST00000554508 RSF1Q96T23 1441 aaPredicted RBP16.27■□□□□ 0.19
ACTN1-213ENST00000554508 CUX2O14529 1486 aa16.25■□□□□ 0.19
ACTN1-213ENST00000554508 PDS5BQ9NTI5 1447 aa16.19■□□□□ 0.18
ACTN1-213ENST00000554508 CADPSQ9ULU8 1353 aa16.18■□□□□ 0.18
ACTN1-213ENST00000554508 TOP2AP11388 1531 aaKnown RBP16.16■□□□□ 0.18
ACTN1-213ENST00000554508 KIF21AQ7Z4S6 1674 aa16.15■□□□□ 0.18
ACTN1-213ENST00000554508 THOC2Q8NI27 1593 aaKnown RBP16.12■□□□□ 0.17
ACTN1-213ENST00000554508 CFTRP13569 1480 aa16.04■□□□□ 0.16
ACTN1-213ENST00000554508 MRC2Q9UBG0 1479 aa16.01■□□□□ 0.15
ACTN1-213ENST00000554508 CEP164Q9UPV0 1460 aa15.99■□□□□ 0.15
ACTN1-213ENST00000554508 DNAJC5Q9H3Z4 198 aa15.99■□□□□ 0.15
ACTN1-213ENST00000554508 FANCD2Q9BXW9 1451 aa15.98■□□□□ 0.15
ACTN1-213ENST00000554508 CCDC88BA6NC98 1476 aa15.97■□□□□ 0.15
ACTN1-213ENST00000554508 PRDM2Q13029 1718 aa15.97■□□□□ 0.15
ACTN1-213ENST00000554508 WDR62O43379 1518 aa15.96■□□□□ 0.15
ACTN1-213ENST00000554508 URB2Q14146 1524 aaKnown RBP15.83■□□□□ 0.12
ACTN1-213ENST00000554508 ABCC8Q09428 1581 aa15.75■□□□□ 0.11
ACTN1-213ENST00000554508 SUPT5HO00267 1087 aaKnown RBP15.71■□□□□ 0.11
ACTN1-213ENST00000554508 TOPBP1Q92547 1522 aa15.71■□□□□ 0.11
ACTN1-213ENST00000554508 DNMBPQ6XZF7 1577 aa15.69■□□□□ 0.1
ACTN1-213ENST00000554508 IFT140Q96RY7 1462 aa15.67■□□□□ 0.1
ACTN1-213ENST00000554508 ZNF608Q9ULD9 1512 aaPredicted RBP15.58■□□□□ 0.08
ACTN1-213ENST00000554508 OSCARQ8IYS5 282 aa15.56■□□□□ 0.08
ACTN1-213ENST00000554508 POLA1P09884 1462 aaPredicted RBP15.56■□□□□ 0.08
ACTN1-213ENST00000554508 TARBP1Q13395 1621 aaKnown RBP15.56■□□□□ 0.08
ACTN1-213ENST00000554508 EIF4G3O43432 1585 aaKnown RBP15.53■□□□□ 0.08
ACTN1-213ENST00000554508 CUX1P39880 1505 aa15.51■□□□□ 0.07
ACTN1-213ENST00000554508 SOGA1O94964 1423 aa15.51■□□□□ 0.07
ACTN1-213ENST00000554508 FGD5Q6ZNL6 1462 aa15.49■□□□□ 0.07
ACTN1-213ENST00000554508 RAD54L2Q9Y4B4 1467 aa15.49■□□□□ 0.07
ACTN1-213ENST00000554508 AQRO60306 1485 aaKnown RBP eCLIP15.48■□□□□ 0.071e-13■■■■■ 47.9
ACTN1-213ENST00000554508 WDR97A6NE52 1622 aa15.46■□□□□ 0.07
ACTN1-213ENST00000554508 TDRD9Q8NDG6 1382 aaKnown RBP15.42■□□□□ 0.06
ACTN1-213ENST00000554508 CHD1O14646 1710 aa15.4■□□□□ 0.06
ACTN1-213ENST00000554508 TOP2BQ02880 1626 aa15.35■□□□□ 0.05
ACTN1-213ENST00000554508 BIVM-ERCC5R4GMW8 1640 aa15.35■□□□□ 0.05
ACTN1-213ENST00000554508 WRNQ14191 1432 aaPredicted RBP eCLIP15.35■□□□□ 0.05
ACTN1-213ENST00000554508 GRIN2BQ13224 1484 aa15.35■□□□□ 0.05
ACTN1-213ENST00000554508 ABCA10Q8WWZ4 1543 aa15.35■□□□□ 0.05
ACTN1-213ENST00000554508 FBLN2P98095 1184 aa15.35■□□□□ 0.05
ACTN1-213ENST00000554508 TRIM41Q8WV44 630 aa15.34■□□□□ 0.05
ACTN1-213ENST00000554508 MAGI1Q96QZ7 1491 aaPredicted RBP15.33■□□□□ 0.05
ACTN1-213ENST00000554508 GAPVD1Q14C86 1478 aa15.33■□□□□ 0.04
ACTN1-213ENST00000554508 SNAPC4Q5SXM2 1469 aa15.33■□□□□ 0.04
ACTN1-213ENST00000554508 PBRM1Q86U86 1689 aa15.32■□□□□ 0.04
ACTN1-213ENST00000554508 SYNJ1O43426 1573 aa15.31■□□□□ 0.04
ACTN1-213ENST00000554508 RIMBP3CA6NJZ7 1639 aa15.31■□□□□ 0.04
ACTN1-213ENST00000554508 RIMBP3BA6NNM3 1639 aa15.31■□□□□ 0.04
ACTN1-213ENST00000554508 RIMBP3Q9UFD9 1639 aa15.31■□□□□ 0.04
ACTN1-213ENST00000554508 CHMP7Q8WUX9 453 aaPredicted RBP15.3■□□□□ 0.04
ACTN1-213ENST00000554508 ABCA5Q8WWZ7 1642 aa15.29■□□□□ 0.04
ACTN1-213ENST00000554508 SYNJ2O15056 1496 aa15.27■□□□□ 0.04
ACTN1-213ENST00000554508 ARHGEF11O15085 1522 aa15.27■□□□□ 0.03
ACTN1-213ENST00000554508 CLASP1Q7Z460 1538 aa15.2■□□□□ 0.02
ACTN1-213ENST00000554508 ERICH3Q5RHP9 1530 aa15.17■□□□□ 0.02
ACTN1-213ENST00000554508 CYB5RLQ6IPT4 315 aa15.16■□□□□ 0.02
ACTN1-213ENST00000554508 ADAMTS12P58397 1594 aa15.15■□□□□ 0.02
ACTN1-213ENST00000554508 GRIN2AQ12879 1464 aa15.14■□□□□ 0.01
ACTN1-213ENST00000554508 FHAD1B1AJZ9 1412 aa15.14■□□□□ 0.01
ACTN1-213ENST00000554508 ARAP1Q96P48 1450 aa15.12■□□□□ 0.01
ACTN1-213ENST00000554508 NUP160Q12769 1436 aa15.09■□□□□ 0.01
ACTN1-213ENST00000554508 CEP170Q5SW79 1584 aa15.07■□□□□ 0
ACTN1-213ENST00000554508 KIF27Q86VH2 1401 aa15.06■□□□□ 0
ACTN1-213ENST00000554508 IGF1RP08069 1367 aa15.02■□□□□ -0
ACTN1-213ENST00000554508 SHROOM2Q13796 1616 aa15.01□□□□□ -0.01
ACTN1-213ENST00000554508 CUL7Q14999 1698 aa15□□□□□ -0.01
ACTN1-213ENST00000554508 JPH4Q96JJ6 628 aa14.96□□□□□ -0.01
ACTN1-213ENST00000554508 ERCC6L2Q5T890 1561 aa14.95□□□□□ -0.02
ACTN1-213ENST00000554508 RUSC2Q8N2Y8 1516 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms