RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 ADGBQ8N7X0 1667 aa19.27■□□□□ 0.68
COPA-205ENST00000541366 SHANK2Q9UPX8 1470 aa19.25■□□□□ 0.67
COPA-205ENST00000541366 TOM1O60784 492 aa19.25■□□□□ 0.67
COPA-205ENST00000541366 POLR1AO95602 1720 aaPredicted RBP19.25■□□□□ 0.67
COPA-205ENST00000541366 MBD5Q9P267 1494 aa19.24■□□□□ 0.67
COPA-205ENST00000541366 TNRQ92752 1358 aa19.24■□□□□ 0.67
COPA-205ENST00000541366 MTUS2Q5JR59 1369 aa19.23■□□□□ 0.67
COPA-205ENST00000541366 CPS1P31327 1500 aa19.23■□□□□ 0.67
COPA-205ENST00000541366 DHX29Q7Z478 1369 aaKnown RBP19.22■□□□□ 0.67
COPA-205ENST00000541366 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.22■□□□□ 0.67
COPA-205ENST00000541366 KIF3BO15066 747 aa19.22■□□□□ 0.67
COPA-205ENST00000541366 TIAM1Q13009 1591 aa19.21■□□□□ 0.67
COPA-205ENST00000541366 ALKQ9UM73 1620 aa19.2■□□□□ 0.66
COPA-205ENST00000541366 VWDEQ8N2E2 1590 aa19.19■□□□□ 0.66
COPA-205ENST00000541366 RTEL1-TNFRSF6BF6WH68 1400 aa19.18■□□□□ 0.66
COPA-205ENST00000541366 PZPP20742 1482 aa19.18■□□□□ 0.66
COPA-205ENST00000541366 ANKLE2Q86XL3 938 aa19.18■□□□□ 0.66
COPA-205ENST00000541366 WASHC2CQ9Y4E1 1318 aa19.16■□□□□ 0.66
COPA-205ENST00000541366 KDM5DQ9BY66 1539 aa19.15■□□□□ 0.66
COPA-205ENST00000541366 NPHP4O75161 1426 aaPredicted RBP19.15■□□□□ 0.66
COPA-205ENST00000541366 MIA2Q96PC5 1412 aa19.15■□□□□ 0.66
COPA-205ENST00000541366 THEMISQ8N1K5 641 aaPredicted RBP19.14■□□□□ 0.65
COPA-205ENST00000541366 UGGT1Q9NYU2 1555 aa19.13■□□□□ 0.65
COPA-205ENST00000541366 STRCP1A6NGW2 1772 aa19.12■□□□□ 0.65
COPA-205ENST00000541366 MED14O60244 1454 aa19.11■□□□□ 0.65
COPA-205ENST00000541366 EHBP1L1Q8N3D4 1523 aa19.1■□□□□ 0.65
COPA-205ENST00000541366 CCDC141Q6ZP82 1450 aa19.1■□□□□ 0.65
COPA-205ENST00000541366 FAM135AQ9P2D6 1515 aa19.1■□□□□ 0.65
COPA-205ENST00000541366 NLRP1Q9C000 1473 aa19.09■□□□□ 0.65
COPA-205ENST00000541366 CEP162Q5TB80 1403 aa19.09■□□□□ 0.65
COPA-205ENST00000541366 DEPDC5O75140 1603 aa19.09■□□□□ 0.65
COPA-205ENST00000541366 IQGAP1P46940 1657 aa19.08■□□□□ 0.65
COPA-205ENST00000541366 LRRC7Q96NW7 1537 aa19.08■□□□□ 0.64
COPA-205ENST00000541366 CAMSAP2Q08AD1 1489 aa19.08■□□□□ 0.64
COPA-205ENST00000541366 RGS17Q9UGC6 210 aaPredicted RBP19.04■□□□□ 0.64
COPA-205ENST00000541366 NCOA2Q15596 1464 aa19.03■□□□□ 0.64
COPA-205ENST00000541366 RNF17Q9BXT8 1623 aaKnown RBP19.01■□□□□ 0.63
COPA-205ENST00000541366 CFAP65Q6ZU64 1925 aaKnown RBP19.01■□□□□ 0.63
COPA-205ENST00000541366 ABCC3O15438 1527 aa19■□□□□ 0.63
COPA-205ENST00000541366 RSPH4AQ5TD94 716 aa19■□□□□ 0.63
COPA-205ENST00000541366 ERVK-7P63135 1459 aa18.99■□□□□ 0.63
COPA-205ENST00000541366 ZC3H13Q5T200 1668 aaKnown RBP18.98■□□□□ 0.63
COPA-205ENST00000541366 SYNMO15061 1565 aa18.98■□□□□ 0.63
COPA-205ENST00000541366 TSPY4P0CV99 314 aa18.98■□□□□ 0.63
COPA-205ENST00000541366 TSPY10P0CW01 314 aa18.98■□□□□ 0.63
COPA-205ENST00000541366 ARHGEF5Q12774 1597 aa18.98■□□□□ 0.63
COPA-205ENST00000541366 LTKP29376 864 aa18.97■□□□□ 0.63
COPA-205ENST00000541366 UBR1Q8IWV7 1749 aa18.95■□□□□ 0.62
COPA-205ENST00000541366 MROH1Q8NDA8 1641 aa18.94■□□□□ 0.62
COPA-205ENST00000541366 XIRP1Q702N8 1843 aaKnown RBP18.94■□□□□ 0.62
COPA-205ENST00000541366 CEP152O94986 1710 aa18.94■□□□□ 0.62
COPA-205ENST00000541366 SCAF11Q99590 1463 aaKnown RBP18.93■□□□□ 0.62
COPA-205ENST00000541366 TXNDC2Q86VQ3 553 aa18.92■□□□□ 0.62
COPA-205ENST00000541366 POTEAQ6S8J7 498 aa18.91■□□□□ 0.62
COPA-205ENST00000541366 ARHGAP23Q9P227 1491 aa18.89■□□□□ 0.61
COPA-205ENST00000541366 MAST1Q9Y2H9 1570 aa18.89■□□□□ 0.61
COPA-205ENST00000541366 SLIT1O75093 1534 aa18.87■□□□□ 0.61
COPA-205ENST00000541366 EIF2AK4Q9P2K8 1649 aaKnown RBP18.87■□□□□ 0.61
COPA-205ENST00000541366 RBM33Q96EV2 1170 aaKnown RBP18.86■□□□□ 0.61
COPA-205ENST00000541366 FAM135BQ49AJ0 1406 aa18.84■□□□□ 0.61
COPA-205ENST00000541366 TMEM94Q12767 1356 aa18.83■□□□□ 0.61
COPA-205ENST00000541366 EID1Q9Y6B2 187 aa18.83■□□□□ 0.6
COPA-205ENST00000541366 LRRC9Q6ZRR7 1453 aa18.83■□□□□ 0.6
COPA-205ENST00000541366 PIK3C2BO00750 1634 aa18.82■□□□□ 0.6
COPA-205ENST00000541366 KANK4Q5T7N3 995 aaPredicted RBP18.82■□□□□ 0.6
COPA-205ENST00000541366 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.81■□□□□ 0.63e-10■□□□□ 9.1
COPA-205ENST00000541366 TMEM2Q9UHN6 1383 aa18.81■□□□□ 0.6
COPA-205ENST00000541366 DUOX2Q9NRD8 1548 aa18.8■□□□□ 0.6
COPA-205ENST00000541366 SLC26A8Q96RN1 970 aa18.8■□□□□ 0.6
COPA-205ENST00000541366 ARHGAP31Q2M1Z3 1444 aa18.8■□□□□ 0.6
COPA-205ENST00000541366 ROBO1Q9Y6N7 1651 aa18.79■□□□□ 0.6
COPA-205ENST00000541366 PROSER2Q86WR7 435 aaPredicted RBP18.78■□□□□ 0.6
COPA-205ENST00000541366 RRP7BPQ9NSQ0 103 aa18.78■□□□□ 0.6
COPA-205ENST00000541366 STAG3Q9UJ98 1225 aa18.78■□□□□ 0.6
COPA-205ENST00000541366 MAP3K1Q13233 1512 aa18.78■□□□□ 0.6
COPA-205ENST00000541366 KIF15Q9NS87 1388 aa18.78■□□□□ 0.6
COPA-205ENST00000541366 SETD1AO15047 1707 aaKnown RBP18.77■□□□□ 0.6
COPA-205ENST00000541366 KCNA6P17658 529 aa18.77■□□□□ 0.6
COPA-205ENST00000541366 PRDM15P57071 1507 aaPredicted RBP18.77■□□□□ 0.6
COPA-205ENST00000541366 IDI1Q13907 227 aa18.76■□□□□ 0.59
COPA-205ENST00000541366 MYOM3Q5VTT5 1437 aa18.75■□□□□ 0.59
COPA-205ENST00000541366 EFCAB6Q5THR3 1501 aa18.74■□□□□ 0.59
COPA-205ENST00000541366 TET3O43151 1660 aa18.73■□□□□ 0.59
COPA-205ENST00000541366 ABCC5O15440 1437 aa18.72■□□□□ 0.59
COPA-205ENST00000541366 VPS8Q8N3P4 1428 aa18.72■□□□□ 0.59
COPA-205ENST00000541366 ERBINQ96RT1 1412 aa18.72■□□□□ 0.59
COPA-205ENST00000541366 ADRA2BP18089 450 aa18.7■□□□□ 0.58
COPA-205ENST00000541366 CROCC2H7BZ55 1655 aa18.69■□□□□ 0.58
COPA-205ENST00000541366 BCANQ96GW7 911 aa18.68■□□□□ 0.58
COPA-205ENST00000541366 SLAIN2Q9P270 581 aa18.68■□□□□ 0.58
COPA-205ENST00000541366 PHLPP1O60346 1717 aa18.68■□□□□ 0.58
COPA-205ENST00000541366 KANK1Q14678 1352 aa18.68■□□□□ 0.58
COPA-205ENST00000541366 CHIC2Q9UKJ5 165 aa18.67■□□□□ 0.58
COPA-205ENST00000541366 NWD1Q149M9 1564 aa18.67■□□□□ 0.58
COPA-205ENST00000541366 MSH6P52701 1360 aa18.67■□□□□ 0.58
COPA-205ENST00000541366 KDM5AP29375 1690 aaKnown RBP18.66■□□□□ 0.58
COPA-205ENST00000541366 NKTRP30414 1462 aaKnown RBP18.66■□□□□ 0.58
COPA-205ENST00000541366 LOC105371045A0A1W2PR82 267 aa18.66■□□□□ 0.58
COPA-205ENST00000541366 JCADQ9P266 1359 aa18.66■□□□□ 0.58
COPA-205ENST00000541366 DAPK1P53355 1430 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms