RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 PTPRGP23470 1445 aa4.44□□□□□ -1.7
PRPF39-206ENST00000554429 ASXL2Q76L83 1435 aa4.44□□□□□ -1.7
PRPF39-206ENST00000554429 C3orf67Q6ZVT6 689 aa4.44□□□□□ -1.7
PRPF39-206ENST00000554429 HCSTQ9UBK5 93 aa4.43□□□□□ -1.7
PRPF39-206ENST00000554429 CARMIL1Q5VZK9 1371 aa4.43□□□□□ -1.7
PRPF39-206ENST00000554429 BCANQ96GW7 911 aa4.43□□□□□ -1.7
PRPF39-206ENST00000554429 KDM4FA0A1W2PPD8 638 aa4.42□□□□□ -1.7
PRPF39-206ENST00000554429 FAM69CQ0P6D2 419 aa4.42□□□□□ -1.7
PRPF39-206ENST00000554429 IRX2Q9BZI1 471 aaPredicted RBP4.42□□□□□ -1.7
PRPF39-206ENST00000554429 ERBB3P21860 1342 aa4.42□□□□□ -1.7
PRPF39-206ENST00000554429 RAPGEF2Q9Y4G8 1499 aa4.42□□□□□ -1.7
PRPF39-206ENST00000554429 ARAP3Q8WWN8 1544 aa4.42□□□□□ -1.7
PRPF39-206ENST00000554429 ZNF687Q8N1G0 1237 aa4.41□□□□□ -1.7
PRPF39-206ENST00000554429 ADGRL1O94910 1474 aa4.41□□□□□ -1.7
PRPF39-206ENST00000554429 GOLGA3Q08378 1498 aa4.41□□□□□ -1.7
PRPF39-206ENST00000554429 WDR7Q9Y4E6 1490 aa4.41□□□□□ -1.7
PRPF39-206ENST00000554429 PHLDB1Q86UU1 1377 aa4.41□□□□□ -1.7
PRPF39-206ENST00000554429 ABCA9Q8IUA7 1624 aa4.41□□□□□ -1.7
PRPF39-206ENST00000554429 ADAMTSL3P82987 1691 aa4.4□□□□□ -1.7
PRPF39-206ENST00000554429 SAMD9Q5K651 1589 aa4.4□□□□□ -1.7
PRPF39-206ENST00000554429 COL17A1Q9UMD9 1497 aaPredicted RBP4.4□□□□□ -1.71
PRPF39-206ENST00000554429 TMEM106CQ9BVX2 250 aa4.4□□□□□ -1.71
PRPF39-206ENST00000554429 GTF3C3Q9Y5Q9 886 aa4.4□□□□□ -1.71
PRPF39-206ENST00000554429 DOK7Q18PE1 504 aa4.39□□□□□ -1.71
PRPF39-206ENST00000554429 PRXQ9BXM0 1461 aa4.39□□□□□ -1.71
PRPF39-206ENST00000554429 HECW2Q9P2P5 1572 aa4.39□□□□□ -1.71
PRPF39-206ENST00000554429 ZSWIM6Q9HCJ5 1215 aa4.38□□□□□ -1.71
PRPF39-206ENST00000554429 PCDHB13Q9Y5F0 798 aa4.38□□□□□ -1.71
PRPF39-206ENST00000554429 CFAP74Q9C0B2 1584 aa4.38□□□□□ -1.71
PRPF39-206ENST00000554429 RIMBP2O15034 1052 aa4.38□□□□□ -1.71
PRPF39-206ENST00000554429 BCORL1Q5H9F3 1711 aa4.37□□□□□ -1.71
PRPF39-206ENST00000554429 FRMPD1Q5SYB0 1578 aa4.37□□□□□ -1.71
PRPF39-206ENST00000554429 NEO1Q92859 1461 aa4.37□□□□□ -1.71
PRPF39-206ENST00000554429 HAP1P54257 671 aaPredicted RBP4.37□□□□□ -1.71
PRPF39-206ENST00000554429 ZMYM4Q5VZL5 1548 aa4.36□□□□□ -1.71
PRPF39-206ENST00000554429 NPM2Q86SE8 214 aaKnown RBP4.36□□□□□ -1.71
PRPF39-206ENST00000554429 ZNF710Q8N1W2 664 aa4.36□□□□□ -1.71
PRPF39-206ENST00000554429 RICTORQ6R327 1708 aa4.36□□□□□ -1.71
PRPF39-206ENST00000554429 KIF21BO75037 1637 aa4.35□□□□□ -1.71
PRPF39-206ENST00000554429 RAPGEF6Q8TEU7 1601 aa4.35□□□□□ -1.71
PRPF39-206ENST00000554429 PLCB2Q00722 1185 aa4.35□□□□□ -1.71
PRPF39-206ENST00000554429 ARHGEF40Q8TER5 1519 aa4.35□□□□□ -1.71
PRPF39-206ENST00000554429 CD109Q6YHK3 1445 aa4.34□□□□□ -1.71
PRPF39-206ENST00000554429 SUPT5HO00267 1087 aaKnown RBP4.34□□□□□ -1.71
PRPF39-206ENST00000554429 C14orf37Q86TY3 774 aa4.34□□□□□ -1.72
PRPF39-206ENST00000554429 ATP10BO94823 1461 aa4.33□□□□□ -1.72
PRPF39-206ENST00000554429 EFCAB5A4FU69 1503 aa4.33□□□□□ -1.72
PRPF39-206ENST00000554429 REREQ9P2R6 1566 aa4.33□□□□□ -1.72
PRPF39-206ENST00000554429 HOXB3P14651 431 aaPredicted RBP4.33□□□□□ -1.72
PRPF39-206ENST00000554429 MAGI2Q86UL8 1455 aa4.33□□□□□ -1.72
PRPF39-206ENST00000554429 EEA1Q15075 1411 aa4.33□□□□□ -1.72
PRPF39-206ENST00000554429 FHOD3Q2V2M9 1422 aa4.33□□□□□ -1.72
PRPF39-206ENST00000554429 TTC37Q6PGP7 1564 aa4.32□□□□□ -1.72
PRPF39-206ENST00000554429 PCF11O94913 1555 aaKnown RBP4.32□□□□□ -1.72
PRPF39-206ENST00000554429 PTPRMP28827 1452 aa4.31□□□□□ -1.72
PRPF39-206ENST00000554429 MADDQ8WXG6 1647 aa4.31□□□□□ -1.72
PRPF39-206ENST00000554429 VARS2Q5ST30 1063 aaKnown RBP4.31□□□□□ -1.72
PRPF39-206ENST00000554429 NUP153P49790 1475 aaKnown RBP4.3□□□□□ -1.72
PRPF39-206ENST00000554429 PBX2P40425 430 aa4.3□□□□□ -1.72
PRPF39-206ENST00000554429 ZBTB22O15209 634 aa4.3□□□□□ -1.72
PRPF39-206ENST00000554429 SIGLEC1Q9BZZ2 1709 aa4.3□□□□□ -1.72
PRPF39-206ENST00000554429 ARHGEF12Q9NZN5 1544 aa4.3□□□□□ -1.72
PRPF39-206ENST00000554429 IFNL1Q8IU54 200 aa4.29□□□□□ -1.72
PRPF39-206ENST00000554429 PREX1Q8TCU6 1659 aa4.29□□□□□ -1.72
PRPF39-206ENST00000554429 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.29□□□□□ -1.72
PRPF39-206ENST00000554429 FER1L4A9Z1Z3 1794 aa4.29□□□□□ -1.72
PRPF39-206ENST00000554429 LAPTM4AQ15012 233 aa4.29□□□□□ -1.72
PRPF39-206ENST00000554429 BCL11AQ9H165 835 aa4.29□□□□□ -1.72
PRPF39-206ENST00000554429 RIMS1Q86UR5 1692 aaKnown RBP4.29□□□□□ -1.72
PRPF39-206ENST00000554429 KDM5CP41229 1560 aa4.29□□□□□ -1.72
PRPF39-206ENST00000554429 MYO5CQ9NQX4 1742 aa4.29□□□□□ -1.72
PRPF39-206ENST00000554429 TRIM26Q12899 539 aaPredicted RBP4.29□□□□□ -1.72
PRPF39-206ENST00000554429 TMEM132AQ24JP5 1023 aa4.29□□□□□ -1.72
PRPF39-206ENST00000554429 FANCAO15360 1455 aa4.28□□□□□ -1.72
PRPF39-206ENST00000554429 ZFYVE16Q7Z3T8 1539 aa4.28□□□□□ -1.72
PRPF39-206ENST00000554429 SPDYE4A6NLX3 237 aa4.28□□□□□ -1.72
PRPF39-206ENST00000554429 PDCD7Q8N8D1 485 aaKnown RBP4.28□□□□□ -1.72
PRPF39-206ENST00000554429 DENND4BO75064 1496 aaPredicted RBP4.28□□□□□ -1.73
PRPF39-206ENST00000554429 IQSEC2Q5JU85 1478 aa4.28□□□□□ -1.73
PRPF39-206ENST00000554429 MROH2AA6NES4 1674 aa4.27□□□□□ -1.73
PRPF39-206ENST00000554429 LOC105371045A0A1W2PR82 267 aa4.27□□□□□ -1.73
PRPF39-206ENST00000554429 RASEFQ8IZ41 740 aa4.27□□□□□ -1.73
PRPF39-206ENST00000554429 FBXO41Q8TF61 875 aa4.27□□□□□ -1.73
PRPF39-206ENST00000554429 AGLP35573 1532 aa4.27□□□□□ -1.73
PRPF39-206ENST00000554429 HECW1Q76N89 1606 aa4.27□□□□□ -1.73
PRPF39-206ENST00000554429 LSM11P83369 360 aaKnown RBP eCLIP4.26□□□□□ -1.736e-6■□□□□ 8.3
PRPF39-206ENST00000554429 ZBTB47Q9UFB7 747 aaPredicted RBP4.26□□□□□ -1.73
PRPF39-206ENST00000554429 AKNAQ7Z591 1439 aa4.26□□□□□ -1.73
PRPF39-206ENST00000554429 POGZQ7Z3K3 1410 aa4.26□□□□□ -1.73
PRPF39-206ENST00000554429 G3V3G9 751 aa4.26□□□□□ -1.73
PRPF39-206ENST00000554429 DCAF8Q5TAQ9 597 aa4.26□□□□□ -1.73
PRPF39-206ENST00000554429 STRCQ7RTU9 1775 aa4.26□□□□□ -1.73
PRPF39-206ENST00000554429 LRRIQ1Q96JM4 1722 aa4.26□□□□□ -1.73
PRPF39-206ENST00000554429 ITSN2Q9NZM3 1697 aa4.26□□□□□ -1.73
PRPF39-206ENST00000554429 PLCH2O75038 1416 aa4.26□□□□□ -1.73
PRPF39-206ENST00000554429 SETD1BQ9UPS6 1966 aaKnown RBP4.25□□□□□ -1.73
PRPF39-206ENST00000554429 ANKRD13DQ6ZTN6 518 aa4.25□□□□□ -1.73
PRPF39-206ENST00000554429 PREX2Q70Z35 1606 aa4.25□□□□□ -1.73
PRPF39-206ENST00000554429 C9orf84Q5VXU9 1444 aa4.25□□□□□ -1.73
PRPF39-206ENST00000554429 FAM9AQ8IZU1 332 aaPredicted RBP4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms