RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 MYOM3Q5VTT5 1437 aa23.09■■□□□ 1.29
VPS28-215ENST00000531924 MIA2Q96PC5 1412 aa23.09■■□□□ 1.29
VPS28-215ENST00000531924 CEP170BQ9Y4F5 1589 aaPredicted RBP23.09■■□□□ 1.29
VPS28-215ENST00000531924 KDM5DQ9BY66 1539 aa23.08■■□□□ 1.28
VPS28-215ENST00000531924 TNRQ92752 1358 aa23.07■■□□□ 1.28
VPS28-215ENST00000531924 FBXO31Q5XUX0 539 aaPredicted RBP23.07■■□□□ 1.28
VPS28-215ENST00000531924 PLA2R1Q13018 1463 aa23.06■■□□□ 1.28
VPS28-215ENST00000531924 FAM135AQ9P2D6 1515 aa23.06■■□□□ 1.28
VPS28-215ENST00000531924 A2ML1A8K2U0 1454 aa23.05■■□□□ 1.28
VPS28-215ENST00000531924 ZNF142P52746 1687 aaPredicted RBP23.04■■□□□ 1.28
VPS28-215ENST00000531924 PZPP20742 1482 aa23.04■■□□□ 1.28
VPS28-215ENST00000531924 MAST1Q9Y2H9 1570 aa23.01■■□□□ 1.27
VPS28-215ENST00000531924 TCOF1Q13428 1488 aaKnown RBP22.99■■□□□ 1.27
VPS28-215ENST00000531924 LTBP4Q8N2S1 1624 aa22.99■■□□□ 1.27
VPS28-215ENST00000531924 ZNF335Q9H4Z2 1342 aaPredicted RBP22.99■■□□□ 1.27
VPS28-215ENST00000531924 THEMISQ8N1K5 641 aaPredicted RBP22.98■■□□□ 1.27
VPS28-215ENST00000531924 DNMT1P26358 1616 aaKnown RBP22.96■■□□□ 1.27
VPS28-215ENST00000531924 IQSEC2Q5JU85 1478 aa22.95■■□□□ 1.26
VPS28-215ENST00000531924 ANKLE2Q86XL3 938 aa22.95■■□□□ 1.26
VPS28-215ENST00000531924 RRP7BPQ9NSQ0 103 aa22.95■■□□□ 1.26
VPS28-215ENST00000531924 DUOX2Q9NRD8 1548 aa22.93■■□□□ 1.26
VPS28-215ENST00000531924 NLRP1Q9C000 1473 aa22.93■■□□□ 1.26
VPS28-215ENST00000531924 KIF15Q9NS87 1388 aa22.93■■□□□ 1.26
VPS28-215ENST00000531924 RNF17Q9BXT8 1623 aaKnown RBP22.92■■□□□ 1.26
VPS28-215ENST00000531924 EIF2AK4Q9P2K8 1649 aaKnown RBP22.92■■□□□ 1.26
VPS28-215ENST00000531924 ABCC3O15438 1527 aa22.92■■□□□ 1.26
VPS28-215ENST00000531924 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.91■■□□□ 1.263e-6■■□□□ 12.6
VPS28-215ENST00000531924 ABCC5O15440 1437 aa22.91■■□□□ 1.26
VPS28-215ENST00000531924 PTPN23Q9H3S7 1636 aa22.9■■□□□ 1.26
VPS28-215ENST00000531924 UBAP1LF5GYI3 381 aa22.9■■□□□ 1.26
VPS28-215ENST00000531924 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.9■■□□□ 1.269e-9■■■□□ 15.1
VPS28-215ENST00000531924 FGD6Q6ZV73 1430 aa22.9■■□□□ 1.26
VPS28-215ENST00000531924 SHANK2Q9UPX8 1470 aa22.89■■□□□ 1.25
VPS28-215ENST00000531924 UGGT1Q9NYU2 1555 aa22.89■■□□□ 1.25
VPS28-215ENST00000531924 ZC3H13Q5T200 1668 aaKnown RBP22.88■■□□□ 1.25
VPS28-215ENST00000531924 CHIC2Q9UKJ5 165 aa22.87■■□□□ 1.25
VPS28-215ENST00000531924 DAPK1P53355 1430 aa22.87■■□□□ 1.25
VPS28-215ENST00000531924 ERBINQ96RT1 1412 aa22.86■■□□□ 1.25
VPS28-215ENST00000531924 KANK1Q14678 1352 aa22.86■■□□□ 1.25
VPS28-215ENST00000531924 ANKRD30AQ9BXX3 1397 aa22.85■■□□□ 1.25
VPS28-215ENST00000531924 ERVK-7P63135 1459 aa22.84■■□□□ 1.25
VPS28-215ENST00000531924 FAM50AQ14320 339 aaKnown RBP22.83■■□□□ 1.25
VPS28-215ENST00000531924 SPATA31D1Q6ZQQ2 1576 aa22.82■■□□□ 1.24
VPS28-215ENST00000531924 POLR1AO95602 1720 aaPredicted RBP22.82■■□□□ 1.24
VPS28-215ENST00000531924 DISP3Q9P2K9 1392 aa22.81■■□□□ 1.24
VPS28-215ENST00000531924 MROH1Q8NDA8 1641 aa22.81■■□□□ 1.24
VPS28-215ENST00000531924 NPHP4O75161 1426 aaPredicted RBP22.81■■□□□ 1.24
VPS28-215ENST00000531924 CROCC2H7BZ55 1655 aa22.81■■□□□ 1.24
VPS28-215ENST00000531924 NEURL4Q96JN8 1562 aa22.8■■□□□ 1.24
VPS28-215ENST00000531924 SCAF1Q9H7N4 1312 aaKnown RBP22.79■■□□□ 1.24
VPS28-215ENST00000531924 CEP152O94986 1710 aa22.78■■□□□ 1.24
VPS28-215ENST00000531924 CPS1P31327 1500 aa22.77■■□□□ 1.24
VPS28-215ENST00000531924 STAG3Q9UJ98 1225 aa22.77■■□□□ 1.24
VPS28-215ENST00000531924 PRDM15P57071 1507 aaPredicted RBP22.77■■□□□ 1.24
VPS28-215ENST00000531924 ARHGAP31Q2M1Z3 1444 aa22.75■■□□□ 1.23
VPS28-215ENST00000531924 MED14O60244 1454 aa22.75■■□□□ 1.23
VPS28-215ENST00000531924 TOM1O60784 492 aa22.75■■□□□ 1.23
VPS28-215ENST00000531924 DEPDC5O75140 1603 aa22.75■■□□□ 1.23
VPS28-215ENST00000531924 PIP4K2BP78356 416 aa22.73■■□□□ 1.23
VPS28-215ENST00000531924 EID1Q9Y6B2 187 aa22.73■■□□□ 1.23
VPS28-215ENST00000531924 TXNDC2Q86VQ3 553 aa22.72■■□□□ 1.23
VPS28-215ENST00000531924 CFAP65Q6ZU64 1925 aaKnown RBP22.7■■□□□ 1.23
VPS28-215ENST00000531924 IQGAP1P46940 1657 aa22.69■■□□□ 1.22
VPS28-215ENST00000531924 VWDEQ8N2E2 1590 aa22.68■■□□□ 1.22
VPS28-215ENST00000531924 SCAF11Q99590 1463 aaKnown RBP22.68■■□□□ 1.22
VPS28-215ENST00000531924 UBR1Q8IWV7 1749 aa22.66■■□□□ 1.22
VPS28-215ENST00000531924 ADGRL2O95490 1459 aa22.66■■□□□ 1.22
VPS28-215ENST00000531924 LTKP29376 864 aa22.65■■□□□ 1.22
VPS28-215ENST00000531924 ANKRD50Q9ULJ7 1429 aa22.65■■□□□ 1.22
VPS28-215ENST00000531924 LMTK2Q8IWU2 1503 aa22.64■■□□□ 1.21
VPS28-215ENST00000531924 IDI1Q13907 227 aa22.63■■□□□ 1.21
VPS28-215ENST00000531924 TMEM2Q9UHN6 1383 aa22.62■■□□□ 1.21
VPS28-215ENST00000531924 SLIT1O75093 1534 aa22.62■■□□□ 1.21
VPS28-215ENST00000531924 ARHGAP23Q9P227 1491 aa22.61■■□□□ 1.21
VPS28-215ENST00000531924 HSPA1LP34931 641 aa22.61■■□□□ 1.21
VPS28-215ENST00000531924 SLC52A1Q9NWF4 448 aa22.6■■□□□ 1.21
VPS28-215ENST00000531924 PIK3C2BO00750 1634 aa22.6■■□□□ 1.21
VPS28-215ENST00000531924 EFCAB6Q5THR3 1501 aa22.58■■□□□ 1.21
VPS28-215ENST00000531924 ILDR2Q71H61 639 aa22.58■■□□□ 1.21
VPS28-215ENST00000531924 BCANQ96GW7 911 aa22.58■■□□□ 1.21
VPS28-215ENST00000531924 ITGAEP38570 1179 aa22.57■■□□□ 1.2
VPS28-215ENST00000531924 LRRC7Q96NW7 1537 aa22.57■■□□□ 1.2
VPS28-215ENST00000531924 PPARGC1BQ86YN6 1023 aaKnown RBP22.56■■□□□ 1.2
VPS28-215ENST00000531924 NOS1P29475 1434 aa22.55■■□□□ 1.2
VPS28-215ENST00000531924 SYNMO15061 1565 aa22.53■■□□□ 1.2
VPS28-215ENST00000531924 RPRD2Q5VT52 1461 aaKnown RBP22.53■■□□□ 1.2
VPS28-215ENST00000531924 SENP3Q9H4L4 574 aaPredicted RBP22.52■■□□□ 1.2
VPS28-215ENST00000531924 ROCK1Q13464 1354 aa22.51■■□□□ 1.19
VPS28-215ENST00000531924 HDGFP51858 240 aaKnown RBP22.51■■□□□ 1.19
VPS28-215ENST00000531924 SLC26A8Q96RN1 970 aa22.51■■□□□ 1.19
VPS28-215ENST00000531924 KDM5AP29375 1690 aaKnown RBP22.5■■□□□ 1.19
VPS28-215ENST00000531924 PPP1R15AO75807 674 aaPredicted RBP22.5■■□□□ 1.19
VPS28-215ENST00000531924 STRCP1A6NGW2 1772 aa22.49■■□□□ 1.19
VPS28-215ENST00000531924 ADGRB3O60242 1522 aa22.49■■□□□ 1.19
VPS28-215ENST00000531924 SOCS7O14512 581 aa22.49■■□□□ 1.19
VPS28-215ENST00000531924 CHGAP10645 457 aaKnown RBP22.49■■□□□ 1.19
VPS28-215ENST00000531924 KCNA6P17658 529 aa22.46■■□□□ 1.19
VPS28-215ENST00000531924 TET3O43151 1660 aa22.46■■□□□ 1.19
VPS28-215ENST00000531924 PROSER2Q86WR7 435 aaPredicted RBP22.45■■□□□ 1.18
VPS28-215ENST00000531924 NUP155O75694 1391 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms