RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 NISCHQ9Y2I1 1504 aa48.92■■■■■ 5.42
HMGCS1-206ENST00000511774 ABCC9O60706 1549 aa44.82■■■■■ 4.77
HMGCS1-206ENST00000511774 CCDC180Q9P1Z9 1646 aa44.13■■■■■ 4.66
HMGCS1-206ENST00000511774 DNAJC5BQ9UF47 199 aa42.71■■■■■ 4.43
HMGCS1-206ENST00000511774 RB1CC1Q8TDY2 1594 aa42.28■■■■■ 4.36
HMGCS1-206ENST00000511774 NACADO15069 1562 aa41.84■■■■■ 4.29
HMGCS1-206ENST00000511774 PABPN1Q86U42 306 aaKnown RBP eCLIP41.63■■■■■ 4.25
HMGCS1-206ENST00000511774 UNC13AQ9UPW8 1703 aa41.51■■■■■ 4.24
HMGCS1-206ENST00000511774 DCAF8L2P0C7V8 631 aa41.49■■■■■ 4.23
HMGCS1-206ENST00000511774 BICRAQ9NZM4 1560 aa41.25■■■■■ 4.19
HMGCS1-206ENST00000511774 MYO15BQ96JP2 1530 aa41.04■■■■■ 4.16
HMGCS1-206ENST00000511774 CC2D2AQ9P2K1 1620 aa40.45■■■■■ 4.07
HMGCS1-206ENST00000511774 ZCCHC6Q5VYS8 1495 aaKnown RBP40.42■■■■■ 4.06
HMGCS1-206ENST00000511774 CECR2Q9BXF3 1484 aa40.39■■■■■ 4.06
HMGCS1-206ENST00000511774 SHROOM4Q9ULL8 1493 aa40.39■■■■■ 4.06
HMGCS1-206ENST00000511774 DCAF1Q9Y4B6 1507 aa40.32■■■■■ 4.04
HMGCS1-206ENST00000511774 SCRIBQ14160 1630 aa40.25■■■■■ 4.03
HMGCS1-206ENST00000511774 EIF4G1Q04637 1599 aaKnown RBP40.19■■■■■ 4.02
HMGCS1-206ENST00000511774 DNAJC5Q9H3Z4 198 aa39.53■■■■□ 3.92
HMGCS1-206ENST00000511774 CUX2O14529 1486 aa38.79■■■■□ 3.8
HMGCS1-206ENST00000511774 NCAPD3P42695 1498 aa38.67■■■■□ 3.78
HMGCS1-206ENST00000511774 ERCC6Q03468 1493 aa38.63■■■■□ 3.77
HMGCS1-206ENST00000511774 ATAD2BQ9ULI0 1458 aa38.5■■■■□ 3.75
HMGCS1-206ENST00000511774 NESP48681 1621 aa38.38■■■■□ 3.74
HMGCS1-206ENST00000511774 HMGXB3Q12766 1538 aa38.32■■■■□ 3.72
HMGCS1-206ENST00000511774 SMARCA4P51532 1647 aa38.31■■■■□ 3.72
HMGCS1-206ENST00000511774 SMARCA2P51531 1590 aa38.28■■■■□ 3.72
HMGCS1-206ENST00000511774 THOC2Q8NI27 1593 aaKnown RBP38.09■■■■□ 3.69
HMGCS1-206ENST00000511774 BAZ1BQ9UIG0 1483 aaKnown RBP38.04■■■■□ 3.68
HMGCS1-206ENST00000511774 BAZ1AQ9NRL2 1556 aaPredicted RBP37.95■■■■□ 3.67
HMGCS1-206ENST00000511774 PEG3Q9GZU2 1588 aa37.93■■■■□ 3.66
HMGCS1-206ENST00000511774 LAMC3Q9Y6N6 1575 aa37.87■■■■□ 3.65
HMGCS1-206ENST00000511774 KIF21AQ7Z4S6 1674 aa37.85■■■■□ 3.65
HMGCS1-206ENST00000511774 MROH2BQ7Z745 1585 aa37.76■■■■□ 3.63
HMGCS1-206ENST00000511774 PDS5BQ9NTI5 1447 aa37.62■■■■□ 3.61
HMGCS1-206ENST00000511774 TRIM41Q8WV44 630 aa37.53■■■■□ 3.6
HMGCS1-206ENST00000511774 CADPSQ9ULU8 1353 aa37.44■■■■□ 3.58
HMGCS1-206ENST00000511774 MRC2Q9UBG0 1479 aa37.41■■■■□ 3.58
HMGCS1-206ENST00000511774 WDR62O43379 1518 aa37.36■■■■□ 3.57
HMGCS1-206ENST00000511774 WIZO95785 1651 aa37.28■■■■□ 3.56
HMGCS1-206ENST00000511774 CEP164Q9UPV0 1460 aa37.12■■■■□ 3.53
HMGCS1-206ENST00000511774 FANCD2Q9BXW9 1451 aa37.05■■■■□ 3.52
HMGCS1-206ENST00000511774 CFTRP13569 1480 aa36.92■■■■□ 3.5
HMGCS1-206ENST00000511774 OSCARQ8IYS5 282 aa36.88■■■■□ 3.49
HMGCS1-206ENST00000511774 URB2Q14146 1524 aaKnown RBP36.85■■■■□ 3.49
HMGCS1-206ENST00000511774 RSF1Q96T23 1441 aaPredicted RBP36.7■■■■□ 3.47
HMGCS1-206ENST00000511774 TOP2AP11388 1531 aaKnown RBP36.68■■■■□ 3.46
HMGCS1-206ENST00000511774 RIMBP3CA6NJZ7 1639 aa36.61■■■■□ 3.45
HMGCS1-206ENST00000511774 RIMBP3BA6NNM3 1639 aa36.61■■■■□ 3.45
HMGCS1-206ENST00000511774 RIMBP3Q9UFD9 1639 aa36.61■■■■□ 3.45
HMGCS1-206ENST00000511774 PRDM2Q13029 1718 aa36.52■■■■□ 3.44
HMGCS1-206ENST00000511774 ZNF608Q9ULD9 1512 aaPredicted RBP36.52■■■■□ 3.44
HMGCS1-206ENST00000511774 ARHGEF11O15085 1522 aa36.39■■■■□ 3.42
HMGCS1-206ENST00000511774 IFT140Q96RY7 1462 aa36.38■■■■□ 3.41
HMGCS1-206ENST00000511774 CCDC88BA6NC98 1476 aa36.31■■■■□ 3.4
HMGCS1-206ENST00000511774 TOPBP1Q92547 1522 aa36.3■■■■□ 3.4
HMGCS1-206ENST00000511774 EIF4G3O43432 1585 aaKnown RBP36.24■■■■□ 3.39
HMGCS1-206ENST00000511774 CHD1O14646 1710 aa36.13■■■■□ 3.37
HMGCS1-206ENST00000511774 CYB5RLQ6IPT4 315 aa36.12■■■■□ 3.37
HMGCS1-206ENST00000511774 DNMBPQ6XZF7 1577 aa36.09■■■■□ 3.37
HMGCS1-206ENST00000511774 TARBP1Q13395 1621 aaKnown RBP36.08■■■■□ 3.37
HMGCS1-206ENST00000511774 AQRO60306 1485 aaKnown RBP eCLIP36.07■■■■□ 3.371e-9■■■■■ 29.3
HMGCS1-206ENST00000511774 ABCC8Q09428 1581 aa36.04■■■■□ 3.36
HMGCS1-206ENST00000511774 ARAP1Q96P48 1450 aa36.04■■■■□ 3.36
HMGCS1-206ENST00000511774 POLA1P09884 1462 aaPredicted RBP35.9■■■■□ 3.34
HMGCS1-206ENST00000511774 TRHP20396 242 aaPredicted RBP35.86■■■■□ 3.33
HMGCS1-206ENST00000511774 FBLN2P98095 1184 aa35.86■■■■□ 3.33
HMGCS1-206ENST00000511774 RAD54L2Q9Y4B4 1467 aa35.82■■■■□ 3.32
HMGCS1-206ENST00000511774 TDRD9Q8NDG6 1382 aaKnown RBP35.74■■■■□ 3.31
HMGCS1-206ENST00000511774 CLASP1Q7Z460 1538 aa35.67■■■■□ 3.3
HMGCS1-206ENST00000511774 SOGA1O94964 1423 aa35.67■■■■□ 3.3
HMGCS1-206ENST00000511774 SNAPC4Q5SXM2 1469 aa35.67■■■■□ 3.3
HMGCS1-206ENST00000511774 FGD5Q6ZNL6 1462 aa35.58■■■■□ 3.29
HMGCS1-206ENST00000511774 WDR97A6NE52 1622 aa35.51■■■■□ 3.28
HMGCS1-206ENST00000511774 CUX1P39880 1505 aa35.5■■■■□ 3.27
HMGCS1-206ENST00000511774 SYNJ1O43426 1573 aa35.5■■■■□ 3.27
HMGCS1-206ENST00000511774 MAGI1Q96QZ7 1491 aaPredicted RBP35.48■■■■□ 3.27
HMGCS1-206ENST00000511774 CHMP7Q8WUX9 453 aaPredicted RBP35.46■■■■□ 3.27
HMGCS1-206ENST00000511774 GRIN2BQ13224 1484 aa35.42■■■■□ 3.26
HMGCS1-206ENST00000511774 SYNJ2O15056 1496 aa35.39■■■■□ 3.26
HMGCS1-206ENST00000511774 PBRM1Q86U86 1689 aa35.32■■■■□ 3.24
HMGCS1-206ENST00000511774 GAPVD1Q14C86 1478 aa35.29■■■■□ 3.24
HMGCS1-206ENST00000511774 AEBP2Q6ZN18 517 aaPredicted RBP35.21■■■■□ 3.23
HMGCS1-206ENST00000511774 ABCA5Q8WWZ7 1642 aa35.17■■■■□ 3.22
HMGCS1-206ENST00000511774 ERCC6L2Q5T890 1561 aa35.17■■■■□ 3.22
HMGCS1-206ENST00000511774 ABCA10Q8WWZ4 1543 aa35.11■■■■□ 3.21
HMGCS1-206ENST00000511774 GRIN2AQ12879 1464 aa35■■■■□ 3.19
HMGCS1-206ENST00000511774 CEP170Q5SW79 1584 aa34.97■■■■□ 3.19
HMGCS1-206ENST00000511774 ADAMTS12P58397 1594 aa34.94■■■■□ 3.18
HMGCS1-206ENST00000511774 NUP160Q12769 1436 aa34.92■■■■□ 3.18
HMGCS1-206ENST00000511774 SHROOM2Q13796 1616 aa34.87■■■■□ 3.17
HMGCS1-206ENST00000511774 KIF13AQ9H1H9 1805 aa34.8■■■■□ 3.16
HMGCS1-206ENST00000511774 WRNQ14191 1432 aaPredicted RBP eCLIP34.79■■■■□ 3.16
HMGCS1-206ENST00000511774 FHAD1B1AJZ9 1412 aa34.73■■■■□ 3.15
HMGCS1-206ENST00000511774 BIVM-ERCC5R4GMW8 1640 aa34.73■■■■□ 3.15
HMGCS1-206ENST00000511774 TOP2BQ02880 1626 aa34.7■■■■□ 3.15
HMGCS1-206ENST00000511774 ERICH3Q5RHP9 1530 aa34.63■■■■□ 3.13
HMGCS1-206ENST00000511774 PRG4Q92954 1404 aaPredicted RBP34.61■■■■□ 3.13
HMGCS1-206ENST00000511774 SUPT5HO00267 1087 aaKnown RBP34.56■■■■□ 3.12
HMGCS1-206ENST00000511774 JPH4Q96JJ6 628 aa34.51■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms