RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 UHRF1BP1Q6BDS2 1440 aa15.94■□□□□ 0.14
CCDC88C-206ENST00000553437 SHANK2Q9UPX8 1470 aa15.93■□□□□ 0.14
CCDC88C-206ENST00000553437 PTPRKQ15262 1439 aa15.93■□□□□ 0.14
CCDC88C-206ENST00000553437 RRP7BPQ9NSQ0 103 aa15.91■□□□□ 0.14
CCDC88C-206ENST00000553437 MROH2AA6NES4 1674 aa15.91■□□□□ 0.14
CCDC88C-206ENST00000553437 KIF15Q9NS87 1388 aa15.9■□□□□ 0.14
CCDC88C-206ENST00000553437 WASHC2CQ9Y4E1 1318 aa15.9■□□□□ 0.14
CCDC88C-206ENST00000553437 DISP3Q9P2K9 1392 aa15.89■□□□□ 0.13
CCDC88C-206ENST00000553437 FAM50AQ14320 339 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-206ENST00000553437 PPARGC1BQ86YN6 1023 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-206ENST00000553437 CHIC2Q9UKJ5 165 aa15.89■□□□□ 0.13
CCDC88C-206ENST00000553437 DNMT1P26358 1616 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-206ENST00000553437 CLTCQ00610 1675 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-206ENST00000553437 PREX1Q8TCU6 1659 aa15.89■□□□□ 0.13
CCDC88C-206ENST00000553437 DUOX2Q9NRD8 1548 aa15.89■□□□□ 0.13
CCDC88C-206ENST00000553437 FAM135AQ9P2D6 1515 aa15.88■□□□□ 0.13
CCDC88C-206ENST00000553437 FBXO31Q5XUX0 539 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-206ENST00000553437 KDM5DQ9BY66 1539 aa15.87■□□□□ 0.13
CCDC88C-206ENST00000553437 NCOA1Q15788 1441 aa15.86■□□□□ 0.13
CCDC88C-206ENST00000553437 SETD1BQ9UPS6 1966 aaKnown RBP15.86■□□□□ 0.13
CCDC88C-206ENST00000553437 ANKRD30AQ9BXX3 1397 aa15.86■□□□□ 0.13
CCDC88C-206ENST00000553437 ERBINQ96RT1 1412 aa15.85■□□□□ 0.13
CCDC88C-206ENST00000553437 PZPP20742 1482 aa15.84■□□□□ 0.13
CCDC88C-206ENST00000553437 RNF17Q9BXT8 1623 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-206ENST00000553437 CROCC2H7BZ55 1655 aa15.84■□□□□ 0.13
CCDC88C-206ENST00000553437 ADGRL2O95490 1459 aa15.84■□□□□ 0.13
CCDC88C-206ENST00000553437 EIF2AK4Q9P2K8 1649 aaKnown RBP15.83■□□□□ 0.13
CCDC88C-206ENST00000553437 MROH1Q8NDA8 1641 aa15.83■□□□□ 0.12
CCDC88C-206ENST00000553437 ABCC3O15438 1527 aa15.82■□□□□ 0.12
CCDC88C-206ENST00000553437 TNRQ92752 1358 aa15.81■□□□□ 0.12
CCDC88C-206ENST00000553437 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.79■□□□□ 0.12
CCDC88C-206ENST00000553437 CERKQ8TCT0 537 aa15.79■□□□□ 0.12
CCDC88C-206ENST00000553437 DMRT2Q9Y5R5 561 aa15.79■□□□□ 0.12
CCDC88C-206ENST00000553437 SPATA31D1Q6ZQQ2 1576 aa15.79■□□□□ 0.12
CCDC88C-206ENST00000553437 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.78■□□□□ 0.12
CCDC88C-206ENST00000553437 MYO3AQ8NEV4 1616 aa15.77■□□□□ 0.12
CCDC88C-206ENST00000553437 PRDM15P57071 1507 aaPredicted RBP15.77■□□□□ 0.11
CCDC88C-206ENST00000553437 STRCQ7RTU9 1775 aa15.77■□□□□ 0.11
CCDC88C-206ENST00000553437 A2ML1A8K2U0 1454 aa15.77■□□□□ 0.11
CCDC88C-206ENST00000553437 CEP170BQ9Y4F5 1589 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-206ENST00000553437 PTPRTO14522 1441 aa15.76■□□□□ 0.11
CCDC88C-206ENST00000553437 ANKRD50Q9ULJ7 1429 aa15.76■□□□□ 0.11
CCDC88C-206ENST00000553437 CAMSAP1Q5T5Y3 1602 aa15.76■□□□□ 0.11
CCDC88C-206ENST00000553437 ROCK1Q13464 1354 aa15.75■□□□□ 0.11
CCDC88C-206ENST00000553437 NCKAP5LQ9HCH0 1330 aa15.75■□□□□ 0.11
CCDC88C-206ENST00000553437 ARHGAP31Q2M1Z3 1444 aa15.75■□□□□ 0.11
CCDC88C-206ENST00000553437 PLA2R1Q13018 1463 aa15.74■□□□□ 0.11
CCDC88C-206ENST00000553437 KANK1Q14678 1352 aa15.74■□□□□ 0.11
CCDC88C-206ENST00000553437 ZNF142P52746 1687 aaPredicted RBP15.73■□□□□ 0.11
CCDC88C-206ENST00000553437 ZC3H13Q5T200 1668 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-206ENST00000553437 ERVK-7P63135 1459 aa15.73■□□□□ 0.11
CCDC88C-206ENST00000553437 NLRP1Q9C000 1473 aa15.73■□□□□ 0.11
CCDC88C-206ENST00000553437 DEPDC5O75140 1603 aa15.73■□□□□ 0.11
CCDC88C-206ENST00000553437 PKD2Q13563 968 aa15.73■□□□□ 0.11
CCDC88C-206ENST00000553437 RRBP1Q9P2E9 1410 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-206ENST00000553437 VWDEQ8N2E2 1590 aa15.72■□□□□ 0.11
CCDC88C-206ENST00000553437 ADRA2BP18089 450 aa15.72■□□□□ 0.11
CCDC88C-206ENST00000553437 ITGAEP38570 1179 aa15.72■□□□□ 0.11
CCDC88C-206ENST00000553437 LMTK2Q8IWU2 1503 aa15.72■□□□□ 0.11
CCDC88C-206ENST00000553437 CACNB1Q02641 598 aaPredicted RBP15.69■□□□□ 0.1
CCDC88C-206ENST00000553437 THEMISQ8N1K5 641 aaPredicted RBP15.69■□□□□ 0.1
CCDC88C-206ENST00000553437 CEP152O94986 1710 aa15.68■□□□□ 0.1
CCDC88C-206ENST00000553437 UGGT1Q9NYU2 1555 aa15.66■□□□□ 0.1
CCDC88C-206ENST00000553437 ANKLE2Q86XL3 938 aa15.65■□□□□ 0.1
CCDC88C-206ENST00000553437 NOS1P29475 1434 aa15.64■□□□□ 0.09
CCDC88C-206ENST00000553437 IDI1Q13907 227 aa15.63■□□□□ 0.09
CCDC88C-206ENST00000553437 EFCAB6Q5THR3 1501 aa15.63■□□□□ 0.09
CCDC88C-206ENST00000553437 LTBP4Q8N2S1 1624 aa15.61■□□□□ 0.09
CCDC88C-206ENST00000553437 ZNF335Q9H4Z2 1342 aaPredicted RBP15.61■□□□□ 0.09
CCDC88C-206ENST00000553437 UNC13BO14795 1591 aa15.61■□□□□ 0.09
CCDC88C-206ENST00000553437 NEURL4Q96JN8 1562 aa15.6■□□□□ 0.09
CCDC88C-206ENST00000553437 NUP155O75694 1391 aa15.6■□□□□ 0.09
CCDC88C-206ENST00000553437 MED14O60244 1454 aa15.59■□□□□ 0.09
CCDC88C-206ENST00000553437 RPRD2Q5VT52 1461 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-206ENST00000553437 LTKP29376 864 aa15.59■□□□□ 0.09
CCDC88C-206ENST00000553437 SLC52A1Q9NWF4 448 aa15.59■□□□□ 0.09
CCDC88C-206ENST00000553437 NAIPQ13075 1403 aa15.59■□□□□ 0.09
CCDC88C-206ENST00000553437 SYNMO15061 1565 aa15.58■□□□□ 0.09
CCDC88C-206ENST00000553437 NPHP4O75161 1426 aaPredicted RBP15.58■□□□□ 0.08
CCDC88C-206ENST00000553437 ARHGAP23Q9P227 1491 aa15.58■□□□□ 0.08
CCDC88C-206ENST00000553437 TXNDC2Q86VQ3 553 aa15.56■□□□□ 0.08
CCDC88C-206ENST00000553437 TMEM2Q9UHN6 1383 aa15.56■□□□□ 0.08
CCDC88C-206ENST00000553437 SLIT1O75093 1534 aa15.56■□□□□ 0.08
CCDC88C-206ENST00000553437 UBR1Q8IWV7 1749 aa15.55■□□□□ 0.08
CCDC88C-206ENST00000553437 TET3O43151 1660 aa15.55■□□□□ 0.08
CCDC88C-206ENST00000553437 STAG3Q9UJ98 1225 aa15.55■□□□□ 0.08
CCDC88C-206ENST00000553437 HFM1A2PYH4 1435 aa15.54■□□□□ 0.08
CCDC88C-206ENST00000553437 CFAP65Q6ZU64 1925 aaKnown RBP15.54■□□□□ 0.08
CCDC88C-206ENST00000553437 PIK3C2BO00750 1634 aa15.54■□□□□ 0.08
CCDC88C-206ENST00000553437 IQGAP3Q86VI3 1631 aa15.54■□□□□ 0.08
CCDC88C-206ENST00000553437 SCAF11Q99590 1463 aaKnown RBP15.53■□□□□ 0.08
CCDC88C-206ENST00000553437 EID1Q9Y6B2 187 aa15.52■□□□□ 0.08
CCDC88C-206ENST00000553437 POLR1AO95602 1720 aaPredicted RBP15.51■□□□□ 0.07
CCDC88C-206ENST00000553437 IQSEC2Q5JU85 1478 aa15.51■□□□□ 0.07
CCDC88C-206ENST00000553437 ADGRB3O60242 1522 aa15.49■□□□□ 0.07
CCDC88C-206ENST00000553437 E9PCH4 1651 aa15.49■□□□□ 0.07
CCDC88C-206ENST00000553437 GCC2Q8IWJ2 1684 aa15.49■□□□□ 0.07
CCDC88C-206ENST00000553437 KDM5AP29375 1690 aaKnown RBP15.48■□□□□ 0.07
CCDC88C-206ENST00000553437 IQGAP1P46940 1657 aa15.47■□□□□ 0.07
CCDC88C-206ENST00000553437 ZFYVE9O95405 1425 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms