RNA–Protein interactions for RNA: ENST00000492462.1

MDC1-207, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 819 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-207ENST00000492462 NISCHQ9Y2I1 1504 aa29.11■■■□□ 2.25
MDC1-207ENST00000492462 CCDC180Q9P1Z9 1646 aa25.96■■□□□ 1.75
MDC1-207ENST00000492462 ABCC9O60706 1549 aa25.7■■□□□ 1.7
MDC1-207ENST00000492462 DNAJC5BQ9UF47 199 aa25.15■■□□□ 1.62
MDC1-207ENST00000492462 RB1CC1Q8TDY2 1594 aa24.54■■□□□ 1.52
MDC1-207ENST00000492462 DCAF8L2P0C7V8 631 aa24.45■■□□□ 1.5
MDC1-207ENST00000492462 NACADO15069 1562 aa24.45■■□□□ 1.5
MDC1-207ENST00000492462 ZCCHC6Q5VYS8 1495 aaKnown RBP24.2■■□□□ 1.47
MDC1-207ENST00000492462 MYO15BQ96JP2 1530 aa24.2■■□□□ 1.46
MDC1-207ENST00000492462 UNC13AQ9UPW8 1703 aa24.08■■□□□ 1.45
MDC1-207ENST00000492462 DCAF1Q9Y4B6 1507 aa24.02■■□□□ 1.44
MDC1-207ENST00000492462 PABPN1Q86U42 306 aaKnown RBP eCLIP23.99■■□□□ 1.43
MDC1-207ENST00000492462 DNAJC5Q9H3Z4 198 aa23.94■■□□□ 1.42
MDC1-207ENST00000492462 BICRAQ9NZM4 1560 aa23.89■■□□□ 1.41
MDC1-207ENST00000492462 SCRIBQ14160 1630 aa23.73■■□□□ 1.39
MDC1-207ENST00000492462 SHROOM4Q9ULL8 1493 aa23.47■■□□□ 1.35
MDC1-207ENST00000492462 EIF4G1Q04637 1599 aaKnown RBP23.24■■□□□ 1.31
MDC1-207ENST00000492462 CECR2Q9BXF3 1484 aa23.23■■□□□ 1.31
MDC1-207ENST00000492462 CC2D2AQ9P2K1 1620 aa23.22■■□□□ 1.31
MDC1-207ENST00000492462 SMARCA4P51532 1647 aa22.65■■□□□ 1.22
MDC1-207ENST00000492462 ATAD2BQ9ULI0 1458 aa22.59■■□□□ 1.21
MDC1-207ENST00000492462 NCAPD3P42695 1498 aa22.58■■□□□ 1.2
MDC1-207ENST00000492462 CUX2O14529 1486 aa22.57■■□□□ 1.2
MDC1-207ENST00000492462 BAZ1AQ9NRL2 1556 aaPredicted RBP22.55■■□□□ 1.2
MDC1-207ENST00000492462 SMARCA2P51531 1590 aa22.5■■□□□ 1.19
MDC1-207ENST00000492462 MROH2BQ7Z745 1585 aa22.47■■□□□ 1.19
MDC1-207ENST00000492462 HMGXB3Q12766 1538 aa22.44■■□□□ 1.18
MDC1-207ENST00000492462 TRIM41Q8WV44 630 aa22.41■■□□□ 1.18
MDC1-207ENST00000492462 PEG3Q9GZU2 1588 aa22.4■■□□□ 1.18
MDC1-207ENST00000492462 BAZ1BQ9UIG0 1483 aaKnown RBP22.37■■□□□ 1.17
MDC1-207ENST00000492462 WIZO95785 1651 aa22.23■■□□□ 1.15
MDC1-207ENST00000492462 ERCC6Q03468 1493 aa22.22■■□□□ 1.15
MDC1-207ENST00000492462 NESP48681 1621 aa22.19■■□□□ 1.14
MDC1-207ENST00000492462 RSF1Q96T23 1441 aaPredicted RBP22.11■■□□□ 1.13
MDC1-207ENST00000492462 LAMC3Q9Y6N6 1575 aa22.01■■□□□ 1.11
MDC1-207ENST00000492462 TOP2AP11388 1531 aaKnown RBP21.93■■□□□ 1.1
MDC1-207ENST00000492462 CADPSQ9ULU8 1353 aa21.91■■□□□ 1.1
MDC1-207ENST00000492462 KIF21AQ7Z4S6 1674 aa21.91■■□□□ 1.1
MDC1-207ENST00000492462 THOC2Q8NI27 1593 aaKnown RBP21.87■■□□□ 1.09
MDC1-207ENST00000492462 PDS5BQ9NTI5 1447 aa21.85■■□□□ 1.09
MDC1-207ENST00000492462 CFTRP13569 1480 aa21.73■■□□□ 1.07
MDC1-207ENST00000492462 CCDC88BA6NC98 1476 aa21.71■■□□□ 1.07
MDC1-207ENST00000492462 FANCD2Q9BXW9 1451 aa21.68■■□□□ 1.06
MDC1-207ENST00000492462 MRC2Q9UBG0 1479 aa21.68■■□□□ 1.06
MDC1-207ENST00000492462 CEP164Q9UPV0 1460 aa21.65■■□□□ 1.06
MDC1-207ENST00000492462 WDR62O43379 1518 aa21.62■■□□□ 1.05
MDC1-207ENST00000492462 PRDM2Q13029 1718 aa21.57■■□□□ 1.04
MDC1-207ENST00000492462 URB2Q14146 1524 aaKnown RBP21.51■■□□□ 1.03
MDC1-207ENST00000492462 SUPT5HO00267 1087 aaKnown RBP21.4■■□□□ 1.02
MDC1-207ENST00000492462 AEBP2Q6ZN18 517 aaPredicted RBP21.37■■□□□ 1.01
MDC1-207ENST00000492462 OSCARQ8IYS5 282 aa21.37■■□□□ 1.01
MDC1-207ENST00000492462 TOPBP1Q92547 1522 aa21.32■■□□□ 1
MDC1-207ENST00000492462 DNMBPQ6XZF7 1577 aa21.25■□□□□ 0.99
MDC1-207ENST00000492462 ABCC8Q09428 1581 aa21.22■□□□□ 0.99
MDC1-207ENST00000492462 RIMBP3CA6NJZ7 1639 aa21.22■□□□□ 0.99
MDC1-207ENST00000492462 RIMBP3BA6NNM3 1639 aa21.22■□□□□ 0.99
MDC1-207ENST00000492462 RIMBP3Q9UFD9 1639 aa21.22■□□□□ 0.99
MDC1-207ENST00000492462 ZNF608Q9ULD9 1512 aaPredicted RBP21.2■□□□□ 0.98
MDC1-207ENST00000492462 IFT140Q96RY7 1462 aa21.2■□□□□ 0.98
MDC1-207ENST00000492462 POLA1P09884 1462 aaPredicted RBP21.12■□□□□ 0.97
MDC1-207ENST00000492462 TARBP1Q13395 1621 aaKnown RBP21.11■□□□□ 0.97
MDC1-207ENST00000492462 TRHP20396 242 aaPredicted RBP21.11■□□□□ 0.97
MDC1-207ENST00000492462 CUX1P39880 1505 aa21.09■□□□□ 0.97
MDC1-207ENST00000492462 EIF4G3O43432 1585 aaKnown RBP21.08■□□□□ 0.97
MDC1-207ENST00000492462 RAD54L2Q9Y4B4 1467 aa21.07■□□□□ 0.96
MDC1-207ENST00000492462 FGD5Q6ZNL6 1462 aa21.05■□□□□ 0.96
MDC1-207ENST00000492462 AQRO60306 1485 aaKnown RBP eCLIP21.04■□□□□ 0.96
MDC1-207ENST00000492462 ARHGEF11O15085 1522 aa21.03■□□□□ 0.96
MDC1-207ENST00000492462 SOGA1O94964 1423 aa21.02■□□□□ 0.96
MDC1-207ENST00000492462 CYB5RLQ6IPT4 315 aa20.97■□□□□ 0.95
MDC1-207ENST00000492462 TDRD9Q8NDG6 1382 aaKnown RBP20.96■□□□□ 0.95
MDC1-207ENST00000492462 WDR97A6NE52 1622 aa20.89■□□□□ 0.93
MDC1-207ENST00000492462 CHD1O14646 1710 aa20.88■□□□□ 0.93
MDC1-207ENST00000492462 SYNJ1O43426 1573 aa20.85■□□□□ 0.93
MDC1-207ENST00000492462 WRNQ14191 1432 aaPredicted RBP eCLIP20.83■□□□□ 0.93
MDC1-207ENST00000492462 BIVM-ERCC5R4GMW8 1640 aa20.82■□□□□ 0.92
MDC1-207ENST00000492462 TOP2BQ02880 1626 aa20.82■□□□□ 0.92
MDC1-207ENST00000492462 SNAPC4Q5SXM2 1469 aa20.81■□□□□ 0.92
MDC1-207ENST00000492462 FBLN2P98095 1184 aa20.81■□□□□ 0.92
MDC1-207ENST00000492462 ABCA10Q8WWZ4 1543 aa20.79■□□□□ 0.92
MDC1-207ENST00000492462 GRIN2BQ13224 1484 aa20.78■□□□□ 0.92
MDC1-207ENST00000492462 PBRM1Q86U86 1689 aa20.77■□□□□ 0.91
MDC1-207ENST00000492462 GAPVD1Q14C86 1478 aa20.76■□□□□ 0.91
MDC1-207ENST00000492462 ABCA5Q8WWZ7 1642 aa20.76■□□□□ 0.91
MDC1-207ENST00000492462 MAGI1Q96QZ7 1491 aaPredicted RBP20.74■□□□□ 0.91
MDC1-207ENST00000492462 ARAP1Q96P48 1450 aa20.73■□□□□ 0.91
MDC1-207ENST00000492462 ILDR1Q86SU0 546 aaPredicted RBP20.69■□□□□ 0.9
MDC1-207ENST00000492462 CHMP7Q8WUX9 453 aaPredicted RBP20.68■□□□□ 0.9
MDC1-207ENST00000492462 SYNJ2O15056 1496 aa20.68■□□□□ 0.9
MDC1-207ENST00000492462 CLASP1Q7Z460 1538 aa20.63■□□□□ 0.89
MDC1-207ENST00000492462 ADAMTS12P58397 1594 aa20.58■□□□□ 0.88
MDC1-207ENST00000492462 GRIN2AQ12879 1464 aa20.53■□□□□ 0.88
MDC1-207ENST00000492462 ERICH3Q5RHP9 1530 aa20.53■□□□□ 0.88
MDC1-207ENST00000492462 FHAD1B1AJZ9 1412 aa20.5■□□□□ 0.87
MDC1-207ENST00000492462 CEP170Q5SW79 1584 aa20.47■□□□□ 0.87
MDC1-207ENST00000492462 NUP160Q12769 1436 aa20.44■□□□□ 0.86
MDC1-207ENST00000492462 KIF27Q86VH2 1401 aa20.39■□□□□ 0.85
MDC1-207ENST00000492462 ERCC6L2Q5T890 1561 aa20.38■□□□□ 0.85
MDC1-207ENST00000492462 IGF1RP08069 1367 aa20.37■□□□□ 0.85
MDC1-207ENST00000492462 SHROOM2Q13796 1616 aa20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms