RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 CEP170BQ9Y4F5 1589 aaPredicted RBP18.09■□□□□ 0.49
NEK3-204ENST00000552973 TNRQ92752 1358 aa18.09■□□□□ 0.49
NEK3-204ENST00000552973 PLA2R1Q13018 1463 aa18.07■□□□□ 0.48
NEK3-204ENST00000552973 A2ML1A8K2U0 1454 aa18.06■□□□□ 0.48
NEK3-204ENST00000552973 TCOF1Q13428 1488 aaKnown RBP18.06■□□□□ 0.48
NEK3-204ENST00000552973 ARHGEF5Q12774 1597 aa18.05■□□□□ 0.48
NEK3-204ENST00000552973 APLP2Q06481 763 aa18.05■□□□□ 0.48
NEK3-204ENST00000552973 KDM5DQ9BY66 1539 aa18.04■□□□□ 0.48
NEK3-204ENST00000552973 PZPP20742 1482 aa18.04■□□□□ 0.48
NEK3-204ENST00000552973 MYOM3Q5VTT5 1437 aa18.04■□□□□ 0.48
NEK3-204ENST00000552973 ZNF142P52746 1687 aaPredicted RBP18.03■□□□□ 0.48
NEK3-204ENST00000552973 UBAP1LF5GYI3 381 aa18.02■□□□□ 0.48
NEK3-204ENST00000552973 MIA2Q96PC5 1412 aa18.02■□□□□ 0.48
NEK3-204ENST00000552973 MAP3K1Q13233 1512 aa18.02■□□□□ 0.47
NEK3-204ENST00000552973 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.02■□□□□ 0.47
NEK3-204ENST00000552973 DNMT1P26358 1616 aaKnown RBP18.01■□□□□ 0.47
NEK3-204ENST00000552973 ANKLE2Q86XL3 938 aa18■□□□□ 0.47
NEK3-204ENST00000552973 THEMISQ8N1K5 641 aaPredicted RBP18■□□□□ 0.47
NEK3-204ENST00000552973 DISP3Q9P2K9 1392 aa18■□□□□ 0.47
NEK3-204ENST00000552973 RRP7BPQ9NSQ0 103 aa17.99■□□□□ 0.47
NEK3-204ENST00000552973 IQSEC2Q5JU85 1478 aa17.98■□□□□ 0.47
NEK3-204ENST00000552973 MAST1Q9Y2H9 1570 aa17.96■□□□□ 0.47
NEK3-204ENST00000552973 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.96■□□□□ 0.477e-6■■■□□ 15
NEK3-204ENST00000552973 FAM135AQ9P2D6 1515 aa17.96■□□□□ 0.47
NEK3-204ENST00000552973 CHIC2Q9UKJ5 165 aa17.95■□□□□ 0.46
NEK3-204ENST00000552973 ABCC5O15440 1437 aa17.95■□□□□ 0.46
NEK3-204ENST00000552973 ABCC3O15438 1527 aa17.94■□□□□ 0.46
NEK3-204ENST00000552973 ILDR2Q71H61 639 aa17.94■□□□□ 0.46
NEK3-204ENST00000552973 NLRP1Q9C000 1473 aa17.94■□□□□ 0.46
NEK3-204ENST00000552973 KIF15Q9NS87 1388 aa17.93■□□□□ 0.46
NEK3-204ENST00000552973 UGGT1Q9NYU2 1555 aa17.93■□□□□ 0.46
NEK3-204ENST00000552973 SCAF1Q9H7N4 1312 aaKnown RBP17.92■□□□□ 0.46
NEK3-204ENST00000552973 DUOX2Q9NRD8 1548 aa17.91■□□□□ 0.46
NEK3-204ENST00000552973 NEURL4Q96JN8 1562 aa17.91■□□□□ 0.46
NEK3-204ENST00000552973 NPHP4O75161 1426 aaPredicted RBP17.9■□□□□ 0.46
NEK3-204ENST00000552973 PIP4K2BP78356 416 aa17.9■□□□□ 0.46
NEK3-204ENST00000552973 RNF17Q9BXT8 1623 aaKnown RBP17.9■□□□□ 0.46
NEK3-204ENST00000552973 DAPK1P53355 1430 aa17.89■□□□□ 0.46
NEK3-204ENST00000552973 ERVK-7P63135 1459 aa17.89■□□□□ 0.45
NEK3-204ENST00000552973 SHANK2Q9UPX8 1470 aa17.89■□□□□ 0.45
NEK3-204ENST00000552973 MROH1Q8NDA8 1641 aa17.88■□□□□ 0.45
NEK3-204ENST00000552973 PTPN23Q9H3S7 1636 aa17.88■□□□□ 0.45
NEK3-204ENST00000552973 FGD6Q6ZV73 1430 aa17.88■□□□□ 0.45
NEK3-204ENST00000552973 SPATA31D1Q6ZQQ2 1576 aa17.87■□□□□ 0.45
NEK3-204ENST00000552973 EIF2AK4Q9P2K8 1649 aaKnown RBP17.87■□□□□ 0.45
NEK3-204ENST00000552973 TOM1O60784 492 aa17.86■□□□□ 0.45
NEK3-204ENST00000552973 FAM50AQ14320 339 aaKnown RBP17.85■□□□□ 0.45
NEK3-204ENST00000552973 ERBINQ96RT1 1412 aa17.85■□□□□ 0.45
NEK3-204ENST00000552973 MED14O60244 1454 aa17.84■□□□□ 0.45
NEK3-204ENST00000552973 TXNDC2Q86VQ3 553 aa17.84■□□□□ 0.45
NEK3-204ENST00000552973 POLR1AO95602 1720 aaPredicted RBP17.84■□□□□ 0.45
NEK3-204ENST00000552973 ZC3H13Q5T200 1668 aaKnown RBP17.83■□□□□ 0.45
NEK3-204ENST00000552973 CPS1P31327 1500 aa17.83■□□□□ 0.45
NEK3-204ENST00000552973 ANKRD30AQ9BXX3 1397 aa17.83■□□□□ 0.45
NEK3-204ENST00000552973 LTKP29376 864 aa17.83■□□□□ 0.44
NEK3-204ENST00000552973 HSPA1LP34931 641 aa17.83■□□□□ 0.44
NEK3-204ENST00000552973 KANK1Q14678 1352 aa17.82■□□□□ 0.44
NEK3-204ENST00000552973 CEP152O94986 1710 aa17.82■□□□□ 0.44
NEK3-204ENST00000552973 STAG3Q9UJ98 1225 aa17.82■□□□□ 0.44
NEK3-204ENST00000552973 VWDEQ8N2E2 1590 aa17.82■□□□□ 0.44
NEK3-204ENST00000552973 ARHGAP31Q2M1Z3 1444 aa17.81■□□□□ 0.44
NEK3-204ENST00000552973 SENP3Q9H4L4 574 aaPredicted RBP17.8■□□□□ 0.44
NEK3-204ENST00000552973 DEPDC5O75140 1603 aa17.79■□□□□ 0.44
NEK3-204ENST00000552973 PRDM15P57071 1507 aaPredicted RBP17.78■□□□□ 0.44
NEK3-204ENST00000552973 IDI1Q13907 227 aa17.78■□□□□ 0.44
NEK3-204ENST00000552973 EID1Q9Y6B2 187 aa17.78■□□□□ 0.44
NEK3-204ENST00000552973 CROCC2H7BZ55 1655 aa17.77■□□□□ 0.44
NEK3-204ENST00000552973 SOCS7O14512 581 aa17.77■□□□□ 0.44
NEK3-204ENST00000552973 SCAF11Q99590 1463 aaKnown RBP17.76■□□□□ 0.43
NEK3-204ENST00000552973 IQGAP1P46940 1657 aa17.76■□□□□ 0.43
NEK3-204ENST00000552973 CFAP65Q6ZU64 1925 aaKnown RBP17.76■□□□□ 0.43
NEK3-204ENST00000552973 TMEM2Q9UHN6 1383 aa17.74■□□□□ 0.43
NEK3-204ENST00000552973 ARHGAP23Q9P227 1491 aa17.74■□□□□ 0.43
NEK3-204ENST00000552973 LRRC7Q96NW7 1537 aa17.73■□□□□ 0.43
NEK3-204ENST00000552973 UBR1Q8IWV7 1749 aa17.73■□□□□ 0.43
NEK3-204ENST00000552973 PPARGC1BQ86YN6 1023 aaKnown RBP17.72■□□□□ 0.43
NEK3-204ENST00000552973 SLIT1O75093 1534 aa17.72■□□□□ 0.43
NEK3-204ENST00000552973 ANKRD50Q9ULJ7 1429 aa17.71■□□□□ 0.43
NEK3-204ENST00000552973 SLC26A8Q96RN1 970 aa17.7■□□□□ 0.42
NEK3-204ENST00000552973 LMTK2Q8IWU2 1503 aa17.7■□□□□ 0.42
NEK3-204ENST00000552973 ADGRL2O95490 1459 aa17.69■□□□□ 0.42
NEK3-204ENST00000552973 PIK3C2BO00750 1634 aa17.69■□□□□ 0.42
NEK3-204ENST00000552973 BCANQ96GW7 911 aa17.69■□□□□ 0.42
NEK3-204ENST00000552973 ALKQ9UM73 1620 aa17.69■□□□□ 0.42
NEK3-204ENST00000552973 NOS1P29475 1434 aa17.68■□□□□ 0.42
NEK3-204ENST00000552973 ITGAEP38570 1179 aa17.68■□□□□ 0.42
NEK3-204ENST00000552973 RBM33Q96EV2 1170 aaKnown RBP17.68■□□□□ 0.42
NEK3-204ENST00000552973 STRCP1A6NGW2 1772 aa17.68■□□□□ 0.42
NEK3-204ENST00000552973 SLC52A1Q9NWF4 448 aa17.67■□□□□ 0.42
NEK3-204ENST00000552973 EFCAB6Q5THR3 1501 aa17.67■□□□□ 0.42
NEK3-204ENST00000552973 SYNMO15061 1565 aa17.65■□□□□ 0.42
NEK3-204ENST00000552973 CHGAP10645 457 aaKnown RBP17.64■□□□□ 0.41
NEK3-204ENST00000552973 KCNA6P17658 529 aa17.64■□□□□ 0.41
NEK3-204ENST00000552973 PROSER2Q86WR7 435 aaPredicted RBP17.63■□□□□ 0.41
NEK3-204ENST00000552973 PHF23Q9BUL5 403 aaPredicted RBP17.61■□□□□ 0.41
NEK3-204ENST00000552973 TMEM94Q12767 1356 aa17.61■□□□□ 0.41
NEK3-204ENST00000552973 MED1Q15648 1581 aaPredicted RBP17.61■□□□□ 0.41
NEK3-204ENST00000552973 PPP1R15AO75807 674 aaPredicted RBP17.6■□□□□ 0.41
NEK3-204ENST00000552973 NUTM2DQ5VT03 806 aaPredicted RBP17.6■□□□□ 0.41
NEK3-204ENST00000552973 ADGRB3O60242 1522 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms