RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.06■□□□□ 0.642e-11■■□□□ 11.8
NUP54-217ENST00000514987 RBM15Q96T37 977 aaKnown RBP eCLIP15.65■□□□□ 0.13e-11■■■■■ 43.2
NUP54-217ENST00000514987 DDX3XO00571 662 aaKnown RBP eCLIP16.16■□□□□ 0.183e-11■■□□□ 12
NUP54-217ENST00000514987 GPKOWQ92917 476 aaPredicted RBP eCLIP16.81■□□□□ 0.281e-10■■■□□ 14.7
NUP54-217ENST00000514987 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.64□□□□□ -0.237e-10■■■■■ 34.7
NUP54-217ENST00000514987 MATR3P43243 847 aaKnown RBP eCLIP16.17■□□□□ 0.181e-9■■■■□ 19.8
NUP54-217ENST00000514987 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.12■□□□□ 0.173e-9■□□□□ 10
NUP54-217ENST00000514987 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.18■□□□□ 0.56e-8■■■□□ 16.7
NUP54-217ENST00000514987 YBX3P16989 372 aaKnown RBP eCLIP15.49■□□□□ 0.071e-7■■■■■ 28.9
NUP54-217ENST00000514987 HNRNPMP52272 730 aaKnown RBP eCLIP20.68■□□□□ 0.91e-7■■■■□ 25.9
NUP54-217ENST00000514987 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.2□□□□□ -0.622e-7■■■■■ 42.4
NUP54-217ENST00000514987 KHSRPQ92945 711 aaKnown RBP eCLIP15.46■□□□□ 0.074e-7■■■■□ 23.6
NUP54-217ENST00000514987 U2AF2P26368 475 aaKnown RBP eCLIP17.22■□□□□ 0.355e-7■□□□□ 8.9
NUP54-217ENST00000514987 PTBP1P26599 531 aaKnown RBP eCLIP13.77□□□□□ -0.215e-7■■■■□ 20.9
NUP54-217ENST00000514987 SRSF1Q07955 248 aaKnown RBP eCLIP11.21□□□□□ -0.617e-7■□□□□ 8.2
NUP54-217ENST00000514987 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.07□□□□□ -0.162e-6■□□□□ 10.7
NUP54-217ENST00000514987 ZC3H11AO75152 810 aaKnown RBP eCLIP16.04■□□□□ 0.162e-6■■■■□ 20.6
NUP54-217ENST00000514987 SF3B1O75533 1304 aaKnown RBP eCLIP15.4■□□□□ 0.062e-6■■■■■ 120.6
NUP54-217ENST00000514987 PCBP2Q15366 365 aaKnown RBP eCLIP14.71□□□□□ -0.052e-6■■■■■ 27.6
NUP54-217ENST00000514987 SF3B4Q15427 424 aaKnown RBP eCLIP13.49□□□□□ -0.252e-6■■□□□ 13.6
NUP54-217ENST00000514987 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.71□□□□□ -0.054e-6■□□□□ 8.6
NUP54-217ENST00000514987 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.67■□□□□ 0.95e-6■□□□□ 11
NUP54-217ENST00000514987 ILF3Q12906 894 aaKnown RBP eCLIP13.91□□□□□ -0.185e-6■■□□□ 11.7
NUP54-217ENST00000514987 HNRNPKP61978 463 aaKnown RBP eCLIP13.63□□□□□ -0.237e-6■□□□□ 8.5
NUP54-217ENST00000514987 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.36■□□□□ 0.379e-6■□□□□ 11.3
Retrieved 25 of 25 RNA–protein pairs in 10.7 ms