RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 SCAF1Q9H7N4 1312 aaKnown RBP31.06■■■□□ 2.56
HMGCS1-206ENST00000511774 SHANK2Q9UPX8 1470 aa31.06■■■□□ 2.56
HMGCS1-206ENST00000511774 ALKQ9UM73 1620 aa31.06■■■□□ 2.56
HMGCS1-206ENST00000511774 MTUS2Q5JR59 1369 aa31.05■■■□□ 2.56
HMGCS1-206ENST00000511774 TNRQ92752 1358 aa31.05■■■□□ 2.56
HMGCS1-206ENST00000511774 CPS1P31327 1500 aa31.04■■■□□ 2.56
HMGCS1-206ENST00000511774 DHX29Q7Z478 1369 aaKnown RBP31.04■■■□□ 2.56
HMGCS1-206ENST00000511774 VWDEQ8N2E2 1590 aa31.03■■■□□ 2.56
HMGCS1-206ENST00000511774 RTEL1-TNFRSF6BF6WH68 1400 aa31.02■■■□□ 2.56
HMGCS1-206ENST00000511774 PZPP20742 1482 aa31■■■□□ 2.55
HMGCS1-206ENST00000511774 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.98■■■□□ 2.55
HMGCS1-206ENST00000511774 KDM5DQ9BY66 1539 aa30.97■■■□□ 2.55
HMGCS1-206ENST00000511774 KIF3BO15066 747 aa30.96■■■□□ 2.55
HMGCS1-206ENST00000511774 TOM1O60784 492 aa30.96■■■□□ 2.55
HMGCS1-206ENST00000511774 EHBP1L1Q8N3D4 1523 aa30.94■■■□□ 2.54
HMGCS1-206ENST00000511774 STRCP1A6NGW2 1772 aa30.92■■■□□ 2.54
HMGCS1-206ENST00000511774 CEP162Q5TB80 1403 aa30.9■■■□□ 2.54
HMGCS1-206ENST00000511774 MIA2Q96PC5 1412 aa30.9■■■□□ 2.54
HMGCS1-206ENST00000511774 MED14O60244 1454 aa30.89■■■□□ 2.54
HMGCS1-206ENST00000511774 FAM135AQ9P2D6 1515 aa30.89■■■□□ 2.54
HMGCS1-206ENST00000511774 DEPDC5O75140 1603 aa30.89■■■□□ 2.54
HMGCS1-206ENST00000511774 ANKLE2Q86XL3 938 aa30.89■■■□□ 2.54
HMGCS1-206ENST00000511774 NPHP4O75161 1426 aaPredicted RBP30.89■■■□□ 2.53
HMGCS1-206ENST00000511774 CCDC141Q6ZP82 1450 aa30.89■■■□□ 2.53
HMGCS1-206ENST00000511774 UGGT1Q9NYU2 1555 aa30.88■■■□□ 2.53
HMGCS1-206ENST00000511774 WASHC2CQ9Y4E1 1318 aa30.86■■■□□ 2.53
HMGCS1-206ENST00000511774 CAMSAP2Q08AD1 1489 aa30.86■■■□□ 2.53
HMGCS1-206ENST00000511774 NLRP1Q9C000 1473 aa30.86■■■□□ 2.53
HMGCS1-206ENST00000511774 IQGAP1P46940 1657 aa30.84■■■□□ 2.53
HMGCS1-206ENST00000511774 THEMISQ8N1K5 641 aaPredicted RBP30.84■■■□□ 2.53
HMGCS1-206ENST00000511774 LRRC7Q96NW7 1537 aa30.79■■■□□ 2.52
HMGCS1-206ENST00000511774 NCOA2Q15596 1464 aa30.79■■■□□ 2.52
HMGCS1-206ENST00000511774 SENP3Q9H4L4 574 aaPredicted RBP30.78■■■□□ 2.52
HMGCS1-206ENST00000511774 PHF23Q9BUL5 403 aaPredicted RBP30.75■■■□□ 2.51
HMGCS1-206ENST00000511774 RNF17Q9BXT8 1623 aaKnown RBP30.75■■■□□ 2.51
HMGCS1-206ENST00000511774 ARHGEF5Q12774 1597 aa30.75■■■□□ 2.51
HMGCS1-206ENST00000511774 ABCC3O15438 1527 aa30.74■■■□□ 2.51
HMGCS1-206ENST00000511774 ZC3H13Q5T200 1668 aaKnown RBP30.74■■■□□ 2.51
HMGCS1-206ENST00000511774 SYNMO15061 1565 aa30.71■■■□□ 2.51
HMGCS1-206ENST00000511774 CFAP65Q6ZU64 1925 aaKnown RBP30.69■■■□□ 2.5
HMGCS1-206ENST00000511774 ERVK-7P63135 1459 aa30.69■■■□□ 2.5
HMGCS1-206ENST00000511774 MROH1Q8NDA8 1641 aa30.69■■■□□ 2.5
HMGCS1-206ENST00000511774 RSPH4AQ5TD94 716 aa30.68■■■□□ 2.5
HMGCS1-206ENST00000511774 UBR1Q8IWV7 1749 aa30.67■■■□□ 2.5
HMGCS1-206ENST00000511774 XIRP1Q702N8 1843 aaKnown RBP30.66■■■□□ 2.5
HMGCS1-206ENST00000511774 RGS17Q9UGC6 210 aaPredicted RBP30.65■■■□□ 2.5
HMGCS1-206ENST00000511774 CEP152O94986 1710 aa30.64■■■□□ 2.5
HMGCS1-206ENST00000511774 MAST1Q9Y2H9 1570 aa30.62■■■□□ 2.49
HMGCS1-206ENST00000511774 TSPY4P0CV99 314 aa30.6■■■□□ 2.49
HMGCS1-206ENST00000511774 TSPY10P0CW01 314 aa30.6■■■□□ 2.49
HMGCS1-206ENST00000511774 EIF2AK4Q9P2K8 1649 aaKnown RBP30.59■■■□□ 2.49
HMGCS1-206ENST00000511774 LTKP29376 864 aa30.58■■■□□ 2.49
HMGCS1-206ENST00000511774 SCAF11Q99590 1463 aaKnown RBP30.57■■■□□ 2.48
HMGCS1-206ENST00000511774 ARHGAP23Q9P227 1491 aa30.56■■■□□ 2.48
HMGCS1-206ENST00000511774 SLIT1O75093 1534 aa30.52■■■□□ 2.48
HMGCS1-206ENST00000511774 LRRC9Q6ZRR7 1453 aa30.48■■■□□ 2.47
HMGCS1-206ENST00000511774 TXNDC2Q86VQ3 553 aa30.47■■■□□ 2.47
HMGCS1-206ENST00000511774 PIK3C2BO00750 1634 aa30.44■■■□□ 2.46
HMGCS1-206ENST00000511774 DUOX2Q9NRD8 1548 aa30.42■■■□□ 2.46
HMGCS1-206ENST00000511774 PRDM15P57071 1507 aaPredicted RBP30.42■■■□□ 2.46
HMGCS1-206ENST00000511774 ARHGAP31Q2M1Z3 1444 aa30.41■■■□□ 2.46
HMGCS1-206ENST00000511774 POTEAQ6S8J7 498 aa30.41■■■□□ 2.46
HMGCS1-206ENST00000511774 FAM135BQ49AJ0 1406 aa30.4■■■□□ 2.46
HMGCS1-206ENST00000511774 KANK4Q5T7N3 995 aaPredicted RBP30.39■■■□□ 2.46
HMGCS1-206ENST00000511774 TMEM2Q9UHN6 1383 aa30.36■■■□□ 2.45
HMGCS1-206ENST00000511774 MAP3K1Q13233 1512 aa30.36■■■□□ 2.45
HMGCS1-206ENST00000511774 TMEM94Q12767 1356 aa30.35■■■□□ 2.45
HMGCS1-206ENST00000511774 MYOM3Q5VTT5 1437 aa30.35■■■□□ 2.45
HMGCS1-206ENST00000511774 ROBO1Q9Y6N7 1651 aa30.35■■■□□ 2.45
HMGCS1-206ENST00000511774 RBM33Q96EV2 1170 aaKnown RBP30.33■■■□□ 2.45
HMGCS1-206ENST00000511774 KIF15Q9NS87 1388 aa30.32■■■□□ 2.44
HMGCS1-206ENST00000511774 EID1Q9Y6B2 187 aa30.32■■■□□ 2.44
HMGCS1-206ENST00000511774 CROCC2H7BZ55 1655 aa30.32■■■□□ 2.44
HMGCS1-206ENST00000511774 VPS8Q8N3P4 1428 aa30.31■■■□□ 2.44
HMGCS1-206ENST00000511774 TET3O43151 1660 aa30.3■■■□□ 2.44
HMGCS1-206ENST00000511774 ABCC5O15440 1437 aa30.28■■■□□ 2.44
HMGCS1-206ENST00000511774 ERBINQ96RT1 1412 aa30.28■■■□□ 2.44
HMGCS1-206ENST00000511774 SETD1AO15047 1707 aaKnown RBP30.27■■■□□ 2.44
HMGCS1-206ENST00000511774 EFCAB6Q5THR3 1501 aa30.27■■■□□ 2.44
HMGCS1-206ENST00000511774 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.27■■■□□ 2.442e-29■■■■■ 33.2
HMGCS1-206ENST00000511774 RRP7BPQ9NSQ0 103 aa30.27■■■□□ 2.44
HMGCS1-206ENST00000511774 KDM5AP29375 1690 aaKnown RBP30.27■■■□□ 2.44
HMGCS1-206ENST00000511774 SLC26A8Q96RN1 970 aa30.26■■■□□ 2.43
HMGCS1-206ENST00000511774 KCNA6P17658 529 aa30.25■■■□□ 2.43
HMGCS1-206ENST00000511774 IDI1Q13907 227 aa30.25■■■□□ 2.43
HMGCS1-206ENST00000511774 PROSER2Q86WR7 435 aaPredicted RBP30.22■■■□□ 2.43
HMGCS1-206ENST00000511774 NWD1Q149M9 1564 aa30.22■■■□□ 2.43
HMGCS1-206ENST00000511774 STAG3Q9UJ98 1225 aa30.2■■■□□ 2.43
HMGCS1-206ENST00000511774 LMTK2Q8IWU2 1503 aa30.19■■■□□ 2.42
HMGCS1-206ENST00000511774 PTPN23Q9H3S7 1636 aa30.18■■■□□ 2.42
HMGCS1-206ENST00000511774 PHLPP1O60346 1717 aa30.16■■■□□ 2.42
HMGCS1-206ENST00000511774 NKTRP30414 1462 aaKnown RBP30.16■■■□□ 2.42
HMGCS1-206ENST00000511774 NOS1P29475 1434 aa30.15■■■□□ 2.42
HMGCS1-206ENST00000511774 DAPK1P53355 1430 aa30.15■■■□□ 2.42
HMGCS1-206ENST00000511774 ADGRB3O60242 1522 aa30.15■■■□□ 2.42
HMGCS1-206ENST00000511774 KANK1Q14678 1352 aa30.13■■■□□ 2.41
HMGCS1-206ENST00000511774 LOC105371045A0A1W2PR82 267 aa30.12■■■□□ 2.41
HMGCS1-206ENST00000511774 MYO5BQ9ULV0 1848 aa30.1■■■□□ 2.41
HMGCS1-206ENST00000511774 CHD2O14647 1828 aaKnown RBP30.09■■■□□ 2.41
HMGCS1-206ENST00000511774 COL16A1Q07092 1604 aaPredicted RBP30.08■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms