RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 NCOA1Q15788 1441 aa24.01■■□□□ 1.43
CPSF1-211ENST00000533492 FAM135AQ9P2D6 1515 aa24.01■■□□□ 1.43
CPSF1-211ENST00000533492 FBXO31Q5XUX0 539 aaPredicted RBP24.01■■□□□ 1.43
CPSF1-211ENST00000533492 CAMSAP1Q5T5Y3 1602 aa24.01■■□□□ 1.43
CPSF1-211ENST00000533492 MYO3AQ8NEV4 1616 aa23.99■■□□□ 1.43
CPSF1-211ENST00000533492 FGD6Q6ZV73 1430 aa23.99■■□□□ 1.43
CPSF1-211ENST00000533492 ABCC5O15440 1437 aa23.98■■□□□ 1.43
CPSF1-211ENST00000533492 NCKAP5LQ9HCH0 1330 aa23.97■■□□□ 1.43
CPSF1-211ENST00000533492 RRP7BPQ9NSQ0 103 aa23.97■■□□□ 1.43
CPSF1-211ENST00000533492 CEP170BQ9Y4F5 1589 aaPredicted RBP23.97■■□□□ 1.43
CPSF1-211ENST00000533492 PZPP20742 1482 aa23.96■■□□□ 1.43
CPSF1-211ENST00000533492 TNRQ92752 1358 aa23.96■■□□□ 1.43
CPSF1-211ENST00000533492 ZNF142P52746 1687 aaPredicted RBP23.95■■□□□ 1.43
CPSF1-211ENST00000533492 DUOX2Q9NRD8 1548 aa23.95■■□□□ 1.43
CPSF1-211ENST00000533492 PKD2Q13563 968 aa23.95■■□□□ 1.42
CPSF1-211ENST00000533492 KIF15Q9NS87 1388 aa23.94■■□□□ 1.42
CPSF1-211ENST00000533492 EIF2AK4Q9P2K8 1649 aaKnown RBP23.94■■□□□ 1.42
CPSF1-211ENST00000533492 A2ML1A8K2U0 1454 aa23.94■■□□□ 1.42
CPSF1-211ENST00000533492 TCOF1Q13428 1488 aaKnown RBP23.94■■□□□ 1.42
CPSF1-211ENST00000533492 SHANK2Q9UPX8 1470 aa23.94■■□□□ 1.42
CPSF1-211ENST00000533492 DAPK1P53355 1430 aa23.93■■□□□ 1.42
CPSF1-211ENST00000533492 RNF17Q9BXT8 1623 aaKnown RBP23.93■■□□□ 1.42
CPSF1-211ENST00000533492 CHIC2Q9UKJ5 165 aa23.92■■□□□ 1.42
CPSF1-211ENST00000533492 PLA2R1Q13018 1463 aa23.92■■□□□ 1.42
CPSF1-211ENST00000533492 CROCC2H7BZ55 1655 aa23.91■■□□□ 1.42
CPSF1-211ENST00000533492 FAM50AQ14320 339 aaKnown RBP23.9■■□□□ 1.42
CPSF1-211ENST00000533492 DNMT1P26358 1616 aaKnown RBP23.9■■□□□ 1.42
CPSF1-211ENST00000533492 ABCC3O15438 1527 aa23.89■■□□□ 1.41
CPSF1-211ENST00000533492 ANKRD30AQ9BXX3 1397 aa23.88■■□□□ 1.41
CPSF1-211ENST00000533492 ZC3H13Q5T200 1668 aaKnown RBP23.87■■□□□ 1.41
CPSF1-211ENST00000533492 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.87■■□□□ 1.41
CPSF1-211ENST00000533492 ERBINQ96RT1 1412 aa23.86■■□□□ 1.41
CPSF1-211ENST00000533492 THEMISQ8N1K5 641 aaPredicted RBP23.86■■□□□ 1.41
CPSF1-211ENST00000533492 NLRP1Q9C000 1473 aa23.84■■□□□ 1.41
CPSF1-211ENST00000533492 MROH1Q8NDA8 1641 aa23.84■■□□□ 1.41
CPSF1-211ENST00000533492 KANK1Q14678 1352 aa23.81■■□□□ 1.4
CPSF1-211ENST00000533492 ANKLE2Q86XL3 938 aa23.81■■□□□ 1.4
CPSF1-211ENST00000533492 CEP152O94986 1710 aa23.81■■□□□ 1.4
CPSF1-211ENST00000533492 CFAP65Q6ZU64 1925 aaKnown RBP23.8■■□□□ 1.4
CPSF1-211ENST00000533492 LTBP4Q8N2S1 1624 aa23.8■■□□□ 1.4
CPSF1-211ENST00000533492 ZNF335Q9H4Z2 1342 aaPredicted RBP23.8■■□□□ 1.4
CPSF1-211ENST00000533492 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.79■■□□□ 1.4
CPSF1-211ENST00000533492 UGGT1Q9NYU2 1555 aa23.79■■□□□ 1.4
CPSF1-211ENST00000533492 ERVK-7P63135 1459 aa23.78■■□□□ 1.4
CPSF1-211ENST00000533492 SPATA31D1Q6ZQQ2 1576 aa23.78■■□□□ 1.4
CPSF1-211ENST00000533492 PRDM15P57071 1507 aaPredicted RBP23.77■■□□□ 1.4
CPSF1-211ENST00000533492 PPARGC1BQ86YN6 1023 aaKnown RBP23.74■■□□□ 1.39
CPSF1-211ENST00000533492 ARHGAP31Q2M1Z3 1444 aa23.74■■□□□ 1.39
CPSF1-211ENST00000533492 ADGRL2O95490 1459 aa23.74■■□□□ 1.39
CPSF1-211ENST00000533492 POLR1AO95602 1720 aaPredicted RBP23.73■■□□□ 1.39
CPSF1-211ENST00000533492 DEPDC5O75140 1603 aa23.72■■□□□ 1.39
CPSF1-211ENST00000533492 IQSEC2Q5JU85 1478 aa23.71■■□□□ 1.39
CPSF1-211ENST00000533492 ANKRD50Q9ULJ7 1429 aa23.68■■□□□ 1.38
CPSF1-211ENST00000533492 NEURL4Q96JN8 1562 aa23.68■■□□□ 1.38
CPSF1-211ENST00000533492 NPHP4O75161 1426 aaPredicted RBP23.67■■□□□ 1.38
CPSF1-211ENST00000533492 STAG3Q9UJ98 1225 aa23.66■■□□□ 1.38
CPSF1-211ENST00000533492 ITGAEP38570 1179 aa23.65■■□□□ 1.38
CPSF1-211ENST00000533492 LMTK2Q8IWU2 1503 aa23.64■■□□□ 1.38
CPSF1-211ENST00000533492 MED14O60244 1454 aa23.64■■□□□ 1.38
CPSF1-211ENST00000533492 UBAP1LF5GYI3 381 aa23.63■■□□□ 1.37
CPSF1-211ENST00000533492 VWDEQ8N2E2 1590 aa23.63■■□□□ 1.37
CPSF1-211ENST00000533492 UBR1Q8IWV7 1749 aa23.62■■□□□ 1.37
CPSF1-211ENST00000533492 TXNDC2Q86VQ3 553 aa23.61■■□□□ 1.37
CPSF1-211ENST00000533492 EID1Q9Y6B2 187 aa23.61■■□□□ 1.37
CPSF1-211ENST00000533492 IDI1Q13907 227 aa23.6■■□□□ 1.37
CPSF1-211ENST00000533492 ROCK1Q13464 1354 aa23.59■■□□□ 1.37
CPSF1-211ENST00000533492 IQGAP1P46940 1657 aa23.58■■□□□ 1.37
CPSF1-211ENST00000533492 CPS1P31327 1500 aa23.58■■□□□ 1.36
CPSF1-211ENST00000533492 LTKP29376 864 aa23.57■■□□□ 1.36
CPSF1-211ENST00000533492 EFCAB6Q5THR3 1501 aa23.57■■□□□ 1.36
CPSF1-211ENST00000533492 SCAF11Q99590 1463 aaKnown RBP23.56■■□□□ 1.36
CPSF1-211ENST00000533492 PIK3C2BO00750 1634 aa23.55■■□□□ 1.36
CPSF1-211ENST00000533492 SLC52A1Q9NWF4 448 aa23.55■■□□□ 1.36
CPSF1-211ENST00000533492 SLIT1O75093 1534 aa23.54■■□□□ 1.36
CPSF1-211ENST00000533492 NOS1P29475 1434 aa23.54■■□□□ 1.36
CPSF1-211ENST00000533492 ARHGAP23Q9P227 1491 aa23.54■■□□□ 1.36
CPSF1-211ENST00000533492 TMEM2Q9UHN6 1383 aa23.53■■□□□ 1.36
CPSF1-211ENST00000533492 RPRD2Q5VT52 1461 aaKnown RBP23.52■■□□□ 1.36
CPSF1-211ENST00000533492 TOM1O60784 492 aa23.51■■□□□ 1.35
CPSF1-211ENST00000533492 SYNMO15061 1565 aa23.51■■□□□ 1.35
CPSF1-211ENST00000533492 TET3O43151 1660 aa23.49■■□□□ 1.35
CPSF1-211ENST00000533492 SCAF1Q9H7N4 1312 aaKnown RBP23.49■■□□□ 1.35
CPSF1-211ENST00000533492 UNC13BO14795 1591 aa23.48■■□□□ 1.35
CPSF1-211ENST00000533492 KDM5AP29375 1690 aaKnown RBP23.48■■□□□ 1.35
CPSF1-211ENST00000533492 NUP155O75694 1391 aa23.47■■□□□ 1.35
CPSF1-211ENST00000533492 PIP4K2BP78356 416 aa23.46■■□□□ 1.35
CPSF1-211ENST00000533492 GCC2Q8IWJ2 1684 aa23.44■■□□□ 1.34
CPSF1-211ENST00000533492 BCANQ96GW7 911 aa23.44■■□□□ 1.34
CPSF1-211ENST00000533492 ADGRB3O60242 1522 aa23.43■■□□□ 1.34
CPSF1-211ENST00000533492 CHGAP10645 457 aaKnown RBP23.43■■□□□ 1.34
CPSF1-211ENST00000533492 RRBP1Q9P2E9 1410 aaKnown RBP23.42■■□□□ 1.34
CPSF1-211ENST00000533492 HDGFP51858 240 aaKnown RBP23.42■■□□□ 1.34
CPSF1-211ENST00000533492 STRCP1A6NGW2 1772 aa23.41■■□□□ 1.34
CPSF1-211ENST00000533492 IQGAP3Q86VI3 1631 aa23.41■■□□□ 1.34
CPSF1-211ENST00000533492 LRRC7Q96NW7 1537 aa23.4■■□□□ 1.34
CPSF1-211ENST00000533492 SLC26A8Q96RN1 970 aa23.39■■□□□ 1.33
CPSF1-211ENST00000533492 DISP3Q9P2K9 1392 aa23.39■■□□□ 1.33
CPSF1-211ENST00000533492 E9PCH4 1651 aa23.38■■□□□ 1.33
CPSF1-211ENST00000533492 PPP1R15AO75807 674 aaPredicted RBP23.38■■□□□ 1.33
CPSF1-211ENST00000533492 SENP3Q9H4L4 574 aaPredicted RBP23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms