RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.3□□□□□ -0.62e-15■■■■■ 52.9
COPA-205ENST00000541366 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.93□□□□□ -0.181e-14■■■■■ 30
COPA-205ENST00000541366 DDX3XO00571 662 aaKnown RBP eCLIP11.46□□□□□ -0.572e-14■■□□□ 13.7
COPA-205ENST00000541366 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.46■□□□□ 0.233e-14■□□□□ 10.2
COPA-205ENST00000541366 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.38□□□□□ -0.113e-14■□□□□ 9.7
COPA-205ENST00000541366 G3BP1Q13283 466 aaKnown RBP eCLIP14.46□□□□□ -0.097e-14■■■■□ 19.5
COPA-205ENST00000541366 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.43□□□□□ -0.421e-13■■■■■ 30.3
COPA-205ENST00000541366 KHSRPQ92945 711 aaKnown RBP eCLIP14.18□□□□□ -0.144e-13■■□□□ 12.7
COPA-205ENST00000541366 ILF3Q12906 894 aaKnown RBP eCLIP11.8□□□□□ -0.521e-10■■■■■ 35.6
COPA-205ENST00000541366 FXR2P51116 673 aaKnown RBP eCLIP13.35□□□□□ -0.273e-10■■■■□ 20.2
COPA-205ENST00000541366 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.81■□□□□ 0.63e-10■□□□□ 9.1
COPA-205ENST00000541366 YBX3P16989 372 aaKnown RBP eCLIP16.97■□□□□ 0.318e-10■□□□□ 11.1
COPA-205ENST00000541366 TIA1P31483 386 aaKnown RBP eCLIP10.38□□□□□ -0.751e-9■■■□□ 17.4
COPA-205ENST00000541366 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.11□□□□□ -0.152e-9■□□□□ 9.7
COPA-205ENST00000541366 FXR1P51114 621 aaKnown RBP eCLIP15.29■□□□□ 0.047e-9■■■■□ 24.2
COPA-205ENST00000541366 RPS3P23396 243 aaKnown RBP eCLIP11.02□□□□□ -0.653e-8■■■■□ 24.5
COPA-205ENST00000541366 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.72□□□□□ -0.694e-8■■■■□ 22.1
COPA-205ENST00000541366 EFTUD2Q15029 972 aaKnown RBP eCLIP10.77□□□□□ -0.695e-8■■■■□ 22
COPA-205ENST00000541366 SF3A3Q12874 501 aaKnown RBP eCLIP9.42□□□□□ -0.98e-8■□□□□ 9.9
COPA-205ENST00000541366 AQRO60306 1485 aaKnown RBP eCLIP22.35■■□□□ 1.171e-7■■■□□ 17.9
COPA-205ENST00000541366 FMR1Q06787 632 aaKnown RBP eCLIP15.99■□□□□ 0.151e-7■■■□□ 17.6
COPA-205ENST00000541366 TIAL1Q01085 375 aaKnown RBP eCLIP10.88□□□□□ -0.673e-7■■■■□ 25.5
COPA-205ENST00000541366 QKIQ96PU8 341 aaKnown RBP eCLIP11.23□□□□□ -0.613e-7■■■□□ 15.9
COPA-205ENST00000541366 PPIGQ13427 754 aaKnown RBP eCLIP14.29□□□□□ -0.123e-7■■■□□ 16.4
COPA-205ENST00000541366 AARSP49588 968 aaKnown RBP eCLIP12.83□□□□□ -0.364e-7■□□□□ 9.5
COPA-205ENST00000541366 SND1Q7KZF4 910 aaKnown RBP eCLIP12.24□□□□□ -0.454e-7■□□□□ 10.7
COPA-205ENST00000541366 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.09□□□□□ -0.631e-6■□□□□ 10.8
COPA-205ENST00000541366 GPKOWQ92917 476 aaPredicted RBP eCLIP13.8□□□□□ -0.22e-6■■■■■ 37.1
COPA-205ENST00000541366 U2AF2P26368 475 aaKnown RBP eCLIP12.89□□□□□ -0.353e-6■■■■□ 20.6
COPA-205ENST00000541366 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.33□□□□□ -0.64e-6■■□□□ 14.1
COPA-205ENST00000541366 RBM22Q9NW64 420 aaKnown RBP eCLIP11.53□□□□□ -0.564e-6■■■■□ 24.6
COPA-205ENST00000541366 SF3B4Q15427 424 aaKnown RBP eCLIP10.74□□□□□ -0.694e-6■■■■■ 56
COPA-205ENST00000541366 SF3B1O75533 1304 aaKnown RBP eCLIP13.12□□□□□ -0.316e-6■■■■■ 46.6
COPA-205ENST00000541366 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.59□□□□□ -0.877e-6■□□□□ 9.2
Retrieved 34 of 34 RNA–protein pairs in 11.9 ms