RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 EIF2AK4Q9P2K8 1649 aaKnown RBP29.71■■■□□ 2.35
COL7A1-207ENST00000467985 TCOF1Q13428 1488 aaKnown RBP29.7■■■□□ 2.35
COL7A1-207ENST00000467985 MYO3AQ8NEV4 1616 aa29.7■■■□□ 2.34
COL7A1-207ENST00000467985 CROCC2H7BZ55 1655 aa29.69■■■□□ 2.34
COL7A1-207ENST00000467985 ZNF142P52746 1687 aaPredicted RBP29.69■■■□□ 2.34
COL7A1-207ENST00000467985 RNF17Q9BXT8 1623 aaKnown RBP29.68■■■□□ 2.34
COL7A1-207ENST00000467985 FBXO41Q8TF61 875 aa29.68■■■□□ 2.34
COL7A1-207ENST00000467985 DUOX2Q9NRD8 1548 aa29.67■■■□□ 2.34
COL7A1-207ENST00000467985 ABCC5O15440 1437 aa29.67■■■□□ 2.34
COL7A1-207ENST00000467985 NCOA1Q15788 1441 aa29.67■■■□□ 2.34
COL7A1-207ENST00000467985 PTPRTO14522 1441 aa29.65■■■□□ 2.34
COL7A1-207ENST00000467985 DNMT1P26358 1616 aaKnown RBP29.65■■■□□ 2.34
COL7A1-207ENST00000467985 PZPP20742 1482 aa29.65■■■□□ 2.34
COL7A1-207ENST00000467985 CEP170BQ9Y4F5 1589 aaPredicted RBP29.64■■■□□ 2.34
COL7A1-207ENST00000467985 DAPK1P53355 1430 aa29.64■■■□□ 2.34
COL7A1-207ENST00000467985 CAMSAP1Q5T5Y3 1602 aa29.63■■■□□ 2.33
COL7A1-207ENST00000467985 KIF15Q9NS87 1388 aa29.62■■■□□ 2.33
COL7A1-207ENST00000467985 ZC3H13Q5T200 1668 aaKnown RBP29.61■■■□□ 2.33
COL7A1-207ENST00000467985 TNRQ92752 1358 aa29.59■■■□□ 2.33
COL7A1-207ENST00000467985 A2ML1A8K2U0 1454 aa29.58■■■□□ 2.33
COL7A1-207ENST00000467985 PLA2R1Q13018 1463 aa29.58■■■□□ 2.33
COL7A1-207ENST00000467985 ERBINQ96RT1 1412 aa29.58■■■□□ 2.33
COL7A1-207ENST00000467985 ABCC3O15438 1527 aa29.57■■■□□ 2.32
COL7A1-207ENST00000467985 CERKQ8TCT0 537 aa29.57■■■□□ 2.32
COL7A1-207ENST00000467985 FBXO31Q5XUX0 539 aaPredicted RBP29.56■■■□□ 2.32
COL7A1-207ENST00000467985 RRP7BPQ9NSQ0 103 aa29.56■■■□□ 2.32
COL7A1-207ENST00000467985 MROH1Q8NDA8 1641 aa29.55■■■□□ 2.32
COL7A1-207ENST00000467985 ANKRD30AQ9BXX3 1397 aa29.54■■■□□ 2.32
COL7A1-207ENST00000467985 PKD2Q13563 968 aa29.53■■■□□ 2.32
COL7A1-207ENST00000467985 NLRP1Q9C000 1473 aa29.49■■■□□ 2.31
COL7A1-207ENST00000467985 FAM50AQ14320 339 aaKnown RBP29.49■■■□□ 2.31
COL7A1-207ENST00000467985 PRDM15P57071 1507 aaPredicted RBP29.49■■■□□ 2.31
COL7A1-207ENST00000467985 NCKAP5LQ9HCH0 1330 aa29.48■■■□□ 2.31
COL7A1-207ENST00000467985 CHIC2Q9UKJ5 165 aa29.48■■■□□ 2.31
COL7A1-207ENST00000467985 CEP152O94986 1710 aa29.45■■■□□ 2.31
COL7A1-207ENST00000467985 SPATA31D1Q6ZQQ2 1576 aa29.45■■■□□ 2.31
COL7A1-207ENST00000467985 ADGRL2O95490 1459 aa29.45■■■□□ 2.31
COL7A1-207ENST00000467985 DEPDC5O75140 1603 aa29.45■■■□□ 2.3
COL7A1-207ENST00000467985 KANK1Q14678 1352 aa29.43■■■□□ 2.3
COL7A1-207ENST00000467985 ERVK-7P63135 1459 aa29.42■■■□□ 2.3
COL7A1-207ENST00000467985 THEMISQ8N1K5 641 aaPredicted RBP29.41■■■□□ 2.3
COL7A1-207ENST00000467985 ARHGAP31Q2M1Z3 1444 aa29.4■■■□□ 2.3
COL7A1-207ENST00000467985 UGGT1Q9NYU2 1555 aa29.39■■■□□ 2.3
COL7A1-207ENST00000467985 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.38■■■□□ 2.29
COL7A1-207ENST00000467985 LTBP4Q8N2S1 1624 aa29.38■■■□□ 2.29
COL7A1-207ENST00000467985 POLR1AO95602 1720 aaPredicted RBP29.37■■■□□ 2.29
COL7A1-207ENST00000467985 ANKLE2Q86XL3 938 aa29.34■■■□□ 2.29
COL7A1-207ENST00000467985 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.33■■■□□ 2.29
COL7A1-207ENST00000467985 LMTK2Q8IWU2 1503 aa29.33■■■□□ 2.29
COL7A1-207ENST00000467985 IQSEC2Q5JU85 1478 aa29.32■■■□□ 2.28
COL7A1-207ENST00000467985 CFAP65Q6ZU64 1925 aaKnown RBP29.32■■■□□ 2.28
COL7A1-207ENST00000467985 VWDEQ8N2E2 1590 aa29.31■■■□□ 2.28
COL7A1-207ENST00000467985 ANKRD50Q9ULJ7 1429 aa29.3■■■□□ 2.28
COL7A1-207ENST00000467985 NEURL4Q96JN8 1562 aa29.29■■■□□ 2.28
COL7A1-207ENST00000467985 ZNF335Q9H4Z2 1342 aaPredicted RBP29.28■■■□□ 2.28
COL7A1-207ENST00000467985 ROCK1Q13464 1354 aa29.26■■■□□ 2.27
COL7A1-207ENST00000467985 MED14O60244 1454 aa29.24■■■□□ 2.27
COL7A1-207ENST00000467985 UBR1Q8IWV7 1749 aa29.23■■■□□ 2.27
COL7A1-207ENST00000467985 PPARGC1BQ86YN6 1023 aaKnown RBP29.23■■■□□ 2.27
COL7A1-207ENST00000467985 EFCAB6Q5THR3 1501 aa29.22■■■□□ 2.27
COL7A1-207ENST00000467985 NPHP4O75161 1426 aaPredicted RBP29.2■■■□□ 2.27
COL7A1-207ENST00000467985 IQGAP1P46940 1657 aa29.16■■■□□ 2.26
COL7A1-207ENST00000467985 RPRD2Q5VT52 1461 aaKnown RBP29.16■■■□□ 2.26
COL7A1-207ENST00000467985 UNC13BO14795 1591 aa29.15■■■□□ 2.26
COL7A1-207ENST00000467985 KDM5AP29375 1690 aaKnown RBP29.15■■■□□ 2.26
COL7A1-207ENST00000467985 SLIT1O75093 1534 aa29.15■■■□□ 2.26
COL7A1-207ENST00000467985 PIK3C2BO00750 1634 aa29.14■■■□□ 2.26
COL7A1-207ENST00000467985 CPS1P31327 1500 aa29.14■■■□□ 2.25
COL7A1-207ENST00000467985 NOS1P29475 1434 aa29.13■■■□□ 2.25
COL7A1-207ENST00000467985 TET3O43151 1660 aa29.13■■■□□ 2.25
COL7A1-207ENST00000467985 ARHGAP23Q9P227 1491 aa29.13■■■□□ 2.25
COL7A1-207ENST00000467985 SCAF11Q99590 1463 aaKnown RBP29.12■■■□□ 2.25
COL7A1-207ENST00000467985 ITGAEP38570 1179 aa29.12■■■□□ 2.25
COL7A1-207ENST00000467985 STAG3Q9UJ98 1225 aa29.12■■■□□ 2.25
COL7A1-207ENST00000467985 SYNMO15061 1565 aa29.11■■■□□ 2.25
COL7A1-207ENST00000467985 EID1Q9Y6B2 187 aa29.1■■■□□ 2.25
COL7A1-207ENST00000467985 IDI1Q13907 227 aa29.09■■■□□ 2.25
COL7A1-207ENST00000467985 SLC52A1Q9NWF4 448 aa29.09■■■□□ 2.25
COL7A1-207ENST00000467985 GCC2Q8IWJ2 1684 aa29.09■■■□□ 2.25
COL7A1-207ENST00000467985 TXNDC2Q86VQ3 553 aa29.08■■■□□ 2.25
COL7A1-207ENST00000467985 RRBP1Q9P2E9 1410 aaKnown RBP29.08■■■□□ 2.25
COL7A1-207ENST00000467985 TMEM2Q9UHN6 1383 aa29.07■■■□□ 2.24
COL7A1-207ENST00000467985 UBAP1LF5GYI3 381 aa29.04■■■□□ 2.24
COL7A1-207ENST00000467985 LTKP29376 864 aa29.04■■■□□ 2.24
COL7A1-207ENST00000467985 IQGAP3Q86VI3 1631 aa29.03■■■□□ 2.24
COL7A1-207ENST00000467985 ADGRB3O60242 1522 aa29.03■■■□□ 2.24
COL7A1-207ENST00000467985 NUP155O75694 1391 aa29■■■□□ 2.23
COL7A1-207ENST00000467985 E9PCH4 1651 aa28.96■■■□□ 2.23
COL7A1-207ENST00000467985 TOM1O60784 492 aa28.92■■■□□ 2.22
COL7A1-207ENST00000467985 STRCP1A6NGW2 1772 aa28.91■■■□□ 2.22
COL7A1-207ENST00000467985 HDGFP51858 240 aaKnown RBP28.89■■■□□ 2.22
COL7A1-207ENST00000467985 LRRC7Q96NW7 1537 aa28.89■■■□□ 2.21
COL7A1-207ENST00000467985 TMEM131LA2VDJ0 1609 aa28.88■■■□□ 2.21
COL7A1-207ENST00000467985 NAIPQ13075 1403 aa28.86■■■□□ 2.21
COL7A1-207ENST00000467985 MYO5BQ9ULV0 1848 aa28.85■■■□□ 2.21
COL7A1-207ENST00000467985 ZFYVE9O95405 1425 aa28.85■■■□□ 2.21
COL7A1-207ENST00000467985 RIMS2Q9UQ26 1411 aa28.82■■■□□ 2.2
COL7A1-207ENST00000467985 HFM1A2PYH4 1435 aa28.81■■■□□ 2.2
COL7A1-207ENST00000467985 CHGAP10645 457 aaKnown RBP28.81■■■□□ 2.2
COL7A1-207ENST00000467985 SCAF1Q9H7N4 1312 aaKnown RBP28.8■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms