RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 A2MP01023 1474 aa13.44□□□□□ -0.26
USP39-216ENST00000490193 TCOF1Q13428 1488 aaKnown RBP13.44□□□□□ -0.26
USP39-216ENST00000490193 CAPN15O75808 1086 aa13.43□□□□□ -0.26
USP39-216ENST00000490193 PTPRKQ15262 1439 aa13.43□□□□□ -0.26
USP39-216ENST00000490193 SPINK5Q9NQ38 1064 aaPredicted RBP13.43□□□□□ -0.26
USP39-216ENST00000490193 HNRNPMP52272 730 aaKnown RBP eCLIP13.41□□□□□ -0.26
USP39-216ENST00000490193 PKD2Q13563 968 aa13.41□□□□□ -0.26
USP39-216ENST00000490193 ZNF777Q9ULD5 760 aaPredicted RBP13.41□□□□□ -0.26
USP39-216ENST00000490193 CCNB3Q8WWL7 1395 aa13.39□□□□□ -0.27
USP39-216ENST00000490193 ZNF335Q9H4Z2 1342 aaPredicted RBP13.39□□□□□ -0.27
USP39-216ENST00000490193 NCKAP5LQ9HCH0 1330 aa13.39□□□□□ -0.27
USP39-216ENST00000490193 TIAM1Q13009 1591 aa13.38□□□□□ -0.27
USP39-216ENST00000490193 CFDP1Q9UEE9 299 aaPredicted RBP13.38□□□□□ -0.27
USP39-216ENST00000490193 DNMT1P26358 1616 aaKnown RBP13.38□□□□□ -0.27
USP39-216ENST00000490193 POLR1AO95602 1720 aaPredicted RBP13.37□□□□□ -0.27
USP39-216ENST00000490193 FAM135AQ9P2D6 1515 aa13.37□□□□□ -0.27
USP39-216ENST00000490193 RTEL1-TNFRSF6BF6WH68 1400 aa13.37□□□□□ -0.27
USP39-216ENST00000490193 A2ML1A8K2U0 1454 aa13.36□□□□□ -0.27
USP39-216ENST00000490193 MBD5Q9P267 1494 aa13.36□□□□□ -0.27
USP39-216ENST00000490193 MTUS2Q5JR59 1369 aa13.35□□□□□ -0.27
USP39-216ENST00000490193 EHBP1L1Q8N3D4 1523 aa13.35□□□□□ -0.27
USP39-216ENST00000490193 MED1Q15648 1581 aaPredicted RBP13.34□□□□□ -0.27
USP39-216ENST00000490193 GGT6Q6P531 493 aa13.34□□□□□ -0.27
USP39-216ENST00000490193 NEURL4Q96JN8 1562 aa13.33□□□□□ -0.28
USP39-216ENST00000490193 UBAP1LF5GYI3 381 aa13.33□□□□□ -0.28
USP39-216ENST00000490193 DHX29Q7Z478 1369 aaKnown RBP13.32□□□□□ -0.28
USP39-216ENST00000490193 CEP162Q5TB80 1403 aa13.32□□□□□ -0.28
USP39-216ENST00000490193 KDM5DQ9BY66 1539 aa13.32□□□□□ -0.28
USP39-216ENST00000490193 PZPP20742 1482 aa13.31□□□□□ -0.28
USP39-216ENST00000490193 CPS1P31327 1500 aa13.31□□□□□ -0.28
USP39-216ENST00000490193 ZNF644Q9H582 1327 aaPredicted RBP13.3□□□□□ -0.28
USP39-216ENST00000490193 TNRQ92752 1358 aa13.29□□□□□ -0.28
USP39-216ENST00000490193 CCDC141Q6ZP82 1450 aa13.29□□□□□ -0.28
USP39-216ENST00000490193 SHANK2Q9UPX8 1470 aa13.28□□□□□ -0.28
USP39-216ENST00000490193 DEPDC5O75140 1603 aa13.28□□□□□ -0.28
USP39-216ENST00000490193 VWDEQ8N2E2 1590 aa13.27□□□□□ -0.29
USP39-216ENST00000490193 MED14O60244 1454 aa13.26□□□□□ -0.29
USP39-216ENST00000490193 CAMSAP2Q08AD1 1489 aa13.26□□□□□ -0.29
USP39-216ENST00000490193 ARHGEF5Q12774 1597 aa13.26□□□□□ -0.29
USP39-216ENST00000490193 NLRP1Q9C000 1473 aa13.26□□□□□ -0.29
USP39-216ENST00000490193 RSPH4AQ5TD94 716 aa13.25□□□□□ -0.29
USP39-216ENST00000490193 RNF17Q9BXT8 1623 aaKnown RBP13.24□□□□□ -0.29
USP39-216ENST00000490193 NCOA2Q15596 1464 aa13.24□□□□□ -0.29
USP39-216ENST00000490193 KIF3BO15066 747 aa13.24□□□□□ -0.29
USP39-216ENST00000490193 ZC3H13Q5T200 1668 aaKnown RBP13.24□□□□□ -0.29
USP39-216ENST00000490193 ALKQ9UM73 1620 aa13.24□□□□□ -0.29
USP39-216ENST00000490193 UGGT1Q9NYU2 1555 aa13.24□□□□□ -0.29
USP39-216ENST00000490193 MIA2Q96PC5 1412 aa13.23□□□□□ -0.29
USP39-216ENST00000490193 FBXO31Q5XUX0 539 aaPredicted RBP13.23□□□□□ -0.29
USP39-216ENST00000490193 IQGAP1P46940 1657 aa13.22□□□□□ -0.29
USP39-216ENST00000490193 TOM1O60784 492 aa13.22□□□□□ -0.29
USP39-216ENST00000490193 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.21□□□□□ -0.29
USP39-216ENST00000490193 WASHC2CQ9Y4E1 1318 aa13.21□□□□□ -0.29
USP39-216ENST00000490193 MAST1Q9Y2H9 1570 aa13.21□□□□□ -0.29
USP39-216ENST00000490193 HSPA1LP34931 641 aa13.21□□□□□ -0.29
USP39-216ENST00000490193 APLP2Q06481 763 aa13.21□□□□□ -0.29
USP39-216ENST00000490193 ANKLE2Q86XL3 938 aa13.21□□□□□ -0.29
USP39-216ENST00000490193 THEMISQ8N1K5 641 aaPredicted RBP13.21□□□□□ -0.29
USP39-216ENST00000490193 NPHP4O75161 1426 aaPredicted RBP13.21□□□□□ -0.3
USP39-216ENST00000490193 EIF2AK4Q9P2K8 1649 aaKnown RBP13.21□□□□□ -0.3
USP39-216ENST00000490193 SYNMO15061 1565 aa13.2□□□□□ -0.3
USP39-216ENST00000490193 STRCP1A6NGW2 1772 aa13.2□□□□□ -0.3
USP39-216ENST00000490193 ABCC3O15438 1527 aa13.19□□□□□ -0.3
USP39-216ENST00000490193 MROH1Q8NDA8 1641 aa13.17□□□□□ -0.3
USP39-216ENST00000490193 PIP4K2BP78356 416 aa13.17□□□□□ -0.3
USP39-216ENST00000490193 ERVK-7P63135 1459 aa13.16□□□□□ -0.3
USP39-216ENST00000490193 UBR1Q8IWV7 1749 aa13.16□□□□□ -0.3
USP39-216ENST00000490193 LRRC7Q96NW7 1537 aa13.15□□□□□ -0.3
USP39-216ENST00000490193 SLC4A2P04920 1241 aa13.15□□□□□ -0.3
USP39-216ENST00000490193 TSPY4P0CV99 314 aa13.15□□□□□ -0.3
USP39-216ENST00000490193 TSPY10P0CW01 314 aa13.15□□□□□ -0.3
USP39-216ENST00000490193 ZNF219Q9P2Y4 722 aaPredicted RBP13.15□□□□□ -0.3
USP39-216ENST00000490193 CEP152O94986 1710 aa13.14□□□□□ -0.31
USP39-216ENST00000490193 LRRC9Q6ZRR7 1453 aa13.13□□□□□ -0.31
USP39-216ENST00000490193 SLIT1O75093 1534 aa13.12□□□□□ -0.31
USP39-216ENST00000490193 ARHGAP23Q9P227 1491 aa13.11□□□□□ -0.31
USP39-216ENST00000490193 PRDM15P57071 1507 aaPredicted RBP13.11□□□□□ -0.31
USP39-216ENST00000490193 MAP3K1Q13233 1512 aa13.11□□□□□ -0.31
USP39-216ENST00000490193 DUOX2Q9NRD8 1548 aa13.11□□□□□ -0.31
USP39-216ENST00000490193 XIRP1Q702N8 1843 aaKnown RBP13.11□□□□□ -0.31
USP39-216ENST00000490193 SCAF11Q99590 1463 aaKnown RBP13.1□□□□□ -0.31
USP39-216ENST00000490193 ARHGAP31Q2M1Z3 1444 aa13.1□□□□□ -0.31
USP39-216ENST00000490193 CFAP65Q6ZU64 1925 aaKnown RBP13.09□□□□□ -0.31
USP39-216ENST00000490193 VPS8Q8N3P4 1428 aa13.09□□□□□ -0.31
USP39-216ENST00000490193 KDM5AP29375 1690 aaKnown RBP13.08□□□□□ -0.31
USP39-216ENST00000490193 CROCC2H7BZ55 1655 aa13.08□□□□□ -0.32
USP39-216ENST00000490193 MYOM3Q5VTT5 1437 aa13.07□□□□□ -0.32
USP39-216ENST00000490193 ERBINQ96RT1 1412 aa13.05□□□□□ -0.32
USP39-216ENST00000490193 PIK3C2BO00750 1634 aa13.05□□□□□ -0.32
USP39-216ENST00000490193 ABCB7O75027 752 aa13.04□□□□□ -0.32
USP39-216ENST00000490193 LTKP29376 864 aa13.03□□□□□ -0.32
USP39-216ENST00000490193 KIF15Q9NS87 1388 aa13.02□□□□□ -0.33
USP39-216ENST00000490193 LMTK2Q8IWU2 1503 aa13.02□□□□□ -0.33
USP39-216ENST00000490193 TXNDC2Q86VQ3 553 aa13.01□□□□□ -0.33
USP39-216ENST00000490193 RGS17Q9UGC6 210 aaPredicted RBP13.01□□□□□ -0.33
USP39-216ENST00000490193 TMEM2Q9UHN6 1383 aa13.01□□□□□ -0.33
USP39-216ENST00000490193 FAM135BQ49AJ0 1406 aa13.01□□□□□ -0.33
USP39-216ENST00000490193 PTPN23Q9H3S7 1636 aa13□□□□□ -0.33
USP39-216ENST00000490193 EFCAB6Q5THR3 1501 aa13□□□□□ -0.33
USP39-216ENST00000490193 ABCC5O15440 1437 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms