RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 RSPH4AQ5TD94 716 aa19.66■□□□□ 0.74
PRKDC-207ENST00000536483 TCOF1Q13428 1488 aaKnown RBP19.66■□□□□ 0.74
PRKDC-207ENST00000536483 FBXO31Q5XUX0 539 aaPredicted RBP19.65■□□□□ 0.74
PRKDC-207ENST00000536483 A2ML1A8K2U0 1454 aa19.63■□□□□ 0.73
PRKDC-207ENST00000536483 WASHC2CQ9Y4E1 1318 aa19.62■□□□□ 0.73
PRKDC-207ENST00000536483 ILDR2Q71H61 639 aa19.62■□□□□ 0.73
PRKDC-207ENST00000536483 TSPY4P0CV99 314 aa19.61■□□□□ 0.73
PRKDC-207ENST00000536483 TSPY10P0CW01 314 aa19.61■□□□□ 0.73
PRKDC-207ENST00000536483 TNRQ92752 1358 aa19.6■□□□□ 0.73
PRKDC-207ENST00000536483 KANK4Q5T7N3 995 aaPredicted RBP19.6■□□□□ 0.73
PRKDC-207ENST00000536483 DNMT1P26358 1616 aaKnown RBP19.6■□□□□ 0.73
PRKDC-207ENST00000536483 UBAP1LF5GYI3 381 aa19.59■□□□□ 0.73
PRKDC-207ENST00000536483 KDM5DQ9BY66 1539 aa19.59■□□□□ 0.73
PRKDC-207ENST00000536483 PZPP20742 1482 aa19.58■□□□□ 0.72
PRKDC-207ENST00000536483 ARHGEF5Q12774 1597 aa19.57■□□□□ 0.72
PRKDC-207ENST00000536483 FAM135AQ9P2D6 1515 aa19.55■□□□□ 0.72
PRKDC-207ENST00000536483 MIA2Q96PC5 1412 aa19.53■□□□□ 0.72
PRKDC-207ENST00000536483 SPATA31D1Q6ZQQ2 1576 aa19.53■□□□□ 0.72
PRKDC-207ENST00000536483 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.52■□□□□ 0.72
PRKDC-207ENST00000536483 ANKLE2Q86XL3 938 aa19.51■□□□□ 0.71
PRKDC-207ENST00000536483 THEMISQ8N1K5 641 aaPredicted RBP19.51■□□□□ 0.71
PRKDC-207ENST00000536483 NEURL4Q96JN8 1562 aa19.5■□□□□ 0.71
PRKDC-207ENST00000536483 APLP2Q06481 763 aa19.5■□□□□ 0.71
PRKDC-207ENST00000536483 MYOM3Q5VTT5 1437 aa19.5■□□□□ 0.71
PRKDC-207ENST00000536483 NLRP1Q9C000 1473 aa19.49■□□□□ 0.71
PRKDC-207ENST00000536483 POLR1AO95602 1720 aaPredicted RBP19.49■□□□□ 0.71
PRKDC-207ENST00000536483 SOCS7O14512 581 aa19.49■□□□□ 0.71
PRKDC-207ENST00000536483 UGGT1Q9NYU2 1555 aa19.47■□□□□ 0.71
PRKDC-207ENST00000536483 MAST1Q9Y2H9 1570 aa19.47■□□□□ 0.71
PRKDC-207ENST00000536483 SHANK2Q9UPX8 1470 aa19.47■□□□□ 0.71
PRKDC-207ENST00000536483 ABCC3O15438 1527 aa19.46■□□□□ 0.71
PRKDC-207ENST00000536483 RNF17Q9BXT8 1623 aaKnown RBP19.45■□□□□ 0.7
PRKDC-207ENST00000536483 CPS1P31327 1500 aa19.45■□□□□ 0.7
PRKDC-207ENST00000536483 SCAF1Q9H7N4 1312 aaKnown RBP19.44■□□□□ 0.7
PRKDC-207ENST00000536483 NPHP4O75161 1426 aaPredicted RBP19.43■□□□□ 0.7
PRKDC-207ENST00000536483 TOM1O60784 492 aa19.43■□□□□ 0.7
PRKDC-207ENST00000536483 PIP4K2BP78356 416 aa19.43■□□□□ 0.7
PRKDC-207ENST00000536483 MED14O60244 1454 aa19.41■□□□□ 0.7
PRKDC-207ENST00000536483 ERVK-7P63135 1459 aa19.41■□□□□ 0.7
PRKDC-207ENST00000536483 VWDEQ8N2E2 1590 aa19.4■□□□□ 0.7
PRKDC-207ENST00000536483 EIF2AK4Q9P2K8 1649 aaKnown RBP19.4■□□□□ 0.7
PRKDC-207ENST00000536483 ZC3H13Q5T200 1668 aaKnown RBP19.4■□□□□ 0.7
PRKDC-207ENST00000536483 HSPA1LP34931 641 aa19.4■□□□□ 0.7
PRKDC-207ENST00000536483 DEPDC5O75140 1603 aa19.4■□□□□ 0.7
PRKDC-207ENST00000536483 MROH1Q8NDA8 1641 aa19.4■□□□□ 0.7
PRKDC-207ENST00000536483 DUOX2Q9NRD8 1548 aa19.38■□□□□ 0.69
PRKDC-207ENST00000536483 RRP7BPQ9NSQ0 103 aa19.37■□□□□ 0.69
PRKDC-207ENST00000536483 KIF15Q9NS87 1388 aa19.36■□□□□ 0.69
PRKDC-207ENST00000536483 CEP152O94986 1710 aa19.36■□□□□ 0.69
PRKDC-207ENST00000536483 ABCC5O15440 1437 aa19.35■□□□□ 0.69
PRKDC-207ENST00000536483 FGD6Q6ZV73 1430 aa19.35■□□□□ 0.69
PRKDC-207ENST00000536483 IQGAP1P46940 1657 aa19.35■□□□□ 0.69
PRKDC-207ENST00000536483 CFAP65Q6ZU64 1925 aaKnown RBP19.35■□□□□ 0.69
PRKDC-207ENST00000536483 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.33■□□□□ 0.68
PRKDC-207ENST00000536483 ERBINQ96RT1 1412 aa19.32■□□□□ 0.68
PRKDC-207ENST00000536483 PTPN23Q9H3S7 1636 aa19.31■□□□□ 0.68
PRKDC-207ENST00000536483 LTKP29376 864 aa19.3■□□□□ 0.68
PRKDC-207ENST00000536483 TXNDC2Q86VQ3 553 aa19.3■□□□□ 0.68
PRKDC-207ENST00000536483 DAPK1P53355 1430 aa19.3■□□□□ 0.68
PRKDC-207ENST00000536483 ARHGAP31Q2M1Z3 1444 aa19.3■□□□□ 0.68
PRKDC-207ENST00000536483 UBR1Q8IWV7 1749 aa19.3■□□□□ 0.68
PRKDC-207ENST00000536483 PRDM15P57071 1507 aaPredicted RBP19.3■□□□□ 0.68
PRKDC-207ENST00000536483 ALKQ9UM73 1620 aa19.29■□□□□ 0.68
PRKDC-207ENST00000536483 LRRC7Q96NW7 1537 aa19.29■□□□□ 0.68
PRKDC-207ENST00000536483 STRCP1A6NGW2 1772 aa19.29■□□□□ 0.68
PRKDC-207ENST00000536483 SCAF11Q99590 1463 aaKnown RBP19.28■□□□□ 0.68
PRKDC-207ENST00000536483 CROCC2H7BZ55 1655 aa19.28■□□□□ 0.68
PRKDC-207ENST00000536483 CHIC2Q9UKJ5 165 aa19.28■□□□□ 0.68
PRKDC-207ENST00000536483 SENP3Q9H4L4 574 aaPredicted RBP19.26■□□□□ 0.67
PRKDC-207ENST00000536483 ARHGAP23Q9P227 1491 aa19.26■□□□□ 0.67
PRKDC-207ENST00000536483 MED1Q15648 1581 aaPredicted RBP19.25■□□□□ 0.67
PRKDC-207ENST00000536483 KANK1Q14678 1352 aa19.25■□□□□ 0.67
PRKDC-207ENST00000536483 EID1Q9Y6B2 187 aa19.25■□□□□ 0.67
PRKDC-207ENST00000536483 SLIT1O75093 1534 aa19.25■□□□□ 0.67
PRKDC-207ENST00000536483 ANKRD30AQ9BXX3 1397 aa19.24■□□□□ 0.67
PRKDC-207ENST00000536483 STAG3Q9UJ98 1225 aa19.24■□□□□ 0.67
PRKDC-207ENST00000536483 SYNMO15061 1565 aa19.22■□□□□ 0.67
PRKDC-207ENST00000536483 TMEM2Q9UHN6 1383 aa19.21■□□□□ 0.67
PRKDC-207ENST00000536483 IDI1Q13907 227 aa19.21■□□□□ 0.67
PRKDC-207ENST00000536483 PIK3C2BO00750 1634 aa19.21■□□□□ 0.67
PRKDC-207ENST00000536483 ADGRL2O95490 1459 aa19.19■□□□□ 0.66
PRKDC-207ENST00000536483 LMTK2Q8IWU2 1503 aa19.19■□□□□ 0.66
PRKDC-207ENST00000536483 PHF23Q9BUL5 403 aaPredicted RBP19.18■□□□□ 0.66
PRKDC-207ENST00000536483 EFCAB6Q5THR3 1501 aa19.15■□□□□ 0.66
PRKDC-207ENST00000536483 FAM50AQ14320 339 aaKnown RBP19.15■□□□□ 0.66
PRKDC-207ENST00000536483 SLC26A8Q96RN1 970 aa19.14■□□□□ 0.65
PRKDC-207ENST00000536483 NOS1P29475 1434 aa19.14■□□□□ 0.65
PRKDC-207ENST00000536483 KCNA6P17658 529 aa19.12■□□□□ 0.65
PRKDC-207ENST00000536483 XIRP1Q702N8 1843 aaKnown RBP19.11■□□□□ 0.65
PRKDC-207ENST00000536483 TMEM94Q12767 1356 aa19.11■□□□□ 0.65
PRKDC-207ENST00000536483 SLC52A1Q9NWF4 448 aa19.11■□□□□ 0.65
PRKDC-207ENST00000536483 KDM5AP29375 1690 aaKnown RBP19.11■□□□□ 0.65
PRKDC-207ENST00000536483 RBM33Q96EV2 1170 aaKnown RBP19.1■□□□□ 0.65
PRKDC-207ENST00000536483 ANKRD50Q9ULJ7 1429 aa19.09■□□□□ 0.65
PRKDC-207ENST00000536483 ROCK1Q13464 1354 aa19.09■□□□□ 0.65
PRKDC-207ENST00000536483 TET3O43151 1660 aa19.09■□□□□ 0.65
PRKDC-207ENST00000536483 PROSER2Q86WR7 435 aaPredicted RBP19.08■□□□□ 0.64
PRKDC-207ENST00000536483 BCANQ96GW7 911 aa19.08■□□□□ 0.64
PRKDC-207ENST00000536483 ADGRB3O60242 1522 aa19.08■□□□□ 0.64
PRKDC-207ENST00000536483 FAM135BQ49AJ0 1406 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms