RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 PPP6R1Q9UPN7 881 aa38.27■■■■□ 3.72
UPF3A-209ENST00000492270 NPATQ14207 1427 aa38.25■■■■□ 3.71
UPF3A-209ENST00000492270 FAM135AQ9P2D6 1515 aa38.24■■■■□ 3.71
UPF3A-209ENST00000492270 PPARGC1BQ86YN6 1023 aaKnown RBP38.24■■■■□ 3.71
UPF3A-209ENST00000492270 MROH1Q8NDA8 1641 aa38.23■■■■□ 3.71
UPF3A-209ENST00000492270 KIF15Q9NS87 1388 aa38.22■■■■□ 3.71
UPF3A-209ENST00000492270 PTPRKQ15262 1439 aa38.21■■■■□ 3.71
UPF3A-209ENST00000492270 MYO3AQ8NEV4 1616 aa38.21■■■■□ 3.71
UPF3A-209ENST00000492270 FAM50AQ14320 339 aaKnown RBP38.2■■■■□ 3.71
UPF3A-209ENST00000492270 STRCQ7RTU9 1775 aa38.18■■■■□ 3.7
UPF3A-209ENST00000492270 RRP7BPQ9NSQ0 103 aa38.17■■■■□ 3.7
UPF3A-209ENST00000492270 CHIC2Q9UKJ5 165 aa38.17■■■■□ 3.7
UPF3A-209ENST00000492270 CEP152O94986 1710 aa38.17■■■■□ 3.7
UPF3A-209ENST00000492270 ZC3H13Q5T200 1668 aaKnown RBP38.17■■■■□ 3.7
UPF3A-209ENST00000492270 ZNF142P52746 1687 aaPredicted RBP38.14■■■■□ 3.7
UPF3A-209ENST00000492270 WASHC2CQ9Y4E1 1318 aa38.13■■■■□ 3.7
UPF3A-209ENST00000492270 ERBINQ96RT1 1412 aa38.12■■■■□ 3.69
UPF3A-209ENST00000492270 ABCC3O15438 1527 aa38.12■■■■□ 3.69
UPF3A-209ENST00000492270 ANKRD30AQ9BXX3 1397 aa38.1■■■■□ 3.69
UPF3A-209ENST00000492270 ADGRL2O95490 1459 aa38.09■■■■□ 3.69
UPF3A-209ENST00000492270 PZPP20742 1482 aa38.09■■■■□ 3.69
UPF3A-209ENST00000492270 NCOA1Q15788 1441 aa38.08■■■■□ 3.69
UPF3A-209ENST00000492270 DEPDC5O75140 1603 aa38.08■■■■□ 3.69
UPF3A-209ENST00000492270 PRDM15P57071 1507 aaPredicted RBP38.07■■■■□ 3.68
UPF3A-209ENST00000492270 CEP170BQ9Y4F5 1589 aaPredicted RBP38.06■■■■□ 3.68
UPF3A-209ENST00000492270 CAMSAP1Q5T5Y3 1602 aa38.05■■■■□ 3.68
UPF3A-209ENST00000492270 FBXO31Q5XUX0 539 aaPredicted RBP38.03■■■■□ 3.68
UPF3A-209ENST00000492270 CFAP65Q6ZU64 1925 aaKnown RBP38.01■■■■□ 3.68
UPF3A-209ENST00000492270 TNRQ92752 1358 aa37.96■■■■□ 3.67
UPF3A-209ENST00000492270 A2ML1A8K2U0 1454 aa37.93■■■■□ 3.66
UPF3A-209ENST00000492270 SPATA31D1Q6ZQQ2 1576 aa37.91■■■■□ 3.66
UPF3A-209ENST00000492270 GRWD1Q9BQ67 446 aaKnown RBP eCLIP37.9■■■■□ 3.661e-8■■■■■ 27.4
UPF3A-209ENST00000492270 VWDEQ8N2E2 1590 aa37.89■■■■□ 3.66
UPF3A-209ENST00000492270 ERVK-7P63135 1459 aa37.87■■■■□ 3.65
UPF3A-209ENST00000492270 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP37.86■■■■□ 3.65
UPF3A-209ENST00000492270 ANKRD50Q9ULJ7 1429 aa37.86■■■■□ 3.65
UPF3A-209ENST00000492270 ITGAEP38570 1179 aa37.84■■■■□ 3.65
UPF3A-209ENST00000492270 PLA2R1Q13018 1463 aa37.83■■■■□ 3.65
UPF3A-209ENST00000492270 KANK1Q14678 1352 aa37.82■■■■□ 3.65
UPF3A-209ENST00000492270 RRBP1Q9P2E9 1410 aaKnown RBP37.81■■■■□ 3.64
UPF3A-209ENST00000492270 LMTK2Q8IWU2 1503 aa37.81■■■■□ 3.64
UPF3A-209ENST00000492270 NLRP1Q9C000 1473 aa37.8■■■■□ 3.64
UPF3A-209ENST00000492270 DMRT2Q9Y5R5 561 aa37.8■■■■□ 3.64
UPF3A-209ENST00000492270 ROCK1Q13464 1354 aa37.8■■■■□ 3.64
UPF3A-209ENST00000492270 PTPRTO14522 1441 aa37.79■■■■□ 3.64
UPF3A-209ENST00000492270 ARHGAP31Q2M1Z3 1444 aa37.79■■■■□ 3.64
UPF3A-209ENST00000492270 POLR1AO95602 1720 aaPredicted RBP37.78■■■■□ 3.64
UPF3A-209ENST00000492270 NCKAP5LQ9HCH0 1330 aa37.77■■■■□ 3.64
UPF3A-209ENST00000492270 UNC13BO14795 1591 aa37.76■■■■□ 3.64
UPF3A-209ENST00000492270 UGGT1Q9NYU2 1555 aa37.75■■■■□ 3.63
UPF3A-209ENST00000492270 EFCAB6Q5THR3 1501 aa37.73■■■■□ 3.63
UPF3A-209ENST00000492270 ILDR1Q86SU0 546 aaPredicted RBP37.73■■■■□ 3.63
UPF3A-209ENST00000492270 UBR1Q8IWV7 1749 aa37.7■■■■□ 3.63
UPF3A-209ENST00000492270 TET3O43151 1660 aa37.67■■■■□ 3.62
UPF3A-209ENST00000492270 NEURL4Q96JN8 1562 aa37.67■■■■□ 3.62
UPF3A-209ENST00000492270 GCC2Q8IWJ2 1684 aa37.66■■■■□ 3.62
UPF3A-209ENST00000492270 PKD2Q13563 968 aa37.65■■■■□ 3.62
UPF3A-209ENST00000492270 SYNMO15061 1565 aa37.63■■■■□ 3.61
UPF3A-209ENST00000492270 PIK3C2BO00750 1634 aa37.62■■■■□ 3.61
UPF3A-209ENST00000492270 IQGAP3Q86VI3 1631 aa37.61■■■■□ 3.61
UPF3A-209ENST00000492270 THEMISQ8N1K5 641 aaPredicted RBP37.59■■■■□ 3.61
UPF3A-209ENST00000492270 LTBP4Q8N2S1 1624 aa37.58■■■■□ 3.61
UPF3A-209ENST00000492270 CERKQ8TCT0 537 aa37.57■■■■□ 3.6
UPF3A-209ENST00000492270 E9PCH4 1651 aa37.56■■■■□ 3.6
UPF3A-209ENST00000492270 NOS1P29475 1434 aa37.54■■■■□ 3.6
UPF3A-209ENST00000492270 FBXO41Q8TF61 875 aa37.52■■■■□ 3.6
UPF3A-209ENST00000492270 RPRD2Q5VT52 1461 aaKnown RBP37.52■■■■□ 3.6
UPF3A-209ENST00000492270 ANKLE2Q86XL3 938 aa37.49■■■■□ 3.59
UPF3A-209ENST00000492270 KDM5AP29375 1690 aaKnown RBP37.49■■■■□ 3.59
UPF3A-209ENST00000492270 IQGAP1P46940 1657 aa37.48■■■■□ 3.59
UPF3A-209ENST00000492270 NAIPQ13075 1403 aa37.46■■■■□ 3.59
UPF3A-209ENST00000492270 ZNF335Q9H4Z2 1342 aaPredicted RBP37.46■■■■□ 3.59
UPF3A-209ENST00000492270 MED14O60244 1454 aa37.45■■■■□ 3.59
UPF3A-209ENST00000492270 NUP155O75694 1391 aa37.45■■■■□ 3.59
UPF3A-209ENST00000492270 MYO5BQ9ULV0 1848 aa37.44■■■■□ 3.58
UPF3A-209ENST00000492270 SLIT1O75093 1534 aa37.44■■■■□ 3.58
UPF3A-209ENST00000492270 IDI1Q13907 227 aa37.43■■■■□ 3.58
UPF3A-209ENST00000492270 ARHGAP23Q9P227 1491 aa37.43■■■■□ 3.58
UPF3A-209ENST00000492270 NPHP4O75161 1426 aaPredicted RBP37.43■■■■□ 3.58
UPF3A-209ENST00000492270 ADGRB3O60242 1522 aa37.41■■■■□ 3.58
UPF3A-209ENST00000492270 SCAF11Q99590 1463 aaKnown RBP37.37■■■■□ 3.57
UPF3A-209ENST00000492270 HFM1A2PYH4 1435 aa37.36■■■■□ 3.57
UPF3A-209ENST00000492270 STAG3Q9UJ98 1225 aa37.35■■■■□ 3.57
UPF3A-209ENST00000492270 LTKP29376 864 aa37.32■■■■□ 3.56
UPF3A-209ENST00000492270 SLC52A1Q9NWF4 448 aa37.32■■■■□ 3.56
UPF3A-209ENST00000492270 TMEM2Q9UHN6 1383 aa37.31■■■■□ 3.56
UPF3A-209ENST00000492270 SPHKAPQ2M3C7 1700 aa37.3■■■■□ 3.56
UPF3A-209ENST00000492270 TMEM131LA2VDJ0 1609 aa37.29■■■■□ 3.56
UPF3A-209ENST00000492270 STRCP1A6NGW2 1772 aa37.28■■■■□ 3.56
UPF3A-209ENST00000492270 TXNDC2Q86VQ3 553 aa37.28■■■■□ 3.56
UPF3A-209ENST00000492270 IQSEC2Q5JU85 1478 aa37.27■■■■□ 3.56
UPF3A-209ENST00000492270 EID1Q9Y6B2 187 aa37.22■■■■□ 3.55
UPF3A-209ENST00000492270 CPS1P31327 1500 aa37.2■■■■□ 3.55
UPF3A-209ENST00000492270 ZFYVE9O95405 1425 aa37.14■■■■□ 3.54
UPF3A-209ENST00000492270 TRIM52Q96A61 297 aa37.14■■■■□ 3.54
UPF3A-209ENST00000492270 CHGAP10645 457 aaKnown RBP37.12■■■■□ 3.53
UPF3A-209ENST00000492270 RIMS2Q9UQ26 1411 aa37.1■■■■□ 3.53
UPF3A-209ENST00000492270 CLTCL1P53675 1640 aa37.1■■■■□ 3.53
UPF3A-209ENST00000492270 TRPM2O94759 1503 aa37.08■■■■□ 3.53
UPF3A-209ENST00000492270 SENP3Q9H4L4 574 aaPredicted RBP37.03■■■■□ 3.52
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms