RNA–Protein interactions for RNA: ENST00000491330.1

PDLIM2-217, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-217ENST00000491330 RRP7BPQ9NSQ0 103 aa25.54■■□□□ 1.68
PDLIM2-217ENST00000491330 TNRQ92752 1358 aa25.54■■□□□ 1.68
PDLIM2-217ENST00000491330 FGD6Q6ZV73 1430 aa25.54■■□□□ 1.68
PDLIM2-217ENST00000491330 FAM50AQ14320 339 aaKnown RBP25.52■■□□□ 1.68
PDLIM2-217ENST00000491330 NCOA1Q15788 1441 aa25.52■■□□□ 1.68
PDLIM2-217ENST00000491330 ANKRD30AQ9BXX3 1397 aa25.51■■□□□ 1.67
PDLIM2-217ENST00000491330 KIF15Q9NS87 1388 aa25.51■■□□□ 1.67
PDLIM2-217ENST00000491330 DUOX2Q9NRD8 1548 aa25.51■■□□□ 1.67
PDLIM2-217ENST00000491330 THEMISQ8N1K5 641 aaPredicted RBP25.5■■□□□ 1.67
PDLIM2-217ENST00000491330 PTPN23Q9H3S7 1636 aa25.5■■□□□ 1.67
PDLIM2-217ENST00000491330 SHANK2Q9UPX8 1470 aa25.5■■□□□ 1.67
PDLIM2-217ENST00000491330 PZPP20742 1482 aa25.49■■□□□ 1.67
PDLIM2-217ENST00000491330 KANK1Q14678 1352 aa25.49■■□□□ 1.67
PDLIM2-217ENST00000491330 FBXO31Q5XUX0 539 aaPredicted RBP25.49■■□□□ 1.67
PDLIM2-217ENST00000491330 CAMSAP1Q5T5Y3 1602 aa25.48■■□□□ 1.67
PDLIM2-217ENST00000491330 ABCC5O15440 1437 aa25.47■■□□□ 1.67
PDLIM2-217ENST00000491330 DAPK1P53355 1430 aa25.47■■□□□ 1.67
PDLIM2-217ENST00000491330 NCKAP5LQ9HCH0 1330 aa25.47■■□□□ 1.67
PDLIM2-217ENST00000491330 CHIC2Q9UKJ5 165 aa25.47■■□□□ 1.67
PDLIM2-217ENST00000491330 A2ML1A8K2U0 1454 aa25.47■■□□□ 1.67
PDLIM2-217ENST00000491330 PLA2R1Q13018 1463 aa25.46■■□□□ 1.67
PDLIM2-217ENST00000491330 TCOF1Q13428 1488 aaKnown RBP25.46■■□□□ 1.67
PDLIM2-217ENST00000491330 ERBINQ96RT1 1412 aa25.45■■□□□ 1.66
PDLIM2-217ENST00000491330 CEP170BQ9Y4F5 1589 aaPredicted RBP25.44■■□□□ 1.66
PDLIM2-217ENST00000491330 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.44■■□□□ 1.66
PDLIM2-217ENST00000491330 EIF2AK4Q9P2K8 1649 aaKnown RBP25.44■■□□□ 1.66
PDLIM2-217ENST00000491330 ANKLE2Q86XL3 938 aa25.43■■□□□ 1.66
PDLIM2-217ENST00000491330 MYO3AQ8NEV4 1616 aa25.42■■□□□ 1.66
PDLIM2-217ENST00000491330 STRCQ7RTU9 1775 aa25.42■■□□□ 1.66
PDLIM2-217ENST00000491330 NLRP1Q9C000 1473 aa25.41■■□□□ 1.66
PDLIM2-217ENST00000491330 DNMT1P26358 1616 aaKnown RBP25.37■■□□□ 1.65
PDLIM2-217ENST00000491330 RNF17Q9BXT8 1623 aaKnown RBP25.37■■□□□ 1.65
PDLIM2-217ENST00000491330 ZNF142P52746 1687 aaPredicted RBP25.37■■□□□ 1.65
PDLIM2-217ENST00000491330 ZC3H13Q5T200 1668 aaKnown RBP25.36■■□□□ 1.65
PDLIM2-217ENST00000491330 ABCC3O15438 1527 aa25.36■■□□□ 1.65
PDLIM2-217ENST00000491330 STAG3Q9UJ98 1225 aa25.33■■□□□ 1.65
PDLIM2-217ENST00000491330 CROCC2H7BZ55 1655 aa25.31■■□□□ 1.64
PDLIM2-217ENST00000491330 UGGT1Q9NYU2 1555 aa25.31■■□□□ 1.64
PDLIM2-217ENST00000491330 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.31■■□□□ 1.64
PDLIM2-217ENST00000491330 ARHGAP31Q2M1Z3 1444 aa25.29■■□□□ 1.64
PDLIM2-217ENST00000491330 ERVK-7P63135 1459 aa25.28■■□□□ 1.64
PDLIM2-217ENST00000491330 ZNF335Q9H4Z2 1342 aaPredicted RBP25.27■■□□□ 1.64
PDLIM2-217ENST00000491330 IQSEC2Q5JU85 1478 aa25.27■■□□□ 1.64
PDLIM2-217ENST00000491330 EID1Q9Y6B2 187 aa25.26■■□□□ 1.63
PDLIM2-217ENST00000491330 ANKRD50Q9ULJ7 1429 aa25.25■■□□□ 1.63
PDLIM2-217ENST00000491330 ADGRL2O95490 1459 aa25.25■■□□□ 1.63
PDLIM2-217ENST00000491330 PRDM15P57071 1507 aaPredicted RBP25.25■■□□□ 1.63
PDLIM2-217ENST00000491330 SPATA31D1Q6ZQQ2 1576 aa25.24■■□□□ 1.63
PDLIM2-217ENST00000491330 ITGAEP38570 1179 aa25.21■■□□□ 1.63
PDLIM2-217ENST00000491330 MROH1Q8NDA8 1641 aa25.2■■□□□ 1.62
PDLIM2-217ENST00000491330 PPARGC1BQ86YN6 1023 aaKnown RBP25.2■■□□□ 1.62
PDLIM2-217ENST00000491330 NPHP4O75161 1426 aaPredicted RBP25.19■■□□□ 1.62
PDLIM2-217ENST00000491330 LTBP4Q8N2S1 1624 aa25.19■■□□□ 1.62
PDLIM2-217ENST00000491330 UBAP1LF5GYI3 381 aa25.18■■□□□ 1.62
PDLIM2-217ENST00000491330 SLC52A1Q9NWF4 448 aa25.18■■□□□ 1.62
PDLIM2-217ENST00000491330 ROCK1Q13464 1354 aa25.18■■□□□ 1.62
PDLIM2-217ENST00000491330 TXNDC2Q86VQ3 553 aa25.17■■□□□ 1.62
PDLIM2-217ENST00000491330 CEP152O94986 1710 aa25.15■■□□□ 1.62
PDLIM2-217ENST00000491330 HDGFP51858 240 aaKnown RBP25.15■■□□□ 1.62
PDLIM2-217ENST00000491330 LMTK2Q8IWU2 1503 aa25.15■■□□□ 1.62
PDLIM2-217ENST00000491330 DEPDC5O75140 1603 aa25.14■■□□□ 1.61
PDLIM2-217ENST00000491330 TOM1O60784 492 aa25.13■■□□□ 1.61
PDLIM2-217ENST00000491330 MED14O60244 1454 aa25.13■■□□□ 1.61
PDLIM2-217ENST00000491330 IDI1Q13907 227 aa25.11■■□□□ 1.61
PDLIM2-217ENST00000491330 POLR1AO95602 1720 aaPredicted RBP25.11■■□□□ 1.61
PDLIM2-217ENST00000491330 CPS1P31327 1500 aa25.11■■□□□ 1.61
PDLIM2-217ENST00000491330 RPRD2Q5VT52 1461 aaKnown RBP25.09■■□□□ 1.61
PDLIM2-217ENST00000491330 BCANQ96GW7 911 aa25.08■■□□□ 1.61
PDLIM2-217ENST00000491330 SCAF11Q99590 1463 aaKnown RBP25.08■■□□□ 1.6
PDLIM2-217ENST00000491330 SCAF1Q9H7N4 1312 aaKnown RBP25.06■■□□□ 1.6
PDLIM2-217ENST00000491330 TMEM2Q9UHN6 1383 aa25.05■■□□□ 1.6
PDLIM2-217ENST00000491330 VWDEQ8N2E2 1590 aa25.05■■□□□ 1.6
PDLIM2-217ENST00000491330 NEURL4Q96JN8 1562 aa25.05■■□□□ 1.6
PDLIM2-217ENST00000491330 EFCAB6Q5THR3 1501 aa25.04■■□□□ 1.6
PDLIM2-217ENST00000491330 NUP155O75694 1391 aa25.04■■□□□ 1.6
PDLIM2-217ENST00000491330 CFAP65Q6ZU64 1925 aaKnown RBP25.04■■□□□ 1.6
PDLIM2-217ENST00000491330 LTKP29376 864 aa25.02■■□□□ 1.6
PDLIM2-217ENST00000491330 NOS1P29475 1434 aa25.02■■□□□ 1.6
PDLIM2-217ENST00000491330 SLIT1O75093 1534 aa25.02■■□□□ 1.6
PDLIM2-217ENST00000491330 PPP1R15AO75807 674 aaPredicted RBP25.01■■□□□ 1.59
PDLIM2-217ENST00000491330 CHGAP10645 457 aaKnown RBP25.01■■□□□ 1.59
PDLIM2-217ENST00000491330 IQGAP1P46940 1657 aa25.01■■□□□ 1.59
PDLIM2-217ENST00000491330 ARHGAP23Q9P227 1491 aa25■■□□□ 1.59
PDLIM2-217ENST00000491330 UBR1Q8IWV7 1749 aa25■■□□□ 1.59
PDLIM2-217ENST00000491330 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.98■■□□□ 1.59
PDLIM2-217ENST00000491330 PIP4K2BP78356 416 aa24.97■■□□□ 1.59
PDLIM2-217ENST00000491330 PIK3C2BO00750 1634 aa24.95■■□□□ 1.58
PDLIM2-217ENST00000491330 TET3O43151 1660 aa24.94■■□□□ 1.58
PDLIM2-217ENST00000491330 RRBP1Q9P2E9 1410 aaKnown RBP24.94■■□□□ 1.58
PDLIM2-217ENST00000491330 KDM5AP29375 1690 aaKnown RBP24.93■■□□□ 1.58
PDLIM2-217ENST00000491330 UNC13BO14795 1591 aa24.92■■□□□ 1.58
PDLIM2-217ENST00000491330 ADGRB3O60242 1522 aa24.9■■□□□ 1.58
PDLIM2-217ENST00000491330 SYNMO15061 1565 aa24.89■■□□□ 1.58
PDLIM2-217ENST00000491330 KCNA6P17658 529 aa24.89■■□□□ 1.58
PDLIM2-217ENST00000491330 SLC26A8Q96RN1 970 aa24.89■■□□□ 1.58
PDLIM2-217ENST00000491330 DISP3Q9P2K9 1392 aa24.89■■□□□ 1.57
PDLIM2-217ENST00000491330 TRIM52Q96A61 297 aa24.88■■□□□ 1.57
PDLIM2-217ENST00000491330 GCC2Q8IWJ2 1684 aa24.86■■□□□ 1.57
PDLIM2-217ENST00000491330 PROSER2Q86WR7 435 aaPredicted RBP24.85■■□□□ 1.57
PDLIM2-217ENST00000491330 RIMS2Q9UQ26 1411 aa24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms