RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 A2ML1A8K2U0 1454 aa21.02■□□□□ 0.96
VCL-205ENST00000478896 TCOF1Q13428 1488 aaKnown RBP21.01■□□□□ 0.95
VCL-205ENST00000478896 DNMT1P26358 1616 aaKnown RBP21.01■□□□□ 0.95
VCL-205ENST00000478896 TSPY4P0CV99 314 aa21.01■□□□□ 0.95
VCL-205ENST00000478896 TSPY10P0CW01 314 aa21.01■□□□□ 0.95
VCL-205ENST00000478896 LOC105371045A0A1W2PR82 267 aa21■□□□□ 0.95
VCL-205ENST00000478896 ZNF335Q9H4Z2 1342 aaPredicted RBP21■□□□□ 0.95
VCL-205ENST00000478896 PZPP20742 1482 aa21■□□□□ 0.95
VCL-205ENST00000478896 WASHC2CQ9Y4E1 1318 aa20.99■□□□□ 0.95
VCL-205ENST00000478896 TNRQ92752 1358 aa20.98■□□□□ 0.95
VCL-205ENST00000478896 POLR1AO95602 1720 aaPredicted RBP20.98■□□□□ 0.95
VCL-205ENST00000478896 MAST1Q9Y2H9 1570 aa20.95■□□□□ 0.94
VCL-205ENST00000478896 FBXO31Q5XUX0 539 aaPredicted RBP20.95■□□□□ 0.94
VCL-205ENST00000478896 DISP3Q9P2K9 1392 aa20.95■□□□□ 0.94
VCL-205ENST00000478896 MAP3K1Q13233 1512 aa20.94■□□□□ 0.94
VCL-205ENST00000478896 ZC3H13Q5T200 1668 aaKnown RBP20.93■□□□□ 0.94
VCL-205ENST00000478896 RNF17Q9BXT8 1623 aaKnown RBP20.93■□□□□ 0.94
VCL-205ENST00000478896 MYOM3Q5VTT5 1437 aa20.92■□□□□ 0.94
VCL-205ENST00000478896 EIF2AK4Q9P2K8 1649 aaKnown RBP20.92■□□□□ 0.94
VCL-205ENST00000478896 KANK4Q5T7N3 995 aaPredicted RBP20.91■□□□□ 0.94
VCL-205ENST00000478896 MIA2Q96PC5 1412 aa20.91■□□□□ 0.94
VCL-205ENST00000478896 SPATA31D1Q6ZQQ2 1576 aa20.9■□□□□ 0.94
VCL-205ENST00000478896 NEURL4Q96JN8 1562 aa20.89■□□□□ 0.94
VCL-205ENST00000478896 UGGT1Q9NYU2 1555 aa20.89■□□□□ 0.94
VCL-205ENST00000478896 NLRP1Q9C000 1473 aa20.89■□□□□ 0.94
VCL-205ENST00000478896 UBAP1LF5GYI3 381 aa20.88■□□□□ 0.93
VCL-205ENST00000478896 ABCC3O15438 1527 aa20.88■□□□□ 0.93
VCL-205ENST00000478896 CEP152O94986 1710 aa20.87■□□□□ 0.93
VCL-205ENST00000478896 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.86■□□□□ 0.93
VCL-205ENST00000478896 APLP2Q06481 763 aa20.85■□□□□ 0.93
VCL-205ENST00000478896 CROCC2H7BZ55 1655 aa20.84■□□□□ 0.93
VCL-205ENST00000478896 ANKLE2Q86XL3 938 aa20.84■□□□□ 0.93
VCL-205ENST00000478896 THEMISQ8N1K5 641 aaPredicted RBP20.84■□□□□ 0.93
VCL-205ENST00000478896 DUOX2Q9NRD8 1548 aa20.83■□□□□ 0.93
VCL-205ENST00000478896 MROH1Q8NDA8 1641 aa20.83■□□□□ 0.93
VCL-205ENST00000478896 CPS1P31327 1500 aa20.83■□□□□ 0.92
VCL-205ENST00000478896 DEPDC5O75140 1603 aa20.82■□□□□ 0.92
VCL-205ENST00000478896 PTPN23Q9H3S7 1636 aa20.82■□□□□ 0.92
VCL-205ENST00000478896 ERVK-7P63135 1459 aa20.81■□□□□ 0.92
VCL-205ENST00000478896 CFAP65Q6ZU64 1925 aaKnown RBP20.8■□□□□ 0.92
VCL-205ENST00000478896 SHANK2Q9UPX8 1470 aa20.8■□□□□ 0.92
VCL-205ENST00000478896 IQGAP1P46940 1657 aa20.8■□□□□ 0.92
VCL-205ENST00000478896 NPHP4O75161 1426 aaPredicted RBP20.79■□□□□ 0.92
VCL-205ENST00000478896 SCAF1Q9H7N4 1312 aaKnown RBP20.78■□□□□ 0.92
VCL-205ENST00000478896 KIF15Q9NS87 1388 aa20.78■□□□□ 0.92
VCL-205ENST00000478896 ILDR2Q71H61 639 aa20.77■□□□□ 0.92
VCL-205ENST00000478896 PRDM15P57071 1507 aaPredicted RBP20.77■□□□□ 0.92
VCL-205ENST00000478896 ERBINQ96RT1 1412 aa20.77■□□□□ 0.91
VCL-205ENST00000478896 MED14O60244 1454 aa20.76■□□□□ 0.91
VCL-205ENST00000478896 VWDEQ8N2E2 1590 aa20.76■□□□□ 0.91
VCL-205ENST00000478896 ABCC5O15440 1437 aa20.75■□□□□ 0.91
VCL-205ENST00000478896 DAPK1P53355 1430 aa20.74■□□□□ 0.91
VCL-205ENST00000478896 UBR1Q8IWV7 1749 aa20.74■□□□□ 0.91
VCL-205ENST00000478896 RRP7BPQ9NSQ0 103 aa20.74■□□□□ 0.91
VCL-205ENST00000478896 TOM1O60784 492 aa20.73■□□□□ 0.91
VCL-205ENST00000478896 PIP4K2BP78356 416 aa20.73■□□□□ 0.91
VCL-205ENST00000478896 FGD6Q6ZV73 1430 aa20.72■□□□□ 0.91
VCL-205ENST00000478896 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.7■□□□□ 0.9
VCL-205ENST00000478896 KANK1Q14678 1352 aa20.69■□□□□ 0.9
VCL-205ENST00000478896 ARHGAP31Q2M1Z3 1444 aa20.68■□□□□ 0.9
VCL-205ENST00000478896 SCAF11Q99590 1463 aaKnown RBP20.68■□□□□ 0.9
VCL-205ENST00000478896 SYNMO15061 1565 aa20.68■□□□□ 0.9
VCL-205ENST00000478896 SOCS7O14512 581 aa20.67■□□□□ 0.9
VCL-205ENST00000478896 ANKRD30AQ9BXX3 1397 aa20.67■□□□□ 0.9
VCL-205ENST00000478896 STRCP1A6NGW2 1772 aa20.67■□□□□ 0.9
VCL-205ENST00000478896 CHIC2Q9UKJ5 165 aa20.66■□□□□ 0.9
VCL-205ENST00000478896 PIK3C2BO00750 1634 aa20.64■□□□□ 0.9
VCL-205ENST00000478896 HSPA1LP34931 641 aa20.64■□□□□ 0.89
VCL-205ENST00000478896 SLIT1O75093 1534 aa20.63■□□□□ 0.89
VCL-205ENST00000478896 STAG3Q9UJ98 1225 aa20.62■□□□□ 0.89
VCL-205ENST00000478896 LRRC7Q96NW7 1537 aa20.62■□□□□ 0.89
VCL-205ENST00000478896 ARHGAP23Q9P227 1491 aa20.62■□□□□ 0.89
VCL-205ENST00000478896 TXNDC2Q86VQ3 553 aa20.61■□□□□ 0.89
VCL-205ENST00000478896 EID1Q9Y6B2 187 aa20.6■□□□□ 0.89
VCL-205ENST00000478896 MED1Q15648 1581 aaPredicted RBP20.59■□□□□ 0.89
VCL-205ENST00000478896 LMTK2Q8IWU2 1503 aa20.59■□□□□ 0.89
VCL-205ENST00000478896 ALKQ9UM73 1620 aa20.59■□□□□ 0.89
VCL-205ENST00000478896 LTKP29376 864 aa20.58■□□□□ 0.89
VCL-205ENST00000478896 EFCAB6Q5THR3 1501 aa20.58■□□□□ 0.88
VCL-205ENST00000478896 FAM50AQ14320 339 aaKnown RBP20.57■□□□□ 0.88
VCL-205ENST00000478896 KDM5AP29375 1690 aaKnown RBP20.57■□□□□ 0.88
VCL-205ENST00000478896 ADGRL2O95490 1459 aa20.56■□□□□ 0.88
VCL-205ENST00000478896 TMEM2Q9UHN6 1383 aa20.56■□□□□ 0.88
VCL-205ENST00000478896 SENP3Q9H4L4 574 aaPredicted RBP20.55■□□□□ 0.88
VCL-205ENST00000478896 ADGRB3O60242 1522 aa20.52■□□□□ 0.87
VCL-205ENST00000478896 IDI1Q13907 227 aa20.51■□□□□ 0.87
VCL-205ENST00000478896 ANKRD50Q9ULJ7 1429 aa20.51■□□□□ 0.87
VCL-205ENST00000478896 XIRP1Q702N8 1843 aaKnown RBP20.5■□□□□ 0.87
VCL-205ENST00000478896 NOS1P29475 1434 aa20.5■□□□□ 0.87
VCL-205ENST00000478896 PHF23Q9BUL5 403 aaPredicted RBP20.48■□□□□ 0.87
VCL-205ENST00000478896 RPRD2Q5VT52 1461 aaKnown RBP20.47■□□□□ 0.87
VCL-205ENST00000478896 TET3O43151 1660 aa20.47■□□□□ 0.87
VCL-205ENST00000478896 GCC2Q8IWJ2 1684 aa20.45■□□□□ 0.86
VCL-205ENST00000478896 MYO5BQ9ULV0 1848 aa20.44■□□□□ 0.86
VCL-205ENST00000478896 BCANQ96GW7 911 aa20.44■□□□□ 0.86
VCL-205ENST00000478896 SLC52A1Q9NWF4 448 aa20.44■□□□□ 0.86
VCL-205ENST00000478896 UNC13BO14795 1591 aa20.43■□□□□ 0.86
VCL-205ENST00000478896 SLC26A8Q96RN1 970 aa20.43■□□□□ 0.86
VCL-205ENST00000478896 TMEM94Q12767 1356 aa20.42■□□□□ 0.86
VCL-205ENST00000478896 KCNA6P17658 529 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms