RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.29□□□□□ -0.128e-17■■■■□ 26.2
PRKDC-207ENST00000536483 GRSF1Q12849 480 aaKnown RBP eCLIP13.27□□□□□ -0.297e-12■■■■■ 62.7
PRKDC-207ENST00000536483 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.81□□□□□ -0.682e-11■■■■■ 80.3
PRKDC-207ENST00000536483 SF3B4Q15427 424 aaKnown RBP eCLIP11.3□□□□□ -0.64e-11■■■■■ 49.4
PRKDC-207ENST00000536483 FXR2P51116 673 aaKnown RBP eCLIP13.86□□□□□ -0.191e-10■■■■□ 22.1
PRKDC-207ENST00000536483 FMR1Q06787 632 aaKnown RBP eCLIP16.16■□□□□ 0.181e-9■■■■■ 38.5
PRKDC-207ENST00000536483 SND1Q7KZF4 910 aaKnown RBP eCLIP12.79□□□□□ -0.364e-9■■■□□ 18.4
PRKDC-207ENST00000536483 YBX3P16989 372 aaKnown RBP eCLIP17.09■□□□□ 0.339e-9■■□□□ 11.4
PRKDC-207ENST00000536483 METAP2P50579 478 aaKnown RBP eCLIP14.27□□□□□ -0.133e-7■■■■■ 27.6
PRKDC-207ENST00000536483 RPS3P23396 243 aaKnown RBP eCLIP12.08□□□□□ -0.483e-7■■■□□ 17.4
PRKDC-207ENST00000536483 FXR1P51114 621 aaKnown RBP eCLIP15.27■□□□□ 0.047e-7■■■■□ 20
PRKDC-207ENST00000536483 SUB1P53999 127 aaKnown RBP eCLIP9.31□□□□□ -0.924e-6■■□□□ 11.8
Retrieved 12 of 12 RNA–protein pairs in 4 ms