RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 AEBP2Q6ZN18 517 aaPredicted RBP22.64■■□□□ 1.21
USP39-216ENST00000490193 CHIC1Q5VXU3 224 aa21.21■□□□□ 0.99
USP39-216ENST00000490193 NISCHQ9Y2I1 1504 aa21.02■□□□□ 0.96
USP39-216ENST00000490193 SENP3Q9H4L4 574 aaPredicted RBP19.45■□□□□ 0.7
USP39-216ENST00000490193 PHF23Q9BUL5 403 aaPredicted RBP19.11■□□□□ 0.65
USP39-216ENST00000490193 ABCC9O60706 1549 aa19.07■□□□□ 0.64
USP39-216ENST00000490193 CCDC180Q9P1Z9 1646 aa19.02■□□□□ 0.64
USP39-216ENST00000490193 DNAJC5BQ9UF47 199 aa18.21■□□□□ 0.51
USP39-216ENST00000490193 RB1CC1Q8TDY2 1594 aa18.15■□□□□ 0.5
USP39-216ENST00000490193 FOXD1Q16676 465 aa18.13■□□□□ 0.49
USP39-216ENST00000490193 NACADO15069 1562 aa17.99■□□□□ 0.47
USP39-216ENST00000490193 UNC13AQ9UPW8 1703 aa17.78■□□□□ 0.44
USP39-216ENST00000490193 MYO15BQ96JP2 1530 aa17.72■□□□□ 0.43
USP39-216ENST00000490193 PABPN1Q86U42 306 aaKnown RBP eCLIP17.67■□□□□ 0.42
USP39-216ENST00000490193 DCAF8L2P0C7V8 631 aa17.64■□□□□ 0.41
USP39-216ENST00000490193 BICRAQ9NZM4 1560 aa17.64■□□□□ 0.41
USP39-216ENST00000490193 POTEDQ86YR6 584 aa17.45■□□□□ 0.38
USP39-216ENST00000490193 SHROOM4Q9ULL8 1493 aa17.44■□□□□ 0.38
USP39-216ENST00000490193 DCAF1Q9Y4B6 1507 aa17.42■□□□□ 0.38
USP39-216ENST00000490193 ZCCHC6Q5VYS8 1495 aaKnown RBP17.39■□□□□ 0.37
USP39-216ENST00000490193 CC2D2AQ9P2K1 1620 aa17.28■□□□□ 0.36
USP39-216ENST00000490193 CECR2Q9BXF3 1484 aa17.23■□□□□ 0.35
USP39-216ENST00000490193 SCRIBQ14160 1630 aa17.21■□□□□ 0.35
USP39-216ENST00000490193 EIF4G1Q04637 1599 aaKnown RBP17.2■□□□□ 0.34
USP39-216ENST00000490193 MSH5O43196 834 aa17.2■□□□□ 0.34
USP39-216ENST00000490193 DNAJC5Q9H3Z4 198 aa17.07■□□□□ 0.32
USP39-216ENST00000490193 PIAS4Q8N2W9 510 aaPredicted RBP16.8■□□□□ 0.28
USP39-216ENST00000490193 PLPPR3Q6T4P5 718 aa16.7■□□□□ 0.26
USP39-216ENST00000490193 PPP6R1Q9UPN7 881 aa16.6■□□□□ 0.25
USP39-216ENST00000490193 CUX2O14529 1486 aa16.6■□□□□ 0.25
USP39-216ENST00000490193 NCAPD3P42695 1498 aa16.59■□□□□ 0.25
USP39-216ENST00000490193 ADRA2BP18089 450 aa16.5■□□□□ 0.23
USP39-216ENST00000490193 ATAD2BQ9ULI0 1458 aa16.49■□□□□ 0.23
USP39-216ENST00000490193 ERCC6Q03468 1493 aa16.48■□□□□ 0.23
USP39-216ENST00000490193 HMGXB3Q12766 1538 aa16.48■□□□□ 0.23
USP39-216ENST00000490193 SMARCA2P51531 1590 aa16.46■□□□□ 0.23
USP39-216ENST00000490193 SMARCA4P51532 1647 aa16.45■□□□□ 0.22
USP39-216ENST00000490193 NESP48681 1621 aa16.34■□□□□ 0.21
USP39-216ENST00000490193 PEG3Q9GZU2 1588 aa16.34■□□□□ 0.21
USP39-216ENST00000490193 BAZ1AQ9NRL2 1556 aaPredicted RBP16.34■□□□□ 0.21
USP39-216ENST00000490193 BAZ1BQ9UIG0 1483 aaKnown RBP16.3■□□□□ 0.2
USP39-216ENST00000490193 THOC2Q8NI27 1593 aaKnown RBP16.29■□□□□ 0.2
USP39-216ENST00000490193 LAMC3Q9Y6N6 1575 aa16.27■□□□□ 0.2
USP39-216ENST00000490193 KIF21AQ7Z4S6 1674 aa16.18■□□□□ 0.18
USP39-216ENST00000490193 MROH2BQ7Z745 1585 aa16.17■□□□□ 0.18
USP39-216ENST00000490193 PDS5BQ9NTI5 1447 aa16.13■□□□□ 0.17
USP39-216ENST00000490193 TRIM41Q8WV44 630 aa16.09■□□□□ 0.17
USP39-216ENST00000490193 CADPSQ9ULU8 1353 aa16.04■□□□□ 0.16
USP39-216ENST00000490193 MRC2Q9UBG0 1479 aa16.02■□□□□ 0.15
USP39-216ENST00000490193 WDR62O43379 1518 aa16.01■□□□□ 0.15
USP39-216ENST00000490193 WIZO95785 1651 aa15.97■□□□□ 0.15
USP39-216ENST00000490193 CEP164Q9UPV0 1460 aa15.91■□□□□ 0.14
USP39-216ENST00000490193 FANCD2Q9BXW9 1451 aa15.86■□□□□ 0.13
USP39-216ENST00000490193 CFTRP13569 1480 aa15.84■□□□□ 0.13
USP39-216ENST00000490193 TOP2AP11388 1531 aaKnown RBP15.78■□□□□ 0.12
USP39-216ENST00000490193 URB2Q14146 1524 aaKnown RBP15.76■□□□□ 0.11
USP39-216ENST00000490193 RSF1Q96T23 1441 aaPredicted RBP15.76■□□□□ 0.11
USP39-216ENST00000490193 PRDM2Q13029 1718 aa15.74■□□□□ 0.11
USP39-216ENST00000490193 OSCARQ8IYS5 282 aa15.72■□□□□ 0.11
USP39-216ENST00000490193 RIMBP3CA6NJZ7 1639 aa15.61■□□□□ 0.09
USP39-216ENST00000490193 RIMBP3BA6NNM3 1639 aa15.61■□□□□ 0.09
USP39-216ENST00000490193 RIMBP3Q9UFD9 1639 aa15.61■□□□□ 0.09
USP39-216ENST00000490193 IFT140Q96RY7 1462 aa15.6■□□□□ 0.09
USP39-216ENST00000490193 ZNF608Q9ULD9 1512 aaPredicted RBP15.57■□□□□ 0.08
USP39-216ENST00000490193 CCDC88BA6NC98 1476 aa15.56■□□□□ 0.08
USP39-216ENST00000490193 TOPBP1Q92547 1522 aa15.55■□□□□ 0.08
USP39-216ENST00000490193 ABCC8Q09428 1581 aa15.53■□□□□ 0.08
USP39-216ENST00000490193 ARHGEF11O15085 1522 aa15.53■□□□□ 0.08
USP39-216ENST00000490193 EIF4G3O43432 1585 aaKnown RBP15.52■□□□□ 0.07
USP39-216ENST00000490193 DNMBPQ6XZF7 1577 aa15.49■□□□□ 0.07
USP39-216ENST00000490193 TARBP1Q13395 1621 aaKnown RBP15.46■□□□□ 0.07
USP39-216ENST00000490193 CHD1O14646 1710 aa15.45■□□□□ 0.06
USP39-216ENST00000490193 AQRO60306 1485 aaKnown RBP eCLIP15.38■□□□□ 0.051e-6■■■□□ 15.3
USP39-216ENST00000490193 POLA1P09884 1462 aaPredicted RBP15.38■□□□□ 0.05
USP39-216ENST00000490193 ARAP1Q96P48 1450 aa15.36■□□□□ 0.05
USP39-216ENST00000490193 DMRT2Q9Y5R5 561 aa15.36■□□□□ 0.05
USP39-216ENST00000490193 WDR97A6NE52 1622 aa15.34■□□□□ 0.05
USP39-216ENST00000490193 CYB5RLQ6IPT4 315 aa15.33■□□□□ 0.04
USP39-216ENST00000490193 RAD54L2Q9Y4B4 1467 aa15.28■□□□□ 0.04
USP39-216ENST00000490193 MAPK8IP2Q13387 824 aaPredicted RBP15.28■□□□□ 0.04
USP39-216ENST00000490193 CLASP1Q7Z460 1538 aa15.27■□□□□ 0.04
USP39-216ENST00000490193 SOGA1O94964 1423 aa15.27■□□□□ 0.04
USP39-216ENST00000490193 TRHP20396 242 aaPredicted RBP15.27■□□□□ 0.04
USP39-216ENST00000490193 SNAPC4Q5SXM2 1469 aa15.25■□□□□ 0.03
USP39-216ENST00000490193 TDRD9Q8NDG6 1382 aaKnown RBP15.24■□□□□ 0.03
USP39-216ENST00000490193 FBLN2P98095 1184 aa15.24■□□□□ 0.03
USP39-216ENST00000490193 FGD5Q6ZNL6 1462 aa15.24■□□□□ 0.03
USP39-216ENST00000490193 MAGI1Q96QZ7 1491 aaPredicted RBP15.23■□□□□ 0.03
USP39-216ENST00000490193 SYNJ1O43426 1573 aa15.23■□□□□ 0.03
USP39-216ENST00000490193 SCAF1Q9H7N4 1312 aaKnown RBP15.22■□□□□ 0.03
USP39-216ENST00000490193 CUX1P39880 1505 aa15.21■□□□□ 0.03
USP39-216ENST00000490193 GRIN2BQ13224 1484 aa15.2■□□□□ 0.02
USP39-216ENST00000490193 SYNJ2O15056 1496 aa15.17■□□□□ 0.02
USP39-216ENST00000490193 PBRM1Q86U86 1689 aa15.16■□□□□ 0.02
USP39-216ENST00000490193 CHMP7Q8WUX9 453 aaPredicted RBP15.14■□□□□ 0.01
USP39-216ENST00000490193 ABCA5Q8WWZ7 1642 aa15.11■□□□□ 0.01
USP39-216ENST00000490193 GAPVD1Q14C86 1478 aa15.1■□□□□ 0.01
USP39-216ENST00000490193 ABCA10Q8WWZ4 1543 aa15.08■□□□□ 0.01
USP39-216ENST00000490193 GRIN2AQ12879 1464 aa15.01□□□□□ -0.01
USP39-216ENST00000490193 ADAMTS12P58397 1594 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms