RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 FAM135AQ9P2D6 1515 aa25.33■■□□□ 1.65
CLSTN3-204ENST00000535313 MYO3AQ8NEV4 1616 aa25.33■■□□□ 1.65
CLSTN3-204ENST00000535313 KDM5DQ9BY66 1539 aa25.32■■□□□ 1.64
CLSTN3-204ENST00000535313 CEP170BQ9Y4F5 1589 aaPredicted RBP25.3■■□□□ 1.64
CLSTN3-204ENST00000535313 ZNF142P52746 1687 aaPredicted RBP25.29■■□□□ 1.64
CLSTN3-204ENST00000535313 PZPP20742 1482 aa25.27■■□□□ 1.64
CLSTN3-204ENST00000535313 FBXO31Q5XUX0 539 aaPredicted RBP25.26■■□□□ 1.63
CLSTN3-204ENST00000535313 NCKAP5LQ9HCH0 1330 aa25.26■■□□□ 1.63
CLSTN3-204ENST00000535313 TNRQ92752 1358 aa25.26■■□□□ 1.63
CLSTN3-204ENST00000535313 PKD2Q13563 968 aa25.25■■□□□ 1.63
CLSTN3-204ENST00000535313 A2ML1A8K2U0 1454 aa25.25■■□□□ 1.63
CLSTN3-204ENST00000535313 PLA2R1Q13018 1463 aa25.25■■□□□ 1.63
CLSTN3-204ENST00000535313 PTPN23Q9H3S7 1636 aa25.24■■□□□ 1.63
CLSTN3-204ENST00000535313 RNF17Q9BXT8 1623 aaKnown RBP25.22■■□□□ 1.63
CLSTN3-204ENST00000535313 EIF2AK4Q9P2K8 1649 aaKnown RBP25.22■■□□□ 1.63
CLSTN3-204ENST00000535313 ABCC5O15440 1437 aa25.21■■□□□ 1.63
CLSTN3-204ENST00000535313 FGD6Q6ZV73 1430 aa25.21■■□□□ 1.63
CLSTN3-204ENST00000535313 DUOX2Q9NRD8 1548 aa25.21■■□□□ 1.63
CLSTN3-204ENST00000535313 SHANK2Q9UPX8 1470 aa25.21■■□□□ 1.63
CLSTN3-204ENST00000535313 KIF15Q9NS87 1388 aa25.19■■□□□ 1.62
CLSTN3-204ENST00000535313 TCOF1Q13428 1488 aaKnown RBP25.19■■□□□ 1.62
CLSTN3-204ENST00000535313 DNMT1P26358 1616 aaKnown RBP25.18■■□□□ 1.62
CLSTN3-204ENST00000535313 ABCC3O15438 1527 aa25.17■■□□□ 1.62
CLSTN3-204ENST00000535313 RRP7BPQ9NSQ0 103 aa25.17■■□□□ 1.62
CLSTN3-204ENST00000535313 DAPK1P53355 1430 aa25.17■■□□□ 1.62
CLSTN3-204ENST00000535313 CROCC2H7BZ55 1655 aa25.16■■□□□ 1.62
CLSTN3-204ENST00000535313 ZC3H13Q5T200 1668 aaKnown RBP25.16■■□□□ 1.62
CLSTN3-204ENST00000535313 LTBP4Q8N2S1 1624 aa25.15■■□□□ 1.62
CLSTN3-204ENST00000535313 NLRP1Q9C000 1473 aa25.14■■□□□ 1.61
CLSTN3-204ENST00000535313 ERBINQ96RT1 1412 aa25.13■■□□□ 1.61
CLSTN3-204ENST00000535313 THEMISQ8N1K5 641 aaPredicted RBP25.12■■□□□ 1.61
CLSTN3-204ENST00000535313 MROH1Q8NDA8 1641 aa25.12■■□□□ 1.61
CLSTN3-204ENST00000535313 ANKRD30AQ9BXX3 1397 aa25.1■■□□□ 1.61
CLSTN3-204ENST00000535313 CHIC2Q9UKJ5 165 aa25.1■■□□□ 1.61
CLSTN3-204ENST00000535313 ZNF335Q9H4Z2 1342 aaPredicted RBP25.1■■□□□ 1.61
CLSTN3-204ENST00000535313 ANKLE2Q86XL3 938 aa25.08■■□□□ 1.61
CLSTN3-204ENST00000535313 IQSEC2Q5JU85 1478 aa25.08■■□□□ 1.6
CLSTN3-204ENST00000535313 SPATA31D1Q6ZQQ2 1576 aa25.07■■□□□ 1.6
CLSTN3-204ENST00000535313 UGGT1Q9NYU2 1555 aa25.07■■□□□ 1.6
CLSTN3-204ENST00000535313 FAM50AQ14320 339 aaKnown RBP25.07■■□□□ 1.6
CLSTN3-204ENST00000535313 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.06■■□□□ 1.6
CLSTN3-204ENST00000535313 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.06■■□□□ 1.6
CLSTN3-204ENST00000535313 ERVK-7P63135 1459 aa25.06■■□□□ 1.6
CLSTN3-204ENST00000535313 CEP152O94986 1710 aa25.06■■□□□ 1.6
CLSTN3-204ENST00000535313 PRDM15P57071 1507 aaPredicted RBP25.05■■□□□ 1.6
CLSTN3-204ENST00000535313 KANK1Q14678 1352 aa25.04■■□□□ 1.6
CLSTN3-204ENST00000535313 POLR1AO95602 1720 aaPredicted RBP25.03■■□□□ 1.6
CLSTN3-204ENST00000535313 ARHGAP31Q2M1Z3 1444 aa25.01■■□□□ 1.59
CLSTN3-204ENST00000535313 NEURL4Q96JN8 1562 aa25■■□□□ 1.59
CLSTN3-204ENST00000535313 CFAP65Q6ZU64 1925 aaKnown RBP24.99■■□□□ 1.59
CLSTN3-204ENST00000535313 DEPDC5O75140 1603 aa24.98■■□□□ 1.59
CLSTN3-204ENST00000535313 ADGRL2O95490 1459 aa24.97■■□□□ 1.59
CLSTN3-204ENST00000535313 NPHP4O75161 1426 aaPredicted RBP24.95■■□□□ 1.59
CLSTN3-204ENST00000535313 MED14O60244 1454 aa24.94■■□□□ 1.58
CLSTN3-204ENST00000535313 UBAP1LF5GYI3 381 aa24.92■■□□□ 1.58
CLSTN3-204ENST00000535313 LMTK2Q8IWU2 1503 aa24.91■■□□□ 1.58
CLSTN3-204ENST00000535313 ANKRD50Q9ULJ7 1429 aa24.9■■□□□ 1.58
CLSTN3-204ENST00000535313 CPS1P31327 1500 aa24.9■■□□□ 1.58
CLSTN3-204ENST00000535313 VWDEQ8N2E2 1590 aa24.89■■□□□ 1.58
CLSTN3-204ENST00000535313 UBR1Q8IWV7 1749 aa24.89■■□□□ 1.57
CLSTN3-204ENST00000535313 IQGAP1P46940 1657 aa24.88■■□□□ 1.57
CLSTN3-204ENST00000535313 STAG3Q9UJ98 1225 aa24.87■■□□□ 1.57
CLSTN3-204ENST00000535313 SCAF11Q99590 1463 aaKnown RBP24.84■■□□□ 1.57
CLSTN3-204ENST00000535313 TXNDC2Q86VQ3 553 aa24.84■■□□□ 1.57
CLSTN3-204ENST00000535313 EID1Q9Y6B2 187 aa24.84■■□□□ 1.57
CLSTN3-204ENST00000535313 EFCAB6Q5THR3 1501 aa24.83■■□□□ 1.57
CLSTN3-204ENST00000535313 PPARGC1BQ86YN6 1023 aaKnown RBP24.83■■□□□ 1.57
CLSTN3-204ENST00000535313 SLIT1O75093 1534 aa24.82■■□□□ 1.56
CLSTN3-204ENST00000535313 ARHGAP23Q9P227 1491 aa24.82■■□□□ 1.56
CLSTN3-204ENST00000535313 LTKP29376 864 aa24.81■■□□□ 1.56
CLSTN3-204ENST00000535313 IDI1Q13907 227 aa24.81■■□□□ 1.56
CLSTN3-204ENST00000535313 PIK3C2BO00750 1634 aa24.81■■□□□ 1.56
CLSTN3-204ENST00000535313 ROCK1Q13464 1354 aa24.8■■□□□ 1.56
CLSTN3-204ENST00000535313 TOM1O60784 492 aa24.79■■□□□ 1.56
CLSTN3-204ENST00000535313 TMEM2Q9UHN6 1383 aa24.79■■□□□ 1.56
CLSTN3-204ENST00000535313 NOS1P29475 1434 aa24.78■■□□□ 1.56
CLSTN3-204ENST00000535313 ITGAEP38570 1179 aa24.77■■□□□ 1.56
CLSTN3-204ENST00000535313 SLC52A1Q9NWF4 448 aa24.77■■□□□ 1.56
CLSTN3-204ENST00000535313 RPRD2Q5VT52 1461 aaKnown RBP24.77■■□□□ 1.56
CLSTN3-204ENST00000535313 SYNMO15061 1565 aa24.76■■□□□ 1.55
CLSTN3-204ENST00000535313 KDM5AP29375 1690 aaKnown RBP24.75■■□□□ 1.55
CLSTN3-204ENST00000535313 SCAF1Q9H7N4 1312 aaKnown RBP24.75■■□□□ 1.55
CLSTN3-204ENST00000535313 DISP3Q9P2K9 1392 aa24.73■■□□□ 1.55
CLSTN3-204ENST00000535313 PIP4K2BP78356 416 aa24.73■■□□□ 1.55
CLSTN3-204ENST00000535313 TET3O43151 1660 aa24.72■■□□□ 1.55
CLSTN3-204ENST00000535313 UNC13BO14795 1591 aa24.71■■□□□ 1.55
CLSTN3-204ENST00000535313 ADGRB3O60242 1522 aa24.7■■□□□ 1.54
CLSTN3-204ENST00000535313 LRRC7Q96NW7 1537 aa24.69■■□□□ 1.54
CLSTN3-204ENST00000535313 STRCP1A6NGW2 1772 aa24.68■■□□□ 1.54
CLSTN3-204ENST00000535313 GCC2Q8IWJ2 1684 aa24.67■■□□□ 1.54
CLSTN3-204ENST00000535313 NUP155O75694 1391 aa24.66■■□□□ 1.54
CLSTN3-204ENST00000535313 BCANQ96GW7 911 aa24.63■■□□□ 1.53
CLSTN3-204ENST00000535313 IQGAP3Q86VI3 1631 aa24.62■■□□□ 1.53
CLSTN3-204ENST00000535313 HSPA1LP34931 641 aa24.62■■□□□ 1.53
CLSTN3-204ENST00000535313 HDGFP51858 240 aaKnown RBP24.62■■□□□ 1.53
CLSTN3-204ENST00000535313 SLC26A8Q96RN1 970 aa24.61■■□□□ 1.53
CLSTN3-204ENST00000535313 CHGAP10645 457 aaKnown RBP24.6■■□□□ 1.53
CLSTN3-204ENST00000535313 RRBP1Q9P2E9 1410 aaKnown RBP24.6■■□□□ 1.53
CLSTN3-204ENST00000535313 E9PCH4 1651 aa24.59■■□□□ 1.53
CLSTN3-204ENST00000535313 PPP1R15AO75807 674 aaPredicted RBP24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms