RNA–Protein interactions for RNA: ENST00000491330.1

PDLIM2-217, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-217ENST00000491330 NISCHQ9Y2I1 1504 aa40.37■■■■■ 4.05
PDLIM2-217ENST00000491330 CCDC180Q9P1Z9 1646 aa36.03■■■■□ 3.36
PDLIM2-217ENST00000491330 ABCC9O60706 1549 aa35.79■■■■□ 3.32
PDLIM2-217ENST00000491330 RB1CC1Q8TDY2 1594 aa34.27■■■■□ 3.08
PDLIM2-217ENST00000491330 DCAF8L2P0C7V8 631 aa34.25■■■■□ 3.07
PDLIM2-217ENST00000491330 NACADO15069 1562 aa34.11■■■■□ 3.05
PDLIM2-217ENST00000491330 MYO15BQ96JP2 1530 aa33.74■■■□□ 2.99
PDLIM2-217ENST00000491330 ZCCHC6Q5VYS8 1495 aaKnown RBP33.49■■■□□ 2.95
PDLIM2-217ENST00000491330 PABPN1Q86U42 306 aaKnown RBP eCLIP33.44■■■□□ 2.94
PDLIM2-217ENST00000491330 DCAF1Q9Y4B6 1507 aa33.4■■■□□ 2.94
PDLIM2-217ENST00000491330 DNAJC5BQ9UF47 199 aa33.17■■■□□ 2.9
PDLIM2-217ENST00000491330 UNC13AQ9UPW8 1703 aa33.11■■■□□ 2.89
PDLIM2-217ENST00000491330 BICRAQ9NZM4 1560 aa33■■■□□ 2.87
PDLIM2-217ENST00000491330 SHROOM4Q9ULL8 1493 aa32.89■■■□□ 2.86
PDLIM2-217ENST00000491330 SCRIBQ14160 1630 aa32.85■■■□□ 2.85
PDLIM2-217ENST00000491330 EIF4G1Q04637 1599 aaKnown RBP32.31■■■□□ 2.76
PDLIM2-217ENST00000491330 CC2D2AQ9P2K1 1620 aa32.26■■■□□ 2.76
PDLIM2-217ENST00000491330 CECR2Q9BXF3 1484 aa32.26■■■□□ 2.75
PDLIM2-217ENST00000491330 NCAPD3P42695 1498 aa31.47■■■□□ 2.63
PDLIM2-217ENST00000491330 SMARCA2P51531 1590 aa31.39■■■□□ 2.62
PDLIM2-217ENST00000491330 BAZ1AQ9NRL2 1556 aaPredicted RBP31.39■■■□□ 2.62
PDLIM2-217ENST00000491330 ATAD2BQ9ULI0 1458 aa31.39■■■□□ 2.62
PDLIM2-217ENST00000491330 SMARCA4P51532 1647 aa31.36■■■□□ 2.61
PDLIM2-217ENST00000491330 HMGXB3Q12766 1538 aa31.23■■■□□ 2.59
PDLIM2-217ENST00000491330 BAZ1BQ9UIG0 1483 aaKnown RBP31.18■■■□□ 2.58
PDLIM2-217ENST00000491330 PEG3Q9GZU2 1588 aa31.06■■■□□ 2.56
PDLIM2-217ENST00000491330 ERCC6Q03468 1493 aa31.04■■■□□ 2.56
PDLIM2-217ENST00000491330 MROH2BQ7Z745 1585 aa31.04■■■□□ 2.56
PDLIM2-217ENST00000491330 CUX2O14529 1486 aa30.79■■■□□ 2.52
PDLIM2-217ENST00000491330 NESP48681 1621 aa30.74■■■□□ 2.51
PDLIM2-217ENST00000491330 LAMC3Q9Y6N6 1575 aa30.71■■■□□ 2.51
PDLIM2-217ENST00000491330 PDS5BQ9NTI5 1447 aa30.67■■■□□ 2.5
PDLIM2-217ENST00000491330 WIZO95785 1651 aa30.64■■■□□ 2.5
PDLIM2-217ENST00000491330 RSF1Q96T23 1441 aaPredicted RBP30.6■■■□□ 2.49
PDLIM2-217ENST00000491330 CADPSQ9ULU8 1353 aa30.6■■■□□ 2.49
PDLIM2-217ENST00000491330 DNAJC5Q9H3Z4 198 aa30.43■■■□□ 2.46
PDLIM2-217ENST00000491330 TOP2AP11388 1531 aaKnown RBP30.39■■■□□ 2.46
PDLIM2-217ENST00000491330 THOC2Q8NI27 1593 aaKnown RBP30.3■■■□□ 2.44
PDLIM2-217ENST00000491330 KIF21AQ7Z4S6 1674 aa30.27■■■□□ 2.44
PDLIM2-217ENST00000491330 MRC2Q9UBG0 1479 aa30.25■■■□□ 2.43
PDLIM2-217ENST00000491330 CFTRP13569 1480 aa30.25■■■□□ 2.43
PDLIM2-217ENST00000491330 CEP164Q9UPV0 1460 aa30.24■■■□□ 2.43
PDLIM2-217ENST00000491330 FANCD2Q9BXW9 1451 aa30.2■■■□□ 2.43
PDLIM2-217ENST00000491330 WDR62O43379 1518 aa30.07■■■□□ 2.4
PDLIM2-217ENST00000491330 CCDC88BA6NC98 1476 aa30.05■■■□□ 2.4
PDLIM2-217ENST00000491330 URB2Q14146 1524 aaKnown RBP29.81■■■□□ 2.36
PDLIM2-217ENST00000491330 ABCC8Q09428 1581 aa29.77■■■□□ 2.36
PDLIM2-217ENST00000491330 PRDM2Q13029 1718 aa29.76■■■□□ 2.36
PDLIM2-217ENST00000491330 SUPT5HO00267 1087 aaKnown RBP29.71■■■□□ 2.35
PDLIM2-217ENST00000491330 IFT140Q96RY7 1462 aa29.64■■■□□ 2.34
PDLIM2-217ENST00000491330 TOPBP1Q92547 1522 aa29.61■■■□□ 2.33
PDLIM2-217ENST00000491330 OSCARQ8IYS5 282 aa29.61■■■□□ 2.33
PDLIM2-217ENST00000491330 DNMBPQ6XZF7 1577 aa29.54■■■□□ 2.32
PDLIM2-217ENST00000491330 ZNF608Q9ULD9 1512 aaPredicted RBP29.4■■■□□ 2.3
PDLIM2-217ENST00000491330 SOGA1O94964 1423 aa29.33■■■□□ 2.29
PDLIM2-217ENST00000491330 POLA1P09884 1462 aaPredicted RBP29.32■■■□□ 2.28
PDLIM2-217ENST00000491330 TRIM41Q8WV44 630 aa29.31■■■□□ 2.28
PDLIM2-217ENST00000491330 AQRO60306 1485 aaKnown RBP eCLIP29.25■■■□□ 2.27
PDLIM2-217ENST00000491330 FBLN2P98095 1184 aa29.24■■■□□ 2.27
PDLIM2-217ENST00000491330 EIF4G3O43432 1585 aaKnown RBP29.23■■■□□ 2.27
PDLIM2-217ENST00000491330 TARBP1Q13395 1621 aaKnown RBP29.21■■■□□ 2.27
PDLIM2-217ENST00000491330 FGD5Q6ZNL6 1462 aa29.21■■■□□ 2.27
PDLIM2-217ENST00000491330 RAD54L2Q9Y4B4 1467 aa29.19■■■□□ 2.26
PDLIM2-217ENST00000491330 TDRD9Q8NDG6 1382 aaKnown RBP29.19■■■□□ 2.26
PDLIM2-217ENST00000491330 CUX1P39880 1505 aa29.15■■■□□ 2.26
PDLIM2-217ENST00000491330 WDR97A6NE52 1622 aa29.1■■■□□ 2.25
PDLIM2-217ENST00000491330 CHMP7Q8WUX9 453 aaPredicted RBP29.09■■■□□ 2.25
PDLIM2-217ENST00000491330 GRIN2BQ13224 1484 aa29.02■■■□□ 2.24
PDLIM2-217ENST00000491330 WRNQ14191 1432 aaPredicted RBP eCLIP29■■■□□ 2.23
PDLIM2-217ENST00000491330 MAGI1Q96QZ7 1491 aaPredicted RBP28.97■■■□□ 2.23
PDLIM2-217ENST00000491330 SNAPC4Q5SXM2 1469 aa28.96■■■□□ 2.23
PDLIM2-217ENST00000491330 GAPVD1Q14C86 1478 aa28.94■■■□□ 2.22
PDLIM2-217ENST00000491330 ABCA10Q8WWZ4 1543 aa28.91■■■□□ 2.22
PDLIM2-217ENST00000491330 CHD1O14646 1710 aa28.88■■■□□ 2.21
PDLIM2-217ENST00000491330 ARHGEF11O15085 1522 aa28.88■■■□□ 2.21
PDLIM2-217ENST00000491330 SYNJ2O15056 1496 aa28.86■■■□□ 2.21
PDLIM2-217ENST00000491330 RIMBP3CA6NJZ7 1639 aa28.86■■■□□ 2.21
PDLIM2-217ENST00000491330 RIMBP3BA6NNM3 1639 aa28.86■■■□□ 2.21
PDLIM2-217ENST00000491330 RIMBP3Q9UFD9 1639 aa28.86■■■□□ 2.21
PDLIM2-217ENST00000491330 CYB5RLQ6IPT4 315 aa28.83■■■□□ 2.21
PDLIM2-217ENST00000491330 TOP2BQ02880 1626 aa28.81■■■□□ 2.2
PDLIM2-217ENST00000491330 SYNJ1O43426 1573 aa28.81■■■□□ 2.2
PDLIM2-217ENST00000491330 BIVM-ERCC5R4GMW8 1640 aa28.75■■■□□ 2.19
PDLIM2-217ENST00000491330 ABCA5Q8WWZ7 1642 aa28.71■■■□□ 2.19
PDLIM2-217ENST00000491330 PBRM1Q86U86 1689 aa28.7■■■□□ 2.18
PDLIM2-217ENST00000491330 FHAD1B1AJZ9 1412 aa28.62■■■□□ 2.17
PDLIM2-217ENST00000491330 CLASP1Q7Z460 1538 aa28.62■■■□□ 2.17
PDLIM2-217ENST00000491330 ERICH3Q5RHP9 1530 aa28.59■■■□□ 2.17
PDLIM2-217ENST00000491330 GRIN2AQ12879 1464 aa28.58■■■□□ 2.17
PDLIM2-217ENST00000491330 ARAP1Q96P48 1450 aa28.57■■■□□ 2.16
PDLIM2-217ENST00000491330 TRHP20396 242 aaPredicted RBP28.53■■■□□ 2.16
PDLIM2-217ENST00000491330 ADAMTS12P58397 1594 aa28.5■■■□□ 2.15
PDLIM2-217ENST00000491330 KIF27Q86VH2 1401 aa28.47■■■□□ 2.15
PDLIM2-217ENST00000491330 NUP160Q12769 1436 aa28.44■■■□□ 2.14
PDLIM2-217ENST00000491330 CEP170Q5SW79 1584 aa28.33■■■□□ 2.13
PDLIM2-217ENST00000491330 JPH4Q96JJ6 628 aa28.33■■■□□ 2.13
PDLIM2-217ENST00000491330 IGF1RP08069 1367 aa28.31■■■□□ 2.12
PDLIM2-217ENST00000491330 PRG4Q92954 1404 aaPredicted RBP28.24■■■□□ 2.11
PDLIM2-217ENST00000491330 CARMIL1Q5VZK9 1371 aa28.21■■■□□ 2.11
PDLIM2-217ENST00000491330 CUL7Q14999 1698 aa28.2■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms