RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 NISCHQ9Y2I1 1504 aa36.41■■■■□ 3.42
USP28-204ENST00000537642 CCDC180Q9P1Z9 1646 aa32.46■■■□□ 2.79
USP28-204ENST00000537642 ABCC9O60706 1549 aa31.99■■■□□ 2.71
USP28-204ENST00000537642 RB1CC1Q8TDY2 1594 aa30.66■■■□□ 2.5
USP28-204ENST00000537642 NACADO15069 1562 aa30.57■■■□□ 2.48
USP28-204ENST00000537642 DCAF8L2P0C7V8 631 aa30.48■■■□□ 2.47
USP28-204ENST00000537642 MYO15BQ96JP2 1530 aa30.31■■■□□ 2.44
USP28-204ENST00000537642 ZCCHC6Q5VYS8 1495 aaKnown RBP30.28■■■□□ 2.44
USP28-204ENST00000537642 DCAF1Q9Y4B6 1507 aa30.1■■■□□ 2.41
USP28-204ENST00000537642 UNC13AQ9UPW8 1703 aa30.02■■■□□ 2.4
USP28-204ENST00000537642 PABPN1Q86U42 306 aaKnown RBP eCLIP29.86■■■□□ 2.37
USP28-204ENST00000537642 BICRAQ9NZM4 1560 aa29.78■■■□□ 2.36
USP28-204ENST00000537642 SCRIBQ14160 1630 aa29.61■■■□□ 2.33
USP28-204ENST00000537642 DNAJC5BQ9UF47 199 aa29.61■■■□□ 2.33
USP28-204ENST00000537642 SHROOM4Q9ULL8 1493 aa29.38■■■□□ 2.29
USP28-204ENST00000537642 EIF4G1Q04637 1599 aaKnown RBP28.99■■■□□ 2.23
USP28-204ENST00000537642 CC2D2AQ9P2K1 1620 aa28.94■■■□□ 2.22
USP28-204ENST00000537642 CECR2Q9BXF3 1484 aa28.76■■■□□ 2.19
USP28-204ENST00000537642 SMARCA4P51532 1647 aa28.3■■■□□ 2.12
USP28-204ENST00000537642 NCAPD3P42695 1498 aa28.21■■■□□ 2.11
USP28-204ENST00000537642 BAZ1AQ9NRL2 1556 aaPredicted RBP28.21■■■□□ 2.11
USP28-204ENST00000537642 ATAD2BQ9ULI0 1458 aa28.21■■■□□ 2.11
USP28-204ENST00000537642 SMARCA2P51531 1590 aa28.14■■■□□ 2.1
USP28-204ENST00000537642 MROH2BQ7Z745 1585 aa28.07■■■□□ 2.08
USP28-204ENST00000537642 HMGXB3Q12766 1538 aa28.05■■■□□ 2.08
USP28-204ENST00000537642 PEG3Q9GZU2 1588 aa28.03■■■□□ 2.08
USP28-204ENST00000537642 BAZ1BQ9UIG0 1483 aaKnown RBP27.95■■■□□ 2.06
USP28-204ENST00000537642 WIZO95785 1651 aa27.76■■■□□ 2.03
USP28-204ENST00000537642 RSF1Q96T23 1441 aaPredicted RBP27.66■■■□□ 2.02
USP28-204ENST00000537642 NESP48681 1621 aa27.63■■■□□ 2.01
USP28-204ENST00000537642 ERCC6Q03468 1493 aa27.57■■■□□ 2
USP28-204ENST00000537642 LAMC3Q9Y6N6 1575 aa27.5■■□□□ 1.99
USP28-204ENST00000537642 TOP2AP11388 1531 aaKnown RBP27.43■■□□□ 1.98
USP28-204ENST00000537642 CADPSQ9ULU8 1353 aa27.37■■□□□ 1.97
USP28-204ENST00000537642 CUX2O14529 1486 aa27.37■■□□□ 1.97
USP28-204ENST00000537642 PDS5BQ9NTI5 1447 aa27.31■■□□□ 1.96
USP28-204ENST00000537642 KIF21AQ7Z4S6 1674 aa27.3■■□□□ 1.96
USP28-204ENST00000537642 THOC2Q8NI27 1593 aaKnown RBP27.26■■□□□ 1.96
USP28-204ENST00000537642 CFTRP13569 1480 aa27.17■■□□□ 1.94
USP28-204ENST00000537642 CCDC88BA6NC98 1476 aa27.12■■□□□ 1.93
USP28-204ENST00000537642 FANCD2Q9BXW9 1451 aa27.06■■□□□ 1.92
USP28-204ENST00000537642 MRC2Q9UBG0 1479 aa27.06■■□□□ 1.92
USP28-204ENST00000537642 CEP164Q9UPV0 1460 aa27.05■■□□□ 1.92
USP28-204ENST00000537642 WDR62O43379 1518 aa26.99■■□□□ 1.91
USP28-204ENST00000537642 PRDM2Q13029 1718 aa26.97■■□□□ 1.91
USP28-204ENST00000537642 URB2Q14146 1524 aaKnown RBP26.83■■□□□ 1.89
USP28-204ENST00000537642 DNAJC5Q9H3Z4 198 aa26.81■■□□□ 1.88
USP28-204ENST00000537642 SUPT5HO00267 1087 aaKnown RBP26.77■■□□□ 1.88
USP28-204ENST00000537642 TOPBP1Q92547 1522 aa26.62■■□□□ 1.85
USP28-204ENST00000537642 ABCC8Q09428 1581 aa26.57■■□□□ 1.84
USP28-204ENST00000537642 DNMBPQ6XZF7 1577 aa26.56■■□□□ 1.84
USP28-204ENST00000537642 IFT140Q96RY7 1462 aa26.49■■□□□ 1.83
USP28-204ENST00000537642 ZNF608Q9ULD9 1512 aaPredicted RBP26.42■■□□□ 1.82
USP28-204ENST00000537642 POLA1P09884 1462 aaPredicted RBP26.37■■□□□ 1.81
USP28-204ENST00000537642 TARBP1Q13395 1621 aaKnown RBP26.36■■□□□ 1.81
USP28-204ENST00000537642 CUX1P39880 1505 aa26.34■■□□□ 1.81
USP28-204ENST00000537642 EIF4G3O43432 1585 aaKnown RBP26.29■■□□□ 1.8
USP28-204ENST00000537642 FGD5Q6ZNL6 1462 aa26.28■■□□□ 1.8
USP28-204ENST00000537642 RAD54L2Q9Y4B4 1467 aa26.28■■□□□ 1.8
USP28-204ENST00000537642 SOGA1O94964 1423 aa26.25■■□□□ 1.79
USP28-204ENST00000537642 AQRO60306 1485 aaKnown RBP eCLIP26.23■■□□□ 1.796e-6■■■■□ 25.1
USP28-204ENST00000537642 OSCARQ8IYS5 282 aa26.18■■□□□ 1.78
USP28-204ENST00000537642 TDRD9Q8NDG6 1382 aaKnown RBP26.14■■□□□ 1.78
USP28-204ENST00000537642 WDR97A6NE52 1622 aa26.1■■□□□ 1.77
USP28-204ENST00000537642 WRNQ14191 1432 aaPredicted RBP eCLIP26.06■■□□□ 1.76
USP28-204ENST00000537642 TOP2BQ02880 1626 aa26.05■■□□□ 1.76
USP28-204ENST00000537642 BIVM-ERCC5R4GMW8 1640 aa26.05■■□□□ 1.76
USP28-204ENST00000537642 SYNJ1O43426 1573 aa26.04■■□□□ 1.76
USP28-204ENST00000537642 CHD1O14646 1710 aa26.02■■□□□ 1.76
USP28-204ENST00000537642 ABCA10Q8WWZ4 1543 aa26.01■■□□□ 1.75
USP28-204ENST00000537642 SNAPC4Q5SXM2 1469 aa25.98■■□□□ 1.75
USP28-204ENST00000537642 GRIN2BQ13224 1484 aa25.97■■□□□ 1.75
USP28-204ENST00000537642 GAPVD1Q14C86 1478 aa25.94■■□□□ 1.74
USP28-204ENST00000537642 FBLN2P98095 1184 aa25.94■■□□□ 1.74
USP28-204ENST00000537642 ABCA5Q8WWZ7 1642 aa25.94■■□□□ 1.74
USP28-204ENST00000537642 PBRM1Q86U86 1689 aa25.93■■□□□ 1.74
USP28-204ENST00000537642 MAGI1Q96QZ7 1491 aaPredicted RBP25.92■■□□□ 1.74
USP28-204ENST00000537642 CHMP7Q8WUX9 453 aaPredicted RBP25.83■■□□□ 1.73
USP28-204ENST00000537642 SYNJ2O15056 1496 aa25.83■■□□□ 1.73
USP28-204ENST00000537642 RIMBP3CA6NJZ7 1639 aa25.82■■□□□ 1.72
USP28-204ENST00000537642 RIMBP3BA6NNM3 1639 aa25.82■■□□□ 1.72
USP28-204ENST00000537642 RIMBP3Q9UFD9 1639 aa25.82■■□□□ 1.72
USP28-204ENST00000537642 TRIM41Q8WV44 630 aa25.82■■□□□ 1.72
USP28-204ENST00000537642 ARHGEF11O15085 1522 aa25.78■■□□□ 1.72
USP28-204ENST00000537642 CLASP1Q7Z460 1538 aa25.73■■□□□ 1.71
USP28-204ENST00000537642 ADAMTS12P58397 1594 aa25.7■■□□□ 1.71
USP28-204ENST00000537642 ERICH3Q5RHP9 1530 aa25.68■■□□□ 1.7
USP28-204ENST00000537642 GRIN2AQ12879 1464 aa25.64■■□□□ 1.69
USP28-204ENST00000537642 FHAD1B1AJZ9 1412 aa25.63■■□□□ 1.69
USP28-204ENST00000537642 ARAP1Q96P48 1450 aa25.58■■□□□ 1.69
USP28-204ENST00000537642 CYB5RLQ6IPT4 315 aa25.55■■□□□ 1.68
USP28-204ENST00000537642 CEP170Q5SW79 1584 aa25.55■■□□□ 1.68
USP28-204ENST00000537642 NUP160Q12769 1436 aa25.54■■□□□ 1.68
USP28-204ENST00000537642 KIF27Q86VH2 1401 aa25.53■■□□□ 1.68
USP28-204ENST00000537642 IGF1RP08069 1367 aa25.48■■□□□ 1.67
USP28-204ENST00000537642 CUL7Q14999 1698 aa25.41■■□□□ 1.66
USP28-204ENST00000537642 SHROOM2Q13796 1616 aa25.39■■□□□ 1.66
USP28-204ENST00000537642 ERCC6L2Q5T890 1561 aa25.38■■□□□ 1.65
USP28-204ENST00000537642 RUSC2Q8N2Y8 1516 aa25.32■■□□□ 1.64
USP28-204ENST00000537642 CARMIL1Q5VZK9 1371 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms