RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 NISCHQ9Y2I1 1504 aa31.74■■■□□ 2.67
NUP54-217ENST00000514987 CCDC180Q9P1Z9 1646 aa27.36■■□□□ 1.97
NUP54-217ENST00000514987 ZCCHC6Q5VYS8 1495 aaKnown RBP26.8■■□□□ 1.88
NUP54-217ENST00000514987 SHROOM4Q9ULL8 1493 aa26.37■■□□□ 1.81
NUP54-217ENST00000514987 DCAF1Q9Y4B6 1507 aa26.29■■□□□ 1.8
NUP54-217ENST00000514987 DCAF8L2P0C7V8 631 aa25.96■■□□□ 1.75
NUP54-217ENST00000514987 SUPT5HO00267 1087 aaKnown RBP25.78■■□□□ 1.72
NUP54-217ENST00000514987 MYO15BQ96JP2 1530 aa25.7■■□□□ 1.7
NUP54-217ENST00000514987 NACADO15069 1562 aa25.32■■□□□ 1.64
NUP54-217ENST00000514987 ABCC9O60706 1549 aa25.24■■□□□ 1.63
NUP54-217ENST00000514987 SCRIBQ14160 1630 aa25.22■■□□□ 1.63
NUP54-217ENST00000514987 CHIC1Q5VXU3 224 aa25.09■■□□□ 1.61
NUP54-217ENST00000514987 RB1CC1Q8TDY2 1594 aa24.92■■□□□ 1.58
NUP54-217ENST00000514987 RSF1Q96T23 1441 aaPredicted RBP24.9■■□□□ 1.58
NUP54-217ENST00000514987 CECR2Q9BXF3 1484 aa24.56■■□□□ 1.52
NUP54-217ENST00000514987 MROH2BQ7Z745 1585 aa24.52■■□□□ 1.52
NUP54-217ENST00000514987 BAZ1AQ9NRL2 1556 aaPredicted RBP24.48■■□□□ 1.51
NUP54-217ENST00000514987 UNC13AQ9UPW8 1703 aa24.39■■□□□ 1.5
NUP54-217ENST00000514987 WIZO95785 1651 aa24.37■■□□□ 1.49
NUP54-217ENST00000514987 SMARCA4P51532 1647 aa24.24■■□□□ 1.47
NUP54-217ENST00000514987 TRIM41Q8WV44 630 aa24.23■■□□□ 1.47
NUP54-217ENST00000514987 TOP2AP11388 1531 aaKnown RBP24.16■■□□□ 1.46
NUP54-217ENST00000514987 LOC105371045A0A1W2PR82 267 aa24.12■■□□□ 1.45
NUP54-217ENST00000514987 BICRAQ9NZM4 1560 aa24.1■■□□□ 1.45
NUP54-217ENST00000514987 EIF4G1Q04637 1599 aaKnown RBP24.04■■□□□ 1.44
NUP54-217ENST00000514987 SMARCA2P51531 1590 aa23.95■■□□□ 1.42
NUP54-217ENST00000514987 PEG3Q9GZU2 1588 aa23.93■■□□□ 1.42
NUP54-217ENST00000514987 CCDC88BA6NC98 1476 aa23.92■■□□□ 1.42
NUP54-217ENST00000514987 PABPN1Q86U42 306 aaKnown RBP eCLIP23.86■■□□□ 1.41
NUP54-217ENST00000514987 PCGF6Q9BYE7 350 aa23.84■■□□□ 1.41
NUP54-217ENST00000514987 HRCP23327 699 aa23.82■■□□□ 1.4
NUP54-217ENST00000514987 FAM9AQ8IZU1 332 aaPredicted RBP23.74■■□□□ 1.39
NUP54-217ENST00000514987 TRIM26Q12899 539 aaPredicted RBP23.72■■□□□ 1.39
NUP54-217ENST00000514987 ATAD2BQ9ULI0 1458 aa23.65■■□□□ 1.38
NUP54-217ENST00000514987 ABCC8Q09428 1581 aa23.62■■□□□ 1.37
NUP54-217ENST00000514987 BAZ1BQ9UIG0 1483 aaKnown RBP23.57■■□□□ 1.36
NUP54-217ENST00000514987 EEA1Q15075 1411 aa23.56■■□□□ 1.36
NUP54-217ENST00000514987 WRNQ14191 1432 aaPredicted RBP eCLIP23.44■■□□□ 1.34
NUP54-217ENST00000514987 HMGXB3Q12766 1538 aa23.38■■□□□ 1.33
NUP54-217ENST00000514987 EHMT2Q96KQ7 1210 aa23.35■■□□□ 1.33
NUP54-217ENST00000514987 SOGA1O94964 1423 aa23.34■■□□□ 1.33
NUP54-217ENST00000514987 NCAPD3P42695 1498 aa23.34■■□□□ 1.33
NUP54-217ENST00000514987 CSRNP3Q8WYN3 585 aa23.31■■□□□ 1.32
NUP54-217ENST00000514987 TNIKQ9UKE5 1360 aa23.31■■□□□ 1.32
NUP54-217ENST00000514987 SYNJ1O43426 1573 aa23.27■■□□□ 1.32
NUP54-217ENST00000514987 ZEB1P37275 1124 aaPredicted RBP23.24■■□□□ 1.31
NUP54-217ENST00000514987 GOLGA3Q08378 1498 aa23.23■■□□□ 1.31
NUP54-217ENST00000514987 CEP162Q5TB80 1403 aa23.21■■□□□ 1.31
NUP54-217ENST00000514987 RUSC2Q8N2Y8 1516 aa23.19■■□□□ 1.3
NUP54-217ENST00000514987 KIF21BO75037 1637 aa23.18■■□□□ 1.3
NUP54-217ENST00000514987 TOP2BQ02880 1626 aa23.16■■□□□ 1.3
NUP54-217ENST00000514987 CEP164Q9UPV0 1460 aa23.16■■□□□ 1.3
NUP54-217ENST00000514987 BIVM-ERCC5R4GMW8 1640 aa23.13■■□□□ 1.29
NUP54-217ENST00000514987 UBTFP17480 764 aaKnown RBP23.09■■□□□ 1.29
NUP54-217ENST00000514987 PPARGC1BQ86YN6 1023 aaKnown RBP23.03■■□□□ 1.28
NUP54-217ENST00000514987 CFTRP13569 1480 aa23.02■■□□□ 1.28
NUP54-217ENST00000514987 PRDM2Q13029 1718 aa22.98■■□□□ 1.27
NUP54-217ENST00000514987 CUX1P39880 1505 aa22.9■■□□□ 1.26
NUP54-217ENST00000514987 ERICH3Q5RHP9 1530 aa22.89■■□□□ 1.25
NUP54-217ENST00000514987 CLIP1P30622 1438 aa22.87■■□□□ 1.25
NUP54-217ENST00000514987 RAPGEF2Q9Y4G8 1499 aa22.84■■□□□ 1.25
NUP54-217ENST00000514987 PRXQ9BXM0 1461 aa22.81■■□□□ 1.24
NUP54-217ENST00000514987 KIF27Q86VH2 1401 aa22.8■■□□□ 1.24
NUP54-217ENST00000514987 CADPSQ9ULU8 1353 aa22.8■■□□□ 1.24
NUP54-217ENST00000514987 CC2D2AQ9P2K1 1620 aa22.79■■□□□ 1.24
NUP54-217ENST00000514987 VPS8Q8N3P4 1428 aa22.78■■□□□ 1.24
NUP54-217ENST00000514987 APLP2Q06481 763 aa22.64■■□□□ 1.22
NUP54-217ENST00000514987 CCER1Q8TC90 406 aaPredicted RBP22.64■■□□□ 1.22
NUP54-217ENST00000514987 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.58■■□□□ 1.2
NUP54-217ENST00000514987 TTBK1Q5TCY1 1321 aaPredicted RBP22.56■■□□□ 1.2
NUP54-217ENST00000514987 CUX2O14529 1486 aa22.55■■□□□ 1.2
NUP54-217ENST00000514987 FANCD2Q9BXW9 1451 aa22.54■■□□□ 1.2
NUP54-217ENST00000514987 FGD5Q6ZNL6 1462 aa22.53■■□□□ 1.2
NUP54-217ENST00000514987 ARAP1Q96P48 1450 aa22.52■■□□□ 1.2
NUP54-217ENST00000514987 DNMBPQ6XZF7 1577 aa22.49■■□□□ 1.19
NUP54-217ENST00000514987 IGF1RP08069 1367 aa22.49■■□□□ 1.19
NUP54-217ENST00000514987 LAMC3Q9Y6N6 1575 aa22.44■■□□□ 1.18
NUP54-217ENST00000514987 RANGAP1P46060 587 aaPredicted RBP22.42■■□□□ 1.18
NUP54-217ENST00000514987 CARMIL1Q5VZK9 1371 aa22.41■■□□□ 1.18
NUP54-217ENST00000514987 ARHGAP35Q9NRY4 1499 aa22.38■■□□□ 1.17
NUP54-217ENST00000514987 ABCA10Q8WWZ4 1543 aa22.38■■□□□ 1.17
NUP54-217ENST00000514987 TOPBP1Q92547 1522 aa22.38■■□□□ 1.17
NUP54-217ENST00000514987 POLA1P09884 1462 aaPredicted RBP22.31■■□□□ 1.16
NUP54-217ENST00000514987 MAP3K1Q13233 1512 aa22.3■■□□□ 1.16
NUP54-217ENST00000514987 NESP48681 1621 aa22.29■■□□□ 1.16
NUP54-217ENST00000514987 CUL7Q14999 1698 aa22.29■■□□□ 1.16
NUP54-217ENST00000514987 HNRNPUL2Q1KMD3 747 aaKnown RBP22.28■■□□□ 1.16
NUP54-217ENST00000514987 PDS5BQ9NTI5 1447 aa22.26■■□□□ 1.15
NUP54-217ENST00000514987 RRBP1Q9P2E9 1410 aaKnown RBP22.23■■□□□ 1.15
NUP54-217ENST00000514987 RAD54L2Q9Y4B4 1467 aa22.22■■□□□ 1.15
NUP54-217ENST00000514987 WDR97A6NE52 1622 aa22.21■■□□□ 1.15
NUP54-217ENST00000514987 FHAD1B1AJZ9 1412 aa22.21■■□□□ 1.15
NUP54-217ENST00000514987 URB2Q14146 1524 aaKnown RBP22.19■■□□□ 1.14
NUP54-217ENST00000514987 KANK4Q5T7N3 995 aaPredicted RBP22.19■■□□□ 1.14
NUP54-217ENST00000514987 EFCAB5A4FU69 1503 aa22.18■■□□□ 1.14
NUP54-217ENST00000514987 TIAM1Q13009 1591 aa22.16■■□□□ 1.14
NUP54-217ENST00000514987 CLSPNQ9HAW4 1339 aa22.16■■□□□ 1.14
NUP54-217ENST00000514987 CTTNBP2Q8WZ74 1663 aa22.13■■□□□ 1.13
NUP54-217ENST00000514987 ABCA5Q8WWZ7 1642 aa22.12■■□□□ 1.13
NUP54-217ENST00000514987 CCNB3Q8WWL7 1395 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms