RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 NISCHQ9Y2I1 1504 aa25.25■■□□□ 1.63
CCDC88C-206ENST00000553437 CCDC180Q9P1Z9 1646 aa22.4■■□□□ 1.18
CCDC88C-206ENST00000553437 AEBP2Q6ZN18 517 aaPredicted RBP22.22■■□□□ 1.15
CCDC88C-206ENST00000553437 ABCC9O60706 1549 aa22.17■■□□□ 1.14
CCDC88C-206ENST00000553437 RB1CC1Q8TDY2 1594 aa21.2■□□□□ 0.98
CCDC88C-206ENST00000553437 DCAF8L2P0C7V8 631 aa21.17■□□□□ 0.98
CCDC88C-206ENST00000553437 NACADO15069 1562 aa21.17■□□□□ 0.98
CCDC88C-206ENST00000553437 MYO15BQ96JP2 1530 aa21.03■□□□□ 0.96
CCDC88C-206ENST00000553437 ZCCHC6Q5VYS8 1495 aaKnown RBP21■□□□□ 0.95
CCDC88C-206ENST00000553437 DNAJC5BQ9UF47 199 aa20.99■□□□□ 0.95
CCDC88C-206ENST00000553437 DCAF1Q9Y4B6 1507 aa20.88■□□□□ 0.93
CCDC88C-206ENST00000553437 CHIC1Q5VXU3 224 aa20.77■□□□□ 0.92
CCDC88C-206ENST00000553437 PABPN1Q86U42 306 aaKnown RBP eCLIP20.75■□□□□ 0.91
CCDC88C-206ENST00000553437 UNC13AQ9UPW8 1703 aa20.63■□□□□ 0.89
CCDC88C-206ENST00000553437 BICRAQ9NZM4 1560 aa20.62■□□□□ 0.89
CCDC88C-206ENST00000553437 SCRIBQ14160 1630 aa20.47■□□□□ 0.87
CCDC88C-206ENST00000553437 SHROOM4Q9ULL8 1493 aa20.37■□□□□ 0.85
CCDC88C-206ENST00000553437 EIF4G1Q04637 1599 aaKnown RBP20.07■□□□□ 0.8
CCDC88C-206ENST00000553437 CC2D2AQ9P2K1 1620 aa20.01■□□□□ 0.79
CCDC88C-206ENST00000553437 CECR2Q9BXF3 1484 aa19.94■□□□□ 0.78
CCDC88C-206ENST00000553437 DNAJC5Q9H3Z4 198 aa19.78■□□□□ 0.76
CCDC88C-206ENST00000553437 NCAPD3P42695 1498 aa19.6■□□□□ 0.73
CCDC88C-206ENST00000553437 ATAD2BQ9ULI0 1458 aa19.58■□□□□ 0.72
CCDC88C-206ENST00000553437 SMARCA4P51532 1647 aa19.58■□□□□ 0.72
CCDC88C-206ENST00000553437 BAZ1AQ9NRL2 1556 aaPredicted RBP19.54■□□□□ 0.72
CCDC88C-206ENST00000553437 SMARCA2P51531 1590 aa19.49■□□□□ 0.71
CCDC88C-206ENST00000553437 MROH2BQ7Z745 1585 aa19.46■□□□□ 0.71
CCDC88C-206ENST00000553437 HMGXB3Q12766 1538 aa19.42■□□□□ 0.7
CCDC88C-206ENST00000553437 PEG3Q9GZU2 1588 aa19.41■□□□□ 0.7
CCDC88C-206ENST00000553437 BAZ1BQ9UIG0 1483 aaKnown RBP19.36■□□□□ 0.69
CCDC88C-206ENST00000553437 RSF1Q96T23 1441 aaPredicted RBP19.22■□□□□ 0.67
CCDC88C-206ENST00000553437 WIZO95785 1651 aa19.18■□□□□ 0.66
CCDC88C-206ENST00000553437 SENP3Q9H4L4 574 aaPredicted RBP19.18■□□□□ 0.66
CCDC88C-206ENST00000553437 NESP48681 1621 aa19.15■□□□□ 0.66
CCDC88C-206ENST00000553437 POTEDQ86YR6 584 aa19.13■□□□□ 0.65
CCDC88C-206ENST00000553437 ERCC6Q03468 1493 aa19.09■□□□□ 0.65
CCDC88C-206ENST00000553437 LAMC3Q9Y6N6 1575 aa19.02■□□□□ 0.64
CCDC88C-206ENST00000553437 CADPSQ9ULU8 1353 aa19.02■□□□□ 0.64
CCDC88C-206ENST00000553437 TOP2AP11388 1531 aaKnown RBP19■□□□□ 0.63
CCDC88C-206ENST00000553437 CUX2O14529 1486 aa18.97■□□□□ 0.63
CCDC88C-206ENST00000553437 PDS5BQ9NTI5 1447 aa18.95■□□□□ 0.62
CCDC88C-206ENST00000553437 CFTRP13569 1480 aa18.86■□□□□ 0.61
CCDC88C-206ENST00000553437 THOC2Q8NI27 1593 aaKnown RBP18.84■□□□□ 0.61
CCDC88C-206ENST00000553437 CCDC88BA6NC98 1476 aa18.83■□□□□ 0.6
CCDC88C-206ENST00000553437 KIF21AQ7Z4S6 1674 aa18.8■□□□□ 0.6
CCDC88C-206ENST00000553437 FANCD2Q9BXW9 1451 aa18.77■□□□□ 0.59
CCDC88C-206ENST00000553437 MRC2Q9UBG0 1479 aa18.75■□□□□ 0.59
CCDC88C-206ENST00000553437 CEP164Q9UPV0 1460 aa18.73■□□□□ 0.59
CCDC88C-206ENST00000553437 PHF23Q9BUL5 403 aaPredicted RBP18.71■□□□□ 0.59
CCDC88C-206ENST00000553437 WDR62O43379 1518 aa18.69■□□□□ 0.58
CCDC88C-206ENST00000553437 URB2Q14146 1524 aaKnown RBP18.6■□□□□ 0.57
CCDC88C-206ENST00000553437 SUPT5HO00267 1087 aaKnown RBP18.6■□□□□ 0.57
CCDC88C-206ENST00000553437 TRIM41Q8WV44 630 aa18.56■□□□□ 0.56
CCDC88C-206ENST00000553437 PRDM2Q13029 1718 aa18.5■□□□□ 0.55
CCDC88C-206ENST00000553437 TOPBP1Q92547 1522 aa18.44■□□□□ 0.54
CCDC88C-206ENST00000553437 ABCC8Q09428 1581 aa18.42■□□□□ 0.54
CCDC88C-206ENST00000553437 IFT140Q96RY7 1462 aa18.38■□□□□ 0.53
CCDC88C-206ENST00000553437 DNMBPQ6XZF7 1577 aa18.38■□□□□ 0.53
CCDC88C-206ENST00000553437 ZNF608Q9ULD9 1512 aaPredicted RBP18.33■□□□□ 0.52
CCDC88C-206ENST00000553437 POLA1P09884 1462 aaPredicted RBP18.29■□□□□ 0.52
CCDC88C-206ENST00000553437 CUX1P39880 1505 aa18.26■□□□□ 0.51
CCDC88C-206ENST00000553437 TARBP1Q13395 1621 aaKnown RBP18.23■□□□□ 0.51
CCDC88C-206ENST00000553437 RAD54L2Q9Y4B4 1467 aa18.23■□□□□ 0.51
CCDC88C-206ENST00000553437 SOGA1O94964 1423 aa18.23■□□□□ 0.51
CCDC88C-206ENST00000553437 AQRO60306 1485 aaKnown RBP eCLIP18.21■□□□□ 0.512e-7■■■■□ 26.4
CCDC88C-206ENST00000553437 FGD5Q6ZNL6 1462 aa18.21■□□□□ 0.51
CCDC88C-206ENST00000553437 OSCARQ8IYS5 282 aa18.2■□□□□ 0.5
CCDC88C-206ENST00000553437 EIF4G3O43432 1585 aaKnown RBP18.16■□□□□ 0.5
CCDC88C-206ENST00000553437 TDRD9Q8NDG6 1382 aaKnown RBP18.16■□□□□ 0.5
CCDC88C-206ENST00000553437 WRNQ14191 1432 aaPredicted RBP eCLIP18.09■□□□□ 0.49
CCDC88C-206ENST00000553437 WDR97A6NE52 1622 aa18.05■□□□□ 0.48
CCDC88C-206ENST00000553437 ABCA10Q8WWZ4 1543 aa18.04■□□□□ 0.48
CCDC88C-206ENST00000553437 TOP2BQ02880 1626 aa18.02■□□□□ 0.48
CCDC88C-206ENST00000553437 SYNJ1O43426 1573 aa18.02■□□□□ 0.48
CCDC88C-206ENST00000553437 FOXD1Q16676 465 aa18.01■□□□□ 0.47
CCDC88C-206ENST00000553437 GRIN2BQ13224 1484 aa18.01■□□□□ 0.47
CCDC88C-206ENST00000553437 SNAPC4Q5SXM2 1469 aa18.01■□□□□ 0.47
CCDC88C-206ENST00000553437 FBLN2P98095 1184 aa18■□□□□ 0.47
CCDC88C-206ENST00000553437 GAPVD1Q14C86 1478 aa18■□□□□ 0.47
CCDC88C-206ENST00000553437 BIVM-ERCC5R4GMW8 1640 aa17.99■□□□□ 0.47
CCDC88C-206ENST00000553437 MAGI1Q96QZ7 1491 aaPredicted RBP17.96■□□□□ 0.47
CCDC88C-206ENST00000553437 CHMP7Q8WUX9 453 aaPredicted RBP17.94■□□□□ 0.46
CCDC88C-206ENST00000553437 ABCA5Q8WWZ7 1642 aa17.93■□□□□ 0.46
CCDC88C-206ENST00000553437 SYNJ2O15056 1496 aa17.91■□□□□ 0.46
CCDC88C-206ENST00000553437 CHD1O14646 1710 aa17.9■□□□□ 0.46
CCDC88C-206ENST00000553437 ARHGEF11O15085 1522 aa17.85■□□□□ 0.45
CCDC88C-206ENST00000553437 PBRM1Q86U86 1689 aa17.84■□□□□ 0.45
CCDC88C-206ENST00000553437 RIMBP3CA6NJZ7 1639 aa17.83■□□□□ 0.45
CCDC88C-206ENST00000553437 RIMBP3BA6NNM3 1639 aa17.83■□□□□ 0.45
CCDC88C-206ENST00000553437 RIMBP3Q9UFD9 1639 aa17.83■□□□□ 0.45
CCDC88C-206ENST00000553437 CLASP1Q7Z460 1538 aa17.81■□□□□ 0.44
CCDC88C-206ENST00000553437 FHAD1B1AJZ9 1412 aa17.8■□□□□ 0.44
CCDC88C-206ENST00000553437 ERICH3Q5RHP9 1530 aa17.79■□□□□ 0.44
CCDC88C-206ENST00000553437 GRIN2AQ12879 1464 aa17.77■□□□□ 0.44
CCDC88C-206ENST00000553437 ADAMTS12P58397 1594 aa17.77■□□□□ 0.44
CCDC88C-206ENST00000553437 CYB5RLQ6IPT4 315 aa17.74■□□□□ 0.43
CCDC88C-206ENST00000553437 NUP160Q12769 1436 aa17.73■□□□□ 0.43
CCDC88C-206ENST00000553437 IGF1RP08069 1367 aa17.73■□□□□ 0.43
CCDC88C-206ENST00000553437 KIF27Q86VH2 1401 aa17.72■□□□□ 0.43
CCDC88C-206ENST00000553437 ARAP1Q96P48 1450 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms