RNA–Protein interactions for RNA: ENST00000492462.1

MDC1-207, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 819 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-207ENST00000492462 CROCC2H7BZ55 1655 aa18.39■□□□□ 0.53
MDC1-207ENST00000492462 TCOF1Q13428 1488 aaKnown RBP18.39■□□□□ 0.53
MDC1-207ENST00000492462 PTPRKQ15262 1439 aa18.37■□□□□ 0.53
MDC1-207ENST00000492462 DNMT1P26358 1616 aaKnown RBP18.36■□□□□ 0.53
MDC1-207ENST00000492462 NPATQ14207 1427 aa18.36■□□□□ 0.53
MDC1-207ENST00000492462 PPP6R1Q9UPN7 881 aa18.36■□□□□ 0.53
MDC1-207ENST00000492462 DAPK1P53355 1430 aa18.35■□□□□ 0.53
MDC1-207ENST00000492462 IQSEC2Q5JU85 1478 aa18.34■□□□□ 0.53
MDC1-207ENST00000492462 SHANK2Q9UPX8 1470 aa18.33■□□□□ 0.53
MDC1-207ENST00000492462 LTBP4Q8N2S1 1624 aa18.33■□□□□ 0.52
MDC1-207ENST00000492462 RNF17Q9BXT8 1623 aaKnown RBP18.33■□□□□ 0.52
MDC1-207ENST00000492462 KDM5DQ9BY66 1539 aa18.33■□□□□ 0.52
MDC1-207ENST00000492462 MROH1Q8NDA8 1641 aa18.31■□□□□ 0.52
MDC1-207ENST00000492462 MYO3AQ8NEV4 1616 aa18.31■□□□□ 0.52
MDC1-207ENST00000492462 EIF2AK4Q9P2K8 1649 aaKnown RBP18.31■□□□□ 0.52
MDC1-207ENST00000492462 FBXO31Q5XUX0 539 aaPredicted RBP18.31■□□□□ 0.52
MDC1-207ENST00000492462 PPARGC1BQ86YN6 1023 aaKnown RBP18.31■□□□□ 0.52
MDC1-207ENST00000492462 RRP7BPQ9NSQ0 103 aa18.31■□□□□ 0.52
MDC1-207ENST00000492462 DUOX2Q9NRD8 1548 aa18.31■□□□□ 0.52
MDC1-207ENST00000492462 KIF15Q9NS87 1388 aa18.3■□□□□ 0.52
MDC1-207ENST00000492462 WASHC2CQ9Y4E1 1318 aa18.3■□□□□ 0.52
MDC1-207ENST00000492462 CHIC2Q9UKJ5 165 aa18.3■□□□□ 0.52
MDC1-207ENST00000492462 FAM50AQ14320 339 aaKnown RBP18.29■□□□□ 0.52
MDC1-207ENST00000492462 FAM135AQ9P2D6 1515 aa18.28■□□□□ 0.52
MDC1-207ENST00000492462 PTPRTO14522 1441 aa18.28■□□□□ 0.52
MDC1-207ENST00000492462 ABCC3O15438 1527 aa18.28■□□□□ 0.52
MDC1-207ENST00000492462 ZNF142P52746 1687 aaPredicted RBP18.28■□□□□ 0.52
MDC1-207ENST00000492462 PZPP20742 1482 aa18.27■□□□□ 0.52
MDC1-207ENST00000492462 MED1Q15648 1581 aaPredicted RBP18.27■□□□□ 0.52
MDC1-207ENST00000492462 CEP170BQ9Y4F5 1589 aaPredicted RBP18.27■□□□□ 0.52
MDC1-207ENST00000492462 CAMSAP1Q5T5Y3 1602 aa18.27■□□□□ 0.51
MDC1-207ENST00000492462 CEP152O94986 1710 aa18.26■□□□□ 0.51
MDC1-207ENST00000492462 NCOA1Q15788 1441 aa18.25■□□□□ 0.51
MDC1-207ENST00000492462 ERBINQ96RT1 1412 aa18.23■□□□□ 0.51
MDC1-207ENST00000492462 ZC3H13Q5T200 1668 aaKnown RBP18.23■□□□□ 0.51
MDC1-207ENST00000492462 TNRQ92752 1358 aa18.23■□□□□ 0.51
MDC1-207ENST00000492462 ANKRD30AQ9BXX3 1397 aa18.23■□□□□ 0.51
MDC1-207ENST00000492462 UBAP1LF5GYI3 381 aa18.23■□□□□ 0.51
MDC1-207ENST00000492462 CFAP65Q6ZU64 1925 aaKnown RBP18.22■□□□□ 0.51
MDC1-207ENST00000492462 A2ML1A8K2U0 1454 aa18.21■□□□□ 0.51
MDC1-207ENST00000492462 NCKAP5LQ9HCH0 1330 aa18.21■□□□□ 0.51
MDC1-207ENST00000492462 ADGRL2O95490 1459 aa18.2■□□□□ 0.5
MDC1-207ENST00000492462 DEPDC5O75140 1603 aa18.2■□□□□ 0.5
MDC1-207ENST00000492462 PRDM15P57071 1507 aaPredicted RBP18.2■□□□□ 0.5
MDC1-207ENST00000492462 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.2■□□□□ 0.5
MDC1-207ENST00000492462 ERVK-7P63135 1459 aa18.16■□□□□ 0.5
MDC1-207ENST00000492462 PLA2R1Q13018 1463 aa18.16■□□□□ 0.5
MDC1-207ENST00000492462 PHF23Q9BUL5 403 aaPredicted RBP18.14■□□□□ 0.49
MDC1-207ENST00000492462 VWDEQ8N2E2 1590 aa18.13■□□□□ 0.49
MDC1-207ENST00000492462 NLRP1Q9C000 1473 aa18.13■□□□□ 0.49
MDC1-207ENST00000492462 HSPA1LP34931 641 aa18.12■□□□□ 0.49
MDC1-207ENST00000492462 ITGAEP38570 1179 aa18.12■□□□□ 0.49
MDC1-207ENST00000492462 ANKRD50Q9ULJ7 1429 aa18.12■□□□□ 0.49
MDC1-207ENST00000492462 PKD2Q13563 968 aa18.11■□□□□ 0.49
MDC1-207ENST00000492462 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.11■□□□□ 0.49
MDC1-207ENST00000492462 ARHGAP31Q2M1Z3 1444 aa18.11■□□□□ 0.49
MDC1-207ENST00000492462 UGGT1Q9NYU2 1555 aa18.1■□□□□ 0.49
MDC1-207ENST00000492462 KANK1Q14678 1352 aa18.1■□□□□ 0.49
MDC1-207ENST00000492462 POLR1AO95602 1720 aaPredicted RBP18.09■□□□□ 0.49
MDC1-207ENST00000492462 NEURL4Q96JN8 1562 aa18.09■□□□□ 0.49
MDC1-207ENST00000492462 LMTK2Q8IWU2 1503 aa18.08■□□□□ 0.49
MDC1-207ENST00000492462 ROCK1Q13464 1354 aa18.06■□□□□ 0.48
MDC1-207ENST00000492462 ZNF335Q9H4Z2 1342 aaPredicted RBP18.06■□□□□ 0.48
MDC1-207ENST00000492462 THEMISQ8N1K5 641 aaPredicted RBP18.06■□□□□ 0.48
MDC1-207ENST00000492462 UBR1Q8IWV7 1749 aa18.06■□□□□ 0.48
MDC1-207ENST00000492462 EFCAB6Q5THR3 1501 aa18.05■□□□□ 0.48
MDC1-207ENST00000492462 RRBP1Q9P2E9 1410 aaKnown RBP18.04■□□□□ 0.48
MDC1-207ENST00000492462 UNC13BO14795 1591 aa18.04■□□□□ 0.48
MDC1-207ENST00000492462 PIK3C2BO00750 1634 aa18.03■□□□□ 0.48
MDC1-207ENST00000492462 ANKLE2Q86XL3 938 aa18.03■□□□□ 0.48
MDC1-207ENST00000492462 SYNMO15061 1565 aa18.03■□□□□ 0.48
MDC1-207ENST00000492462 SCAF1Q9H7N4 1312 aaKnown RBP18.02■□□□□ 0.48
MDC1-207ENST00000492462 TET3O43151 1660 aa18■□□□□ 0.47
MDC1-207ENST00000492462 NOS1P29475 1434 aa18■□□□□ 0.47
MDC1-207ENST00000492462 NPHP4O75161 1426 aaPredicted RBP17.99■□□□□ 0.47
MDC1-207ENST00000492462 PIP4K2BP78356 416 aa17.99■□□□□ 0.47
MDC1-207ENST00000492462 MED14O60244 1454 aa17.99■□□□□ 0.47
MDC1-207ENST00000492462 IDI1Q13907 227 aa17.98■□□□□ 0.47
MDC1-207ENST00000492462 IQGAP1P46940 1657 aa17.97■□□□□ 0.47
MDC1-207ENST00000492462 GCC2Q8IWJ2 1684 aa17.97■□□□□ 0.47
MDC1-207ENST00000492462 ARHGAP23Q9P227 1491 aa17.96■□□□□ 0.47
MDC1-207ENST00000492462 LTKP29376 864 aa17.96■□□□□ 0.47
MDC1-207ENST00000492462 IQGAP3Q86VI3 1631 aa17.96■□□□□ 0.47
MDC1-207ENST00000492462 E9PCH4 1651 aa17.96■□□□□ 0.47
MDC1-207ENST00000492462 SLIT1O75093 1534 aa17.95■□□□□ 0.46
MDC1-207ENST00000492462 RPRD2Q5VT52 1461 aaKnown RBP17.95■□□□□ 0.46
MDC1-207ENST00000492462 SCAF11Q99590 1463 aaKnown RBP17.94■□□□□ 0.46
MDC1-207ENST00000492462 NUP155O75694 1391 aa17.93■□□□□ 0.46
MDC1-207ENST00000492462 TXNDC2Q86VQ3 553 aa17.93■□□□□ 0.46
MDC1-207ENST00000492462 STAG3Q9UJ98 1225 aa17.93■□□□□ 0.46
MDC1-207ENST00000492462 MYO5BQ9ULV0 1848 aa17.92■□□□□ 0.46
MDC1-207ENST00000492462 KDM5AP29375 1690 aaKnown RBP17.92■□□□□ 0.46
MDC1-207ENST00000492462 TMEM2Q9UHN6 1383 aa17.91■□□□□ 0.46
MDC1-207ENST00000492462 STRCP1A6NGW2 1772 aa17.91■□□□□ 0.46
MDC1-207ENST00000492462 ADGRB3O60242 1522 aa17.91■□□□□ 0.46
MDC1-207ENST00000492462 NAIPQ13075 1403 aa17.9■□□□□ 0.46
MDC1-207ENST00000492462 TOM1O60784 492 aa17.9■□□□□ 0.46
MDC1-207ENST00000492462 SLC52A1Q9NWF4 448 aa17.89■□□□□ 0.45
MDC1-207ENST00000492462 RGS17Q9UGC6 210 aaPredicted RBP17.88■□□□□ 0.45
MDC1-207ENST00000492462 EID1Q9Y6B2 187 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms