RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 MYO3AQ8NEV4 1616 aa38.56■■■■□ 3.76
LIME1-206ENST00000487026 FBXO31Q5XUX0 539 aaPredicted RBP38.56■■■■□ 3.76
LIME1-206ENST00000487026 CEP170BQ9Y4F5 1589 aaPredicted RBP38.51■■■■□ 3.76
LIME1-206ENST00000487026 MAST1Q9Y2H9 1570 aa38.5■■■■□ 3.75
LIME1-206ENST00000487026 KDM5DQ9BY66 1539 aa38.49■■■■□ 3.75
LIME1-206ENST00000487026 ZNF142P52746 1687 aaPredicted RBP38.49■■■■□ 3.75
LIME1-206ENST00000487026 TNRQ92752 1358 aa38.44■■■■□ 3.74
LIME1-206ENST00000487026 PZPP20742 1482 aa38.42■■■■□ 3.74
LIME1-206ENST00000487026 A2ML1A8K2U0 1454 aa38.41■■■■□ 3.74
LIME1-206ENST00000487026 FAM135AQ9P2D6 1515 aa38.41■■■■□ 3.74
LIME1-206ENST00000487026 PKD2Q13563 968 aa38.4■■■■□ 3.74
LIME1-206ENST00000487026 PLA2R1Q13018 1463 aa38.39■■■■□ 3.74
LIME1-206ENST00000487026 LTBP4Q8N2S1 1624 aa38.38■■■■□ 3.73
LIME1-206ENST00000487026 PTPN23Q9H3S7 1636 aa38.37■■■■□ 3.73
LIME1-206ENST00000487026 DNMT1P26358 1616 aaKnown RBP38.36■■■■□ 3.73
LIME1-206ENST00000487026 ABCC5O15440 1437 aa38.36■■■■□ 3.73
LIME1-206ENST00000487026 TCOF1Q13428 1488 aaKnown RBP38.35■■■■□ 3.73
LIME1-206ENST00000487026 RNF17Q9BXT8 1623 aaKnown RBP38.34■■■■□ 3.73
LIME1-206ENST00000487026 RRP7BPQ9NSQ0 103 aa38.33■■■■□ 3.73
LIME1-206ENST00000487026 FGD6Q6ZV73 1430 aa38.31■■■■□ 3.72
LIME1-206ENST00000487026 ZNF335Q9H4Z2 1342 aaPredicted RBP38.31■■■■□ 3.72
LIME1-206ENST00000487026 ABCC3O15438 1527 aa38.3■■■■□ 3.72
LIME1-206ENST00000487026 DUOX2Q9NRD8 1548 aa38.3■■■■□ 3.72
LIME1-206ENST00000487026 EIF2AK4Q9P2K8 1649 aaKnown RBP38.3■■■■□ 3.72
LIME1-206ENST00000487026 KIF15Q9NS87 1388 aa38.29■■■■□ 3.72
LIME1-206ENST00000487026 DAPK1P53355 1430 aa38.27■■■■□ 3.72
LIME1-206ENST00000487026 CHIC2Q9UKJ5 165 aa38.26■■■■□ 3.72
LIME1-206ENST00000487026 MROH1Q8NDA8 1641 aa38.26■■■■□ 3.71
LIME1-206ENST00000487026 SHANK2Q9UPX8 1470 aa38.25■■■■□ 3.71
LIME1-206ENST00000487026 CROCC2H7BZ55 1655 aa38.24■■■■□ 3.71
LIME1-206ENST00000487026 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.22■■■■□ 3.71
LIME1-206ENST00000487026 ZC3H13Q5T200 1668 aaKnown RBP38.2■■■■□ 3.71
LIME1-206ENST00000487026 THEMISQ8N1K5 641 aaPredicted RBP38.2■■■■□ 3.71
LIME1-206ENST00000487026 NLRP1Q9C000 1473 aa38.2■■■■□ 3.71
LIME1-206ENST00000487026 GRWD1Q9BQ67 446 aaKnown RBP eCLIP38.18■■■■□ 3.7
LIME1-206ENST00000487026 CEP152O94986 1710 aa38.18■■■■□ 3.7
LIME1-206ENST00000487026 UGGT1Q9NYU2 1555 aa38.15■■■■□ 3.7
LIME1-206ENST00000487026 ERBINQ96RT1 1412 aa38.15■■■■□ 3.7
LIME1-206ENST00000487026 ANKLE2Q86XL3 938 aa38.15■■■■□ 3.7
LIME1-206ENST00000487026 ERVK-7P63135 1459 aa38.14■■■■□ 3.7
LIME1-206ENST00000487026 SPATA31D1Q6ZQQ2 1576 aa38.14■■■■□ 3.7
LIME1-206ENST00000487026 FAM50AQ14320 339 aaKnown RBP38.13■■■■□ 3.69
LIME1-206ENST00000487026 CFAP65Q6ZU64 1925 aaKnown RBP38.12■■■■□ 3.69
LIME1-206ENST00000487026 NEURL4Q96JN8 1562 aa38.12■■■■□ 3.69
LIME1-206ENST00000487026 IQSEC2Q5JU85 1478 aa38.12■■■■□ 3.69
LIME1-206ENST00000487026 ANKRD30AQ9BXX3 1397 aa38.11■■■■□ 3.69
LIME1-206ENST00000487026 POLR1AO95602 1720 aaPredicted RBP38.11■■■■□ 3.69
LIME1-206ENST00000487026 PRDM15P57071 1507 aaPredicted RBP38.07■■■■□ 3.68
LIME1-206ENST00000487026 UBAP1LF5GYI3 381 aa38.01■■■■□ 3.68
LIME1-206ENST00000487026 KANK1Q14678 1352 aa38.01■■■■□ 3.68
LIME1-206ENST00000487026 ARHGAP31Q2M1Z3 1444 aa38■■■■□ 3.67
LIME1-206ENST00000487026 DEPDC5O75140 1603 aa37.99■■■■□ 3.67
LIME1-206ENST00000487026 NPHP4O75161 1426 aaPredicted RBP37.99■■■■□ 3.67
LIME1-206ENST00000487026 MED14O60244 1454 aa37.96■■■■□ 3.67
LIME1-206ENST00000487026 ADGRL2O95490 1459 aa37.93■■■■□ 3.66
LIME1-206ENST00000487026 UBR1Q8IWV7 1749 aa37.91■■■■□ 3.66
LIME1-206ENST00000487026 PPARGC1BQ86YN6 1023 aaKnown RBP37.9■■■■□ 3.66
LIME1-206ENST00000487026 VWDEQ8N2E2 1590 aa37.88■■■■□ 3.65
LIME1-206ENST00000487026 IQGAP1P46940 1657 aa37.86■■■■□ 3.65
LIME1-206ENST00000487026 CPS1P31327 1500 aa37.86■■■■□ 3.65
LIME1-206ENST00000487026 LMTK2Q8IWU2 1503 aa37.86■■■■□ 3.65
LIME1-206ENST00000487026 LTKP29376 864 aa37.85■■■■□ 3.65
LIME1-206ENST00000487026 TXNDC2Q86VQ3 553 aa37.84■■■■□ 3.65
LIME1-206ENST00000487026 ANKRD50Q9ULJ7 1429 aa37.83■■■■□ 3.65
LIME1-206ENST00000487026 IDI1Q13907 227 aa37.81■■■■□ 3.64
LIME1-206ENST00000487026 STAG3Q9UJ98 1225 aa37.81■■■■□ 3.64
LIME1-206ENST00000487026 PIK3C2BO00750 1634 aa37.79■■■■□ 3.64
LIME1-206ENST00000487026 SCAF11Q99590 1463 aaKnown RBP37.79■■■■□ 3.64
LIME1-206ENST00000487026 ARHGAP23Q9P227 1491 aa37.77■■■■□ 3.64
LIME1-206ENST00000487026 DISP3Q9P2K9 1392 aa37.77■■■■□ 3.64
LIME1-206ENST00000487026 SLIT1O75093 1534 aa37.77■■■■□ 3.64
LIME1-206ENST00000487026 PIP4K2BP78356 416 aa37.75■■■■□ 3.63
LIME1-206ENST00000487026 EID1Q9Y6B2 187 aa37.75■■■■□ 3.63
LIME1-206ENST00000487026 SCAF1Q9H7N4 1312 aaKnown RBP37.75■■■■□ 3.63
LIME1-206ENST00000487026 EFCAB6Q5THR3 1501 aa37.74■■■■□ 3.63
LIME1-206ENST00000487026 ITGAEP38570 1179 aa37.73■■■■□ 3.63
LIME1-206ENST00000487026 SYNMO15061 1565 aa37.72■■■■□ 3.63
LIME1-206ENST00000487026 TOM1O60784 492 aa37.72■■■■□ 3.63
LIME1-206ENST00000487026 TMEM2Q9UHN6 1383 aa37.71■■■■□ 3.63
LIME1-206ENST00000487026 NOS1P29475 1434 aa37.7■■■■□ 3.63
LIME1-206ENST00000487026 STRCP1A6NGW2 1772 aa37.7■■■■□ 3.63
LIME1-206ENST00000487026 SLC52A1Q9NWF4 448 aa37.64■■■■□ 3.62
LIME1-206ENST00000487026 LRRC7Q96NW7 1537 aa37.64■■■■□ 3.62
LIME1-206ENST00000487026 ROCK1Q13464 1354 aa37.63■■■■□ 3.61
LIME1-206ENST00000487026 HSPA1LP34931 641 aa37.6■■■■□ 3.61
LIME1-206ENST00000487026 KDM5AP29375 1690 aaKnown RBP37.59■■■■□ 3.61
LIME1-206ENST00000487026 RPRD2Q5VT52 1461 aaKnown RBP37.58■■■■□ 3.61
LIME1-206ENST00000487026 ILDR2Q71H61 639 aa37.58■■■■□ 3.61
LIME1-206ENST00000487026 TET3O43151 1660 aa37.57■■■■□ 3.61
LIME1-206ENST00000487026 UNC13BO14795 1591 aa37.56■■■■□ 3.6
LIME1-206ENST00000487026 ADGRB3O60242 1522 aa37.56■■■■□ 3.6
LIME1-206ENST00000487026 ALKQ9UM73 1620 aa37.54■■■■□ 3.6
LIME1-206ENST00000487026 SLC26A8Q96RN1 970 aa37.54■■■■□ 3.6
LIME1-206ENST00000487026 SENP3Q9H4L4 574 aaPredicted RBP37.53■■■■□ 3.6
LIME1-206ENST00000487026 GCC2Q8IWJ2 1684 aa37.49■■■■□ 3.59
LIME1-206ENST00000487026 NUP155O75694 1391 aa37.48■■■■□ 3.59
LIME1-206ENST00000487026 BCANQ96GW7 911 aa37.48■■■■□ 3.59
LIME1-206ENST00000487026 CHGAP10645 457 aaKnown RBP37.45■■■■□ 3.59
LIME1-206ENST00000487026 E9PCH4 1651 aa37.44■■■■□ 3.58
LIME1-206ENST00000487026 IQGAP3Q86VI3 1631 aa37.43■■■■□ 3.58
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms