RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ATP10AO60312 1499 aa20.45■□□□□ 0.86
NUP54-217ENST00000514987 HNRNPUQ00839 825 aaKnown RBP eCLIP20.44■□□□□ 0.86
NUP54-217ENST00000514987 CARD11Q9BXL7 1154 aa20.44■□□□□ 0.86
NUP54-217ENST00000514987 RTEL1-TNFRSF6BF6WH68 1400 aa20.43■□□□□ 0.86
NUP54-217ENST00000514987 DCAF11Q8TEB1 546 aa20.42■□□□□ 0.86
NUP54-217ENST00000514987 FKBP8Q14318 412 aa20.41■□□□□ 0.86
NUP54-217ENST00000514987 LAMC1P11047 1609 aa20.4■□□□□ 0.86
NUP54-217ENST00000514987 TRPM1Q7Z4N2 1603 aa20.39■□□□□ 0.85
NUP54-217ENST00000514987 MRS2Q9HD23 443 aa20.38■□□□□ 0.85
NUP54-217ENST00000514987 PRAG1Q86YV5 1406 aa20.38■□□□□ 0.85
NUP54-217ENST00000514987 DHX29Q7Z478 1369 aaKnown RBP20.38■□□□□ 0.85
NUP54-217ENST00000514987 PLA2R1Q13018 1463 aa20.38■□□□□ 0.85
NUP54-217ENST00000514987 WDR7Q9Y4E6 1490 aa20.38■□□□□ 0.85
NUP54-217ENST00000514987 EIF2AK4Q9P2K8 1649 aaKnown RBP20.38■□□□□ 0.85
NUP54-217ENST00000514987 KDM2AQ9Y2K7 1162 aa20.37■□□□□ 0.85
NUP54-217ENST00000514987 KTN1Q86UP2 1357 aaKnown RBP20.36■□□□□ 0.85
NUP54-217ENST00000514987 TRAPPC8Q9Y2L5 1435 aa20.35■□□□□ 0.85
NUP54-217ENST00000514987 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.35■□□□□ 0.85
NUP54-217ENST00000514987 SPAG9O60271 1321 aaKnown RBP20.35■□□□□ 0.85
NUP54-217ENST00000514987 ABCA9Q8IUA7 1624 aa20.34■□□□□ 0.85
NUP54-217ENST00000514987 GPRASP1Q5JY77 1395 aa20.34■□□□□ 0.85
NUP54-217ENST00000514987 A2MP01023 1474 aa20.32■□□□□ 0.84
NUP54-217ENST00000514987 ZFYVE16Q7Z3T8 1539 aa20.32■□□□□ 0.84
NUP54-217ENST00000514987 ZBED9Q6R2W3 1325 aa20.32■□□□□ 0.84
NUP54-217ENST00000514987 CCDC184Q52MB2 194 aa20.31■□□□□ 0.84
NUP54-217ENST00000514987 ST20-MTHFSA0A0A6YYL1 179 aa20.29■□□□□ 0.84
NUP54-217ENST00000514987 STAC3Q96MF2 364 aa20.29■□□□□ 0.84
NUP54-217ENST00000514987 DEPDC5O75140 1603 aa20.29■□□□□ 0.84
NUP54-217ENST00000514987 ERICH6BQ5W0A0 696 aa20.29■□□□□ 0.84
NUP54-217ENST00000514987 FAM9BQ8IZU0 186 aa20.29■□□□□ 0.84
NUP54-217ENST00000514987 E9PCH4 1651 aa20.28■□□□□ 0.84
NUP54-217ENST00000514987 FANCAO15360 1455 aa20.28■□□□□ 0.84
NUP54-217ENST00000514987 INO80Q9ULG1 1556 aaPredicted RBP20.28■□□□□ 0.84
NUP54-217ENST00000514987 PRDM15P57071 1507 aaPredicted RBP20.27■□□□□ 0.84
NUP54-217ENST00000514987 POLR3GLQ9BT43 218 aa20.27■□□□□ 0.84
NUP54-217ENST00000514987 ATP7AQ04656 1500 aa20.26■□□□□ 0.83
NUP54-217ENST00000514987 TRPM2O94759 1503 aa20.24■□□□□ 0.83
NUP54-217ENST00000514987 TET3O43151 1660 aa20.24■□□□□ 0.83
NUP54-217ENST00000514987 RALBP1Q15311 655 aa20.24■□□□□ 0.83
NUP54-217ENST00000514987 RGL3Q3MIN7 710 aa20.24■□□□□ 0.83
NUP54-217ENST00000514987 KANK1Q14678 1352 aa20.24■□□□□ 0.83
NUP54-217ENST00000514987 PTPRTO14522 1441 aa20.22■□□□□ 0.83
NUP54-217ENST00000514987 AFAP1Q8N556 730 aa20.21■□□□□ 0.83
NUP54-217ENST00000514987 BCANQ96GW7 911 aa20.21■□□□□ 0.83
NUP54-217ENST00000514987 SPHKAPQ2M3C7 1700 aa20.21■□□□□ 0.83
NUP54-217ENST00000514987 RNF17Q9BXT8 1623 aaKnown RBP20.21■□□□□ 0.83
NUP54-217ENST00000514987 VWDEQ8N2E2 1590 aa20.21■□□□□ 0.83
NUP54-217ENST00000514987 ADGRL1O94910 1474 aa20.2■□□□□ 0.82
NUP54-217ENST00000514987 ASXL2Q76L83 1435 aa20.2■□□□□ 0.82
NUP54-217ENST00000514987 CEP152O94986 1710 aa20.2■□□□□ 0.82
NUP54-217ENST00000514987 NEURL4Q96JN8 1562 aa20.2■□□□□ 0.82
NUP54-217ENST00000514987 BRD4O60885 1362 aaPredicted RBP20.19■□□□□ 0.82
NUP54-217ENST00000514987 WASHC2CQ9Y4E1 1318 aa20.19■□□□□ 0.82
NUP54-217ENST00000514987 COL17A1Q9UMD9 1497 aaPredicted RBP20.19■□□□□ 0.82
NUP54-217ENST00000514987 SCAPERQ9BY12 1400 aa20.18■□□□□ 0.82
NUP54-217ENST00000514987 MYBBP1AQ9BQG0 1328 aaKnown RBP20.18■□□□□ 0.82
NUP54-217ENST00000514987 CFAP74Q9C0B2 1584 aa20.17■□□□□ 0.82
NUP54-217ENST00000514987 NBPF1Q3BBV0 1214 aa20.17■□□□□ 0.82
NUP54-217ENST00000514987 TMC1Q8TDI8 760 aa20.17■□□□□ 0.82
NUP54-217ENST00000514987 TSHZ2Q9NRE2 1034 aa20.17■□□□□ 0.82
NUP54-217ENST00000514987 NPM1P06748 294 aaKnown RBP eCLIP20.16■□□□□ 0.82
NUP54-217ENST00000514987 MADDQ8WXG6 1647 aa20.15■□□□□ 0.82
NUP54-217ENST00000514987 PNISRQ8TF01 805 aaKnown RBP20.14■□□□□ 0.81
NUP54-217ENST00000514987 SMG6Q86US8 1419 aaKnown RBP20.14■□□□□ 0.81
NUP54-217ENST00000514987 TMF1P82094 1093 aa20.13■□□□□ 0.81
NUP54-217ENST00000514987 OSCARQ8IYS5 282 aa20.13■□□□□ 0.81
NUP54-217ENST00000514987 TESK2Q96S53 571 aa20.12■□□□□ 0.81
NUP54-217ENST00000514987 ZNF518AQ6AHZ1 1483 aa20.12■□□□□ 0.81
NUP54-217ENST00000514987 CLTCL1P53675 1640 aa20.12■□□□□ 0.81
NUP54-217ENST00000514987 KIAA1210Q9ULL0 1709 aa20.1■□□□□ 0.81
NUP54-217ENST00000514987 LRPPRCP42704 1394 aaKnown RBP20.1■□□□□ 0.81
NUP54-217ENST00000514987 PARD3Q8TEW0 1356 aa20.1■□□□□ 0.81
NUP54-217ENST00000514987 IQGAP1P46940 1657 aa20.1■□□□□ 0.81
NUP54-217ENST00000514987 KIF3BO15066 747 aa20.08■□□□□ 0.81
NUP54-217ENST00000514987 MROH1Q8NDA8 1641 aa20.08■□□□□ 0.81
NUP54-217ENST00000514987 KIDINS220Q9ULH0 1771 aa20.08■□□□□ 0.8
NUP54-217ENST00000514987 NLRP13Q86W25 1043 aa20.08■□□□□ 0.8
NUP54-217ENST00000514987 MYT1LQ9UL68 1186 aa20.08■□□□□ 0.8
NUP54-217ENST00000514987 LMTK2Q8IWU2 1503 aa20.07■□□□□ 0.8
NUP54-217ENST00000514987 CDCA8Q53HL2 280 aa20.07■□□□□ 0.8
NUP54-217ENST00000514987 PPP4R2Q9NY27 417 aa20.07■□□□□ 0.8
NUP54-217ENST00000514987 PER1O15534 1290 aaPredicted RBP20.06■□□□□ 0.8
NUP54-217ENST00000514987 SLC24A1O60721 1099 aa20.06■□□□□ 0.8
NUP54-217ENST00000514987 INSRP06213 1382 aa20.06■□□□□ 0.8
NUP54-217ENST00000514987 DISP3Q9P2K9 1392 aa20.06■□□□□ 0.8
NUP54-217ENST00000514987 SCAF11Q99590 1463 aaKnown RBP20.06■□□□□ 0.8
NUP54-217ENST00000514987 EFCAB6Q5THR3 1501 aa20.05■□□□□ 0.8
NUP54-217ENST00000514987 NUDCQ9Y266 331 aa20.04■□□□□ 0.8
NUP54-217ENST00000514987 ZMYM4Q5VZL5 1548 aa20.04■□□□□ 0.8
NUP54-217ENST00000514987 MYOM2P54296 1465 aa20.03■□□□□ 0.8
NUP54-217ENST00000514987 CNGB1Q14028 1251 aaPredicted RBP20.03■□□□□ 0.8
NUP54-217ENST00000514987 EIF3AQ14152 1382 aaKnown RBP20.03■□□□□ 0.8
NUP54-217ENST00000514987 KIF1BO60333 1816 aa20.03■□□□□ 0.8
NUP54-217ENST00000514987 MLH3Q9UHC1 1453 aa20.02■□□□□ 0.8
NUP54-217ENST00000514987 CD109Q6YHK3 1445 aa20.02■□□□□ 0.8
NUP54-217ENST00000514987 POGZQ7Z3K3 1410 aa20.01■□□□□ 0.79
NUP54-217ENST00000514987 MYT1Q01538 1121 aa19.99■□□□□ 0.79
NUP54-217ENST00000514987 MAP3K4Q9Y6R4 1608 aa19.98■□□□□ 0.79
NUP54-217ENST00000514987 PANK3Q9H999 370 aa19.98■□□□□ 0.79
NUP54-217ENST00000514987 SYNMO15061 1565 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms