RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 PLA2R1Q13018 1463 aa30.46■■■□□ 2.47
COL27A1-205ENST00000485397 PKD2Q13563 968 aa30.46■■■□□ 2.47
COL27A1-205ENST00000485397 WASHC2CQ9Y4E1 1318 aa30.44■■■□□ 2.46
COL27A1-205ENST00000485397 TCOF1Q13428 1488 aaKnown RBP30.43■■■□□ 2.46
COL27A1-205ENST00000485397 MAP3K1Q13233 1512 aa30.42■■■□□ 2.46
COL27A1-205ENST00000485397 A2ML1A8K2U0 1454 aa30.42■■■□□ 2.46
COL27A1-205ENST00000485397 KDM5DQ9BY66 1539 aa30.42■■■□□ 2.46
COL27A1-205ENST00000485397 ZNF335Q9H4Z2 1342 aaPredicted RBP30.41■■■□□ 2.46
COL27A1-205ENST00000485397 TNRQ92752 1358 aa30.41■■■□□ 2.46
COL27A1-205ENST00000485397 PZPP20742 1482 aa30.39■■■□□ 2.46
COL27A1-205ENST00000485397 FAM135AQ9P2D6 1515 aa30.37■■■□□ 2.45
COL27A1-205ENST00000485397 DNMT1P26358 1616 aaKnown RBP30.37■■■□□ 2.45
COL27A1-205ENST00000485397 MYOM3Q5VTT5 1437 aa30.37■■■□□ 2.45
COL27A1-205ENST00000485397 MIA2Q96PC5 1412 aa30.35■■■□□ 2.45
COL27A1-205ENST00000485397 IQSEC2Q5JU85 1478 aa30.35■■■□□ 2.45
COL27A1-205ENST00000485397 MAST1Q9Y2H9 1570 aa30.34■■■□□ 2.45
COL27A1-205ENST00000485397 RNF17Q9BXT8 1623 aaKnown RBP30.26■■■□□ 2.44
COL27A1-205ENST00000485397 APLP2Q06481 763 aa30.25■■■□□ 2.43
COL27A1-205ENST00000485397 ABCC3O15438 1527 aa30.25■■■□□ 2.43
COL27A1-205ENST00000485397 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.24■■■□□ 2.43
COL27A1-205ENST00000485397 THEMISQ8N1K5 641 aaPredicted RBP30.23■■■□□ 2.43
COL27A1-205ENST00000485397 NLRP1Q9C000 1473 aa30.23■■■□□ 2.43
COL27A1-205ENST00000485397 NEURL4Q96JN8 1562 aa30.21■■■□□ 2.43
COL27A1-205ENST00000485397 UBAP1LF5GYI3 381 aa30.21■■■□□ 2.43
COL27A1-205ENST00000485397 ANKLE2Q86XL3 938 aa30.21■■■□□ 2.43
COL27A1-205ENST00000485397 EIF2AK4Q9P2K8 1649 aaKnown RBP30.21■■■□□ 2.43
COL27A1-205ENST00000485397 ABCC5O15440 1437 aa30.19■■■□□ 2.42
COL27A1-205ENST00000485397 UGGT1Q9NYU2 1555 aa30.19■■■□□ 2.42
COL27A1-205ENST00000485397 MROH1Q8NDA8 1641 aa30.18■■■□□ 2.42
COL27A1-205ENST00000485397 DISP3Q9P2K9 1392 aa30.18■■■□□ 2.42
COL27A1-205ENST00000485397 DUOX2Q9NRD8 1548 aa30.18■■■□□ 2.42
COL27A1-205ENST00000485397 POLR1AO95602 1720 aaPredicted RBP30.18■■■□□ 2.42
COL27A1-205ENST00000485397 RRP7BPQ9NSQ0 103 aa30.16■■■□□ 2.42
COL27A1-205ENST00000485397 ZC3H13Q5T200 1668 aaKnown RBP30.16■■■□□ 2.42
COL27A1-205ENST00000485397 KIF15Q9NS87 1388 aa30.15■■■□□ 2.42
COL27A1-205ENST00000485397 PTPN23Q9H3S7 1636 aa30.15■■■□□ 2.42
COL27A1-205ENST00000485397 SPATA31D1Q6ZQQ2 1576 aa30.15■■■□□ 2.42
COL27A1-205ENST00000485397 ERVK-7P63135 1459 aa30.14■■■□□ 2.42
COL27A1-205ENST00000485397 SHANK2Q9UPX8 1470 aa30.12■■■□□ 2.41
COL27A1-205ENST00000485397 CEP152O94986 1710 aa30.1■■■□□ 2.41
COL27A1-205ENST00000485397 NPHP4O75161 1426 aaPredicted RBP30.1■■■□□ 2.41
COL27A1-205ENST00000485397 DAPK1P53355 1430 aa30.1■■■□□ 2.41
COL27A1-205ENST00000485397 FGD6Q6ZV73 1430 aa30.1■■■□□ 2.41
COL27A1-205ENST00000485397 CROCC2H7BZ55 1655 aa30.08■■■□□ 2.41
COL27A1-205ENST00000485397 MED14O60244 1454 aa30.07■■■□□ 2.4
COL27A1-205ENST00000485397 ERBINQ96RT1 1412 aa30.07■■■□□ 2.4
COL27A1-205ENST00000485397 ILDR2Q71H61 639 aa30.07■■■□□ 2.4
COL27A1-205ENST00000485397 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.06■■■□□ 2.42e-9■□□□□ 10.3
COL27A1-205ENST00000485397 CHIC2Q9UKJ5 165 aa30.06■■■□□ 2.4
COL27A1-205ENST00000485397 CFAP65Q6ZU64 1925 aaKnown RBP30.06■■■□□ 2.4
COL27A1-205ENST00000485397 CPS1P31327 1500 aa30.06■■■□□ 2.4
COL27A1-205ENST00000485397 DEPDC5O75140 1603 aa30.05■■■□□ 2.4
COL27A1-205ENST00000485397 VWDEQ8N2E2 1590 aa30.04■■■□□ 2.4
COL27A1-205ENST00000485397 PRDM15P57071 1507 aaPredicted RBP30.03■■■□□ 2.4
COL27A1-205ENST00000485397 ARHGAP31Q2M1Z3 1444 aa30.01■■■□□ 2.39
COL27A1-205ENST00000485397 IQGAP1P46940 1657 aa29.98■■■□□ 2.39
COL27A1-205ENST00000485397 ANKRD30AQ9BXX3 1397 aa29.98■■■□□ 2.39
COL27A1-205ENST00000485397 SCAF1Q9H7N4 1312 aaKnown RBP29.97■■■□□ 2.39
COL27A1-205ENST00000485397 PIP4K2BP78356 416 aa29.97■■■□□ 2.39
COL27A1-205ENST00000485397 UBR1Q8IWV7 1749 aa29.96■■■□□ 2.39
COL27A1-205ENST00000485397 TOM1O60784 492 aa29.96■■■□□ 2.39
COL27A1-205ENST00000485397 KANK1Q14678 1352 aa29.95■■■□□ 2.39
COL27A1-205ENST00000485397 LTKP29376 864 aa29.93■■■□□ 2.38
COL27A1-205ENST00000485397 FAM50AQ14320 339 aaKnown RBP29.91■■■□□ 2.38
COL27A1-205ENST00000485397 TXNDC2Q86VQ3 553 aa29.91■■■□□ 2.38
COL27A1-205ENST00000485397 HSPA1LP34931 641 aa29.9■■■□□ 2.38
COL27A1-205ENST00000485397 SCAF11Q99590 1463 aaKnown RBP29.9■■■□□ 2.38
COL27A1-205ENST00000485397 ARHGAP23Q9P227 1491 aa29.89■■■□□ 2.38
COL27A1-205ENST00000485397 STRCP1A6NGW2 1772 aa29.87■■■□□ 2.37
COL27A1-205ENST00000485397 SLIT1O75093 1534 aa29.87■■■□□ 2.37
COL27A1-205ENST00000485397 LMTK2Q8IWU2 1503 aa29.86■■■□□ 2.37
COL27A1-205ENST00000485397 ADGRL2O95490 1459 aa29.85■■■□□ 2.37
COL27A1-205ENST00000485397 LRRC7Q96NW7 1537 aa29.85■■■□□ 2.37
COL27A1-205ENST00000485397 PIK3C2BO00750 1634 aa29.85■■■□□ 2.37
COL27A1-205ENST00000485397 IDI1Q13907 227 aa29.84■■■□□ 2.37
COL27A1-205ENST00000485397 STAG3Q9UJ98 1225 aa29.84■■■□□ 2.37
COL27A1-205ENST00000485397 EID1Q9Y6B2 187 aa29.84■■■□□ 2.37
COL27A1-205ENST00000485397 SOCS7O14512 581 aa29.83■■■□□ 2.37
COL27A1-205ENST00000485397 ALKQ9UM73 1620 aa29.82■■■□□ 2.36
COL27A1-205ENST00000485397 TMEM2Q9UHN6 1383 aa29.81■■■□□ 2.36
COL27A1-205ENST00000485397 NOS1P29475 1434 aa29.77■■■□□ 2.36
COL27A1-205ENST00000485397 ANKRD50Q9ULJ7 1429 aa29.77■■■□□ 2.36
COL27A1-205ENST00000485397 SYNMO15061 1565 aa29.77■■■□□ 2.36
COL27A1-205ENST00000485397 EFCAB6Q5THR3 1501 aa29.76■■■□□ 2.36
COL27A1-205ENST00000485397 SENP3Q9H4L4 574 aaPredicted RBP29.71■■■□□ 2.35
COL27A1-205ENST00000485397 KDM5AP29375 1690 aaKnown RBP29.69■■■□□ 2.34
COL27A1-205ENST00000485397 SLC52A1Q9NWF4 448 aa29.69■■■□□ 2.34
COL27A1-205ENST00000485397 SLC26A8Q96RN1 970 aa29.67■■■□□ 2.34
COL27A1-205ENST00000485397 MED1Q15648 1581 aaPredicted RBP29.66■■■□□ 2.34
COL27A1-205ENST00000485397 ADGRB3O60242 1522 aa29.66■■■□□ 2.34
COL27A1-205ENST00000485397 RPRD2Q5VT52 1461 aaKnown RBP29.64■■■□□ 2.34
COL27A1-205ENST00000485397 KCNA6P17658 529 aa29.62■■■□□ 2.33
COL27A1-205ENST00000485397 TET3O43151 1660 aa29.62■■■□□ 2.33
COL27A1-205ENST00000485397 XIRP1Q702N8 1843 aaKnown RBP29.61■■■□□ 2.33
COL27A1-205ENST00000485397 PPARGC1BQ86YN6 1023 aaKnown RBP29.59■■■□□ 2.33
COL27A1-205ENST00000485397 TMEM94Q12767 1356 aa29.58■■■□□ 2.33
COL27A1-205ENST00000485397 BCANQ96GW7 911 aa29.58■■■□□ 2.33
COL27A1-205ENST00000485397 ROCK1Q13464 1354 aa29.57■■■□□ 2.32
COL27A1-205ENST00000485397 UNC13BO14795 1591 aa29.56■■■□□ 2.32
COL27A1-205ENST00000485397 ITGAEP38570 1179 aa29.56■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms