RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 PTPRKQ15262 1439 aa22.93■■□□□ 1.26
USP28-204ENST00000537642 KDM5DQ9BY66 1539 aa22.92■■□□□ 1.26
USP28-204ENST00000537642 DUOX2Q9NRD8 1548 aa22.92■■□□□ 1.26
USP28-204ENST00000537642 FAM135AQ9P2D6 1515 aa22.92■■□□□ 1.26
USP28-204ENST00000537642 KIF15Q9NS87 1388 aa22.91■■□□□ 1.26
USP28-204ENST00000537642 FAM50AQ14320 339 aaKnown RBP22.89■■□□□ 1.25
USP28-204ENST00000537642 RRP7BPQ9NSQ0 103 aa22.89■■□□□ 1.25
USP28-204ENST00000537642 WASHC2CQ9Y4E1 1318 aa22.88■■□□□ 1.25
USP28-204ENST00000537642 MROH1Q8NDA8 1641 aa22.87■■□□□ 1.25
USP28-204ENST00000537642 PPARGC1BQ86YN6 1023 aaKnown RBP22.87■■□□□ 1.25
USP28-204ENST00000537642 CHIC2Q9UKJ5 165 aa22.87■■□□□ 1.25
USP28-204ENST00000537642 STRCQ7RTU9 1775 aa22.86■■□□□ 1.25
USP28-204ENST00000537642 MYO3AQ8NEV4 1616 aa22.86■■□□□ 1.25
USP28-204ENST00000537642 ERBINQ96RT1 1412 aa22.85■■□□□ 1.25
USP28-204ENST00000537642 ANKRD30AQ9BXX3 1397 aa22.85■■□□□ 1.25
USP28-204ENST00000537642 PZPP20742 1482 aa22.85■■□□□ 1.25
USP28-204ENST00000537642 ABCC3O15438 1527 aa22.84■■□□□ 1.25
USP28-204ENST00000537642 NCOA1Q15788 1441 aa22.83■■□□□ 1.25
USP28-204ENST00000537642 ZNF142P52746 1687 aaPredicted RBP22.83■■□□□ 1.24
USP28-204ENST00000537642 ZC3H13Q5T200 1668 aaKnown RBP22.83■■□□□ 1.24
USP28-204ENST00000537642 ADGRL2O95490 1459 aa22.82■■□□□ 1.24
USP28-204ENST00000537642 FBXO31Q5XUX0 539 aaPredicted RBP22.82■■□□□ 1.24
USP28-204ENST00000537642 CEP170BQ9Y4F5 1589 aaPredicted RBP22.8■■□□□ 1.24
USP28-204ENST00000537642 CEP152O94986 1710 aa22.8■■□□□ 1.24
USP28-204ENST00000537642 PRDM15P57071 1507 aaPredicted RBP22.79■■□□□ 1.24
USP28-204ENST00000537642 TNRQ92752 1358 aa22.78■■□□□ 1.24
USP28-204ENST00000537642 DEPDC5O75140 1603 aa22.78■■□□□ 1.24
USP28-204ENST00000537642 CAMSAP1Q5T5Y3 1602 aa22.78■■□□□ 1.24
USP28-204ENST00000537642 A2ML1A8K2U0 1454 aa22.75■■□□□ 1.23
USP28-204ENST00000537642 DMRT2Q9Y5R5 561 aa22.74■■□□□ 1.23
USP28-204ENST00000537642 CFAP65Q6ZU64 1925 aaKnown RBP22.72■■□□□ 1.23
USP28-204ENST00000537642 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.72■■□□□ 1.23
USP28-204ENST00000537642 PTPRTO14522 1441 aa22.72■■□□□ 1.23
USP28-204ENST00000537642 SPATA31D1Q6ZQQ2 1576 aa22.72■■□□□ 1.23
USP28-204ENST00000537642 ILDR1Q86SU0 546 aaPredicted RBP22.71■■□□□ 1.23
USP28-204ENST00000537642 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.71■■□□□ 1.23
USP28-204ENST00000537642 ERVK-7P63135 1459 aa22.7■■□□□ 1.22
USP28-204ENST00000537642 PLA2R1Q13018 1463 aa22.7■■□□□ 1.22
USP28-204ENST00000537642 VWDEQ8N2E2 1590 aa22.69■■□□□ 1.22
USP28-204ENST00000537642 ANKRD50Q9ULJ7 1429 aa22.69■■□□□ 1.22
USP28-204ENST00000537642 NLRP1Q9C000 1473 aa22.68■■□□□ 1.22
USP28-204ENST00000537642 ARHGAP31Q2M1Z3 1444 aa22.68■■□□□ 1.22
USP28-204ENST00000537642 KANK1Q14678 1352 aa22.68■■□□□ 1.22
USP28-204ENST00000537642 NCKAP5LQ9HCH0 1330 aa22.68■■□□□ 1.22
USP28-204ENST00000537642 ROCK1Q13464 1354 aa22.67■■□□□ 1.22
USP28-204ENST00000537642 LMTK2Q8IWU2 1503 aa22.66■■□□□ 1.22
USP28-204ENST00000537642 ITGAEP38570 1179 aa22.65■■□□□ 1.22
USP28-204ENST00000537642 RRBP1Q9P2E9 1410 aaKnown RBP22.65■■□□□ 1.22
USP28-204ENST00000537642 PKD2Q13563 968 aa22.64■■□□□ 1.21
USP28-204ENST00000537642 UGGT1Q9NYU2 1555 aa22.63■■□□□ 1.21
USP28-204ENST00000537642 THEMISQ8N1K5 641 aaPredicted RBP22.59■■□□□ 1.21
USP28-204ENST00000537642 CERKQ8TCT0 537 aa22.59■■□□□ 1.21
USP28-204ENST00000537642 POLR1AO95602 1720 aaPredicted RBP22.59■■□□□ 1.21
USP28-204ENST00000537642 UNC13BO14795 1591 aa22.59■■□□□ 1.21
USP28-204ENST00000537642 EFCAB6Q5THR3 1501 aa22.58■■□□□ 1.21
USP28-204ENST00000537642 FBXO41Q8TF61 875 aa22.58■■□□□ 1.21
USP28-204ENST00000537642 NEURL4Q96JN8 1562 aa22.56■■□□□ 1.2
USP28-204ENST00000537642 UBR1Q8IWV7 1749 aa22.55■■□□□ 1.2
USP28-204ENST00000537642 LTBP4Q8N2S1 1624 aa22.55■■□□□ 1.2
USP28-204ENST00000537642 TET3O43151 1660 aa22.53■■□□□ 1.2
USP28-204ENST00000537642 ANKLE2Q86XL3 938 aa22.53■■□□□ 1.2
USP28-204ENST00000537642 SYNMO15061 1565 aa22.52■■□□□ 1.2
USP28-204ENST00000537642 NOS1P29475 1434 aa22.52■■□□□ 1.2
USP28-204ENST00000537642 PIK3C2BO00750 1634 aa22.51■■□□□ 1.19
USP28-204ENST00000537642 GCC2Q8IWJ2 1684 aa22.5■■□□□ 1.19
USP28-204ENST00000537642 RPRD2Q5VT52 1461 aaKnown RBP22.49■■□□□ 1.19
USP28-204ENST00000537642 ZNF335Q9H4Z2 1342 aaPredicted RBP22.49■■□□□ 1.19
USP28-204ENST00000537642 IQGAP3Q86VI3 1631 aa22.49■■□□□ 1.19
USP28-204ENST00000537642 MED14O60244 1454 aa22.47■■□□□ 1.19
USP28-204ENST00000537642 IDI1Q13907 227 aa22.47■■□□□ 1.19
USP28-204ENST00000537642 NUP155O75694 1391 aa22.46■■□□□ 1.19
USP28-204ENST00000537642 NPHP4O75161 1426 aaPredicted RBP22.46■■□□□ 1.19
USP28-204ENST00000537642 ARHGAP23Q9P227 1491 aa22.45■■□□□ 1.18
USP28-204ENST00000537642 SLIT1O75093 1534 aa22.45■■□□□ 1.18
USP28-204ENST00000537642 E9PCH4 1651 aa22.45■■□□□ 1.18
USP28-204ENST00000537642 KDM5AP29375 1690 aaKnown RBP22.44■■□□□ 1.18
USP28-204ENST00000537642 IQGAP1P46940 1657 aa22.44■■□□□ 1.18
USP28-204ENST00000537642 NAIPQ13075 1403 aa22.44■■□□□ 1.18
USP28-204ENST00000537642 SCAF11Q99590 1463 aaKnown RBP22.41■■□□□ 1.18
USP28-204ENST00000537642 LTKP29376 864 aa22.41■■□□□ 1.18
USP28-204ENST00000537642 SLC52A1Q9NWF4 448 aa22.41■■□□□ 1.18
USP28-204ENST00000537642 STAG3Q9UJ98 1225 aa22.41■■□□□ 1.18
USP28-204ENST00000537642 ADGRB3O60242 1522 aa22.4■■□□□ 1.18
USP28-204ENST00000537642 TMEM2Q9UHN6 1383 aa22.39■■□□□ 1.18
USP28-204ENST00000537642 TXNDC2Q86VQ3 553 aa22.39■■□□□ 1.17
USP28-204ENST00000537642 IQSEC2Q5JU85 1478 aa22.39■■□□□ 1.17
USP28-204ENST00000537642 HFM1A2PYH4 1435 aa22.38■■□□□ 1.17
USP28-204ENST00000537642 MYO5BQ9ULV0 1848 aa22.36■■□□□ 1.17
USP28-204ENST00000537642 EID1Q9Y6B2 187 aa22.35■■□□□ 1.17
USP28-204ENST00000537642 TMEM131LA2VDJ0 1609 aa22.33■■□□□ 1.17
USP28-204ENST00000537642 CPS1P31327 1500 aa22.32■■□□□ 1.16
USP28-204ENST00000537642 STRCP1A6NGW2 1772 aa22.3■■□□□ 1.16
USP28-204ENST00000537642 SPHKAPQ2M3C7 1700 aa22.29■■□□□ 1.16
USP28-204ENST00000537642 ZFYVE9O95405 1425 aa22.28■■□□□ 1.16
USP28-204ENST00000537642 CHGAP10645 457 aaKnown RBP22.26■■□□□ 1.15
USP28-204ENST00000537642 TRIM52Q96A61 297 aa22.25■■□□□ 1.15
USP28-204ENST00000537642 RIMS2Q9UQ26 1411 aa22.24■■□□□ 1.15
USP28-204ENST00000537642 UBAP1LF5GYI3 381 aa22.21■■□□□ 1.15
USP28-204ENST00000537642 LRRC7Q96NW7 1537 aa22.21■■□□□ 1.15
USP28-204ENST00000537642 SLC26A8Q96RN1 970 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms