RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 POLR1AO95602 1720 aaPredicted RBP15.9■□□□□ 0.14
VPS28-204ENST00000526054 PZPP20742 1482 aa15.9■□□□□ 0.14
VPS28-204ENST00000526054 DNMT1P26358 1616 aaKnown RBP15.9■□□□□ 0.14
VPS28-204ENST00000526054 MAP3K1Q13233 1512 aa15.89■□□□□ 0.13
VPS28-204ENST00000526054 MAST1Q9Y2H9 1570 aa15.89■□□□□ 0.13
VPS28-204ENST00000526054 KIF3BO15066 747 aa15.89■□□□□ 0.13
VPS28-204ENST00000526054 NCKAP5LQ9HCH0 1330 aa15.89■□□□□ 0.13
VPS28-204ENST00000526054 RNF17Q9BXT8 1623 aaKnown RBP15.87■□□□□ 0.13
VPS28-204ENST00000526054 ZC3H13Q5T200 1668 aaKnown RBP15.87■□□□□ 0.13
VPS28-204ENST00000526054 PKD2Q13563 968 aa15.87■□□□□ 0.13
VPS28-204ENST00000526054 TNRQ92752 1358 aa15.87■□□□□ 0.13
VPS28-204ENST00000526054 EIF2AK4Q9P2K8 1649 aaKnown RBP15.86■□□□□ 0.13
VPS28-204ENST00000526054 APLP2Q06481 763 aa15.86■□□□□ 0.13
VPS28-204ENST00000526054 TSPY4P0CV99 314 aa15.85■□□□□ 0.13
VPS28-204ENST00000526054 TSPY10P0CW01 314 aa15.85■□□□□ 0.13
VPS28-204ENST00000526054 ZNF335Q9H4Z2 1342 aaPredicted RBP15.85■□□□□ 0.13
VPS28-204ENST00000526054 MYOM3Q5VTT5 1437 aa15.85■□□□□ 0.13
VPS28-204ENST00000526054 WASHC2CQ9Y4E1 1318 aa15.84■□□□□ 0.13
VPS28-204ENST00000526054 MIA2Q96PC5 1412 aa15.83■□□□□ 0.12
VPS28-204ENST00000526054 NEURL4Q96JN8 1562 aa15.83■□□□□ 0.12
VPS28-204ENST00000526054 CROCC2H7BZ55 1655 aa15.83■□□□□ 0.12
VPS28-204ENST00000526054 FBXO31Q5XUX0 539 aaPredicted RBP15.82■□□□□ 0.12
VPS28-204ENST00000526054 ABCC3O15438 1527 aa15.82■□□□□ 0.12
VPS28-204ENST00000526054 KANK4Q5T7N3 995 aaPredicted RBP15.81■□□□□ 0.12
VPS28-204ENST00000526054 NLRP1Q9C000 1473 aa15.81■□□□□ 0.12
VPS28-204ENST00000526054 CEP152O94986 1710 aa15.8■□□□□ 0.12
VPS28-204ENST00000526054 MROH1Q8NDA8 1641 aa15.8■□□□□ 0.12
VPS28-204ENST00000526054 SPATA31D1Q6ZQQ2 1576 aa15.8■□□□□ 0.12
VPS28-204ENST00000526054 UGGT1Q9NYU2 1555 aa15.79■□□□□ 0.12
VPS28-204ENST00000526054 DUOX2Q9NRD8 1548 aa15.78■□□□□ 0.12
VPS28-204ENST00000526054 SHANK2Q9UPX8 1470 aa15.78■□□□□ 0.12
VPS28-204ENST00000526054 DISP3Q9P2K9 1392 aa15.77■□□□□ 0.12
VPS28-204ENST00000526054 DEPDC5O75140 1603 aa15.77■□□□□ 0.12
VPS28-204ENST00000526054 PTPN23Q9H3S7 1636 aa15.77■□□□□ 0.12
VPS28-204ENST00000526054 CPS1P31327 1500 aa15.76■□□□□ 0.11
VPS28-204ENST00000526054 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.75■□□□□ 0.113e-6■■□□□ 12.6
VPS28-204ENST00000526054 PRDM15P57071 1507 aaPredicted RBP15.75■□□□□ 0.11
VPS28-204ENST00000526054 ERVK-7P63135 1459 aa15.75■□□□□ 0.11
VPS28-204ENST00000526054 IQGAP1P46940 1657 aa15.74■□□□□ 0.11
VPS28-204ENST00000526054 UBAP1LF5GYI3 381 aa15.74■□□□□ 0.11
VPS28-204ENST00000526054 ERBINQ96RT1 1412 aa15.73■□□□□ 0.11
VPS28-204ENST00000526054 KIF15Q9NS87 1388 aa15.73■□□□□ 0.11
VPS28-204ENST00000526054 VWDEQ8N2E2 1590 aa15.72■□□□□ 0.11
VPS28-204ENST00000526054 NPHP4O75161 1426 aaPredicted RBP15.72■□□□□ 0.11
VPS28-204ENST00000526054 ANKLE2Q86XL3 938 aa15.72■□□□□ 0.11
VPS28-204ENST00000526054 THEMISQ8N1K5 641 aaPredicted RBP15.72■□□□□ 0.11
VPS28-204ENST00000526054 MED14O60244 1454 aa15.71■□□□□ 0.11
VPS28-204ENST00000526054 UBR1Q8IWV7 1749 aa15.71■□□□□ 0.11
VPS28-204ENST00000526054 ABCC5O15440 1437 aa15.71■□□□□ 0.11
VPS28-204ENST00000526054 CFAP65Q6ZU64 1925 aaKnown RBP15.71■□□□□ 0.11
VPS28-204ENST00000526054 DAPK1P53355 1430 aa15.7■□□□□ 0.1
VPS28-204ENST00000526054 ILDR2Q71H61 639 aa15.7■□□□□ 0.1
VPS28-204ENST00000526054 FGD6Q6ZV73 1430 aa15.69■□□□□ 0.1
VPS28-204ENST00000526054 SYNMO15061 1565 aa15.67■□□□□ 0.1
VPS28-204ENST00000526054 RRP7BPQ9NSQ0 103 aa15.66■□□□□ 0.1
VPS28-204ENST00000526054 ARHGAP31Q2M1Z3 1444 aa15.66■□□□□ 0.1
VPS28-204ENST00000526054 SCAF1Q9H7N4 1312 aaKnown RBP15.65■□□□□ 0.1
VPS28-204ENST00000526054 STRCP1A6NGW2 1772 aa15.64■□□□□ 0.1
VPS28-204ENST00000526054 PIK3C2BO00750 1634 aa15.64■□□□□ 0.09
VPS28-204ENST00000526054 SCAF11Q99590 1463 aaKnown RBP15.64■□□□□ 0.09
VPS28-204ENST00000526054 KANK1Q14678 1352 aa15.63■□□□□ 0.09
VPS28-204ENST00000526054 ANKRD30AQ9BXX3 1397 aa15.63■□□□□ 0.09
VPS28-204ENST00000526054 SLIT1O75093 1534 aa15.63■□□□□ 0.09
VPS28-204ENST00000526054 TOM1O60784 492 aa15.62■□□□□ 0.09
VPS28-204ENST00000526054 ARHGAP23Q9P227 1491 aa15.61■□□□□ 0.09
VPS28-204ENST00000526054 PIP4K2BP78356 416 aa15.61■□□□□ 0.09
VPS28-204ENST00000526054 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.61■□□□□ 0.099e-9■■■□□ 15.1
VPS28-204ENST00000526054 LMTK2Q8IWU2 1503 aa15.61■□□□□ 0.09
VPS28-204ENST00000526054 KDM5AP29375 1690 aaKnown RBP15.6■□□□□ 0.09
VPS28-204ENST00000526054 ALKQ9UM73 1620 aa15.6■□□□□ 0.09
VPS28-204ENST00000526054 ADGRL2O95490 1459 aa15.59■□□□□ 0.09
VPS28-204ENST00000526054 EFCAB6Q5THR3 1501 aa15.59■□□□□ 0.09
VPS28-204ENST00000526054 LRRC7Q96NW7 1537 aa15.59■□□□□ 0.09
VPS28-204ENST00000526054 CHIC2Q9UKJ5 165 aa15.59■□□□□ 0.09
VPS28-204ENST00000526054 SOCS7O14512 581 aa15.57■□□□□ 0.08
VPS28-204ENST00000526054 HSPA1LP34931 641 aa15.57■□□□□ 0.08
VPS28-204ENST00000526054 MED1Q15648 1581 aaPredicted RBP15.57■□□□□ 0.08
VPS28-204ENST00000526054 ADGRB3O60242 1522 aa15.55■□□□□ 0.08
VPS28-204ENST00000526054 TXNDC2Q86VQ3 553 aa15.55■□□□□ 0.08
VPS28-204ENST00000526054 TMEM2Q9UHN6 1383 aa15.54■□□□□ 0.08
VPS28-204ENST00000526054 LTKP29376 864 aa15.54■□□□□ 0.08
VPS28-204ENST00000526054 FAM50AQ14320 339 aaKnown RBP15.54■□□□□ 0.08
VPS28-204ENST00000526054 PPARGC1BQ86YN6 1023 aaKnown RBP15.54■□□□□ 0.08
VPS28-204ENST00000526054 STAG3Q9UJ98 1225 aa15.54■□□□□ 0.08
VPS28-204ENST00000526054 EID1Q9Y6B2 187 aa15.54■□□□□ 0.08
VPS28-204ENST00000526054 XIRP1Q702N8 1843 aaKnown RBP15.53■□□□□ 0.08
VPS28-204ENST00000526054 NOS1P29475 1434 aa15.52■□□□□ 0.08
VPS28-204ENST00000526054 TET3O43151 1660 aa15.52■□□□□ 0.08
VPS28-204ENST00000526054 ANKRD50Q9ULJ7 1429 aa15.51■□□□□ 0.07
VPS28-204ENST00000526054 RPRD2Q5VT52 1461 aaKnown RBP15.51■□□□□ 0.07
VPS28-204ENST00000526054 GCC2Q8IWJ2 1684 aa15.51■□□□□ 0.07
VPS28-204ENST00000526054 UNC13BO14795 1591 aa15.5■□□□□ 0.07
VPS28-204ENST00000526054 IDI1Q13907 227 aa15.49■□□□□ 0.07
VPS28-204ENST00000526054 MYO5BQ9ULV0 1848 aa15.48■□□□□ 0.07
VPS28-204ENST00000526054 NWD1Q149M9 1564 aa15.46■□□□□ 0.07
VPS28-204ENST00000526054 SENP3Q9H4L4 574 aaPredicted RBP15.46■□□□□ 0.07
VPS28-204ENST00000526054 SLC52A1Q9NWF4 448 aa15.45■□□□□ 0.06
VPS28-204ENST00000526054 NKTRP30414 1462 aaKnown RBP15.44■□□□□ 0.06
VPS28-204ENST00000526054 E9PCH4 1651 aa15.44■□□□□ 0.06
VPS28-204ENST00000526054 TMEM131LA2VDJ0 1609 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms