RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 FAM135AQ9P2D6 1515 aa30.28■■■□□ 2.44
COL9A3-206ENST00000466532 MYOM3Q5VTT5 1437 aa30.25■■■□□ 2.43
COL9A3-206ENST00000466532 LTBP4Q8N2S1 1624 aa30.24■■■□□ 2.43
COL9A3-206ENST00000466532 PLA2R1Q13018 1463 aa30.24■■■□□ 2.43
COL9A3-206ENST00000466532 MIA2Q96PC5 1412 aa30.23■■■□□ 2.43
COL9A3-206ENST00000466532 DNMT1P26358 1616 aaKnown RBP30.22■■■□□ 2.43
COL9A3-206ENST00000466532 NCKAP5LQ9HCH0 1330 aa30.22■■■□□ 2.43
COL9A3-206ENST00000466532 RNF17Q9BXT8 1623 aaKnown RBP30.21■■■□□ 2.43
COL9A3-206ENST00000466532 A2ML1A8K2U0 1454 aa30.2■■■□□ 2.43
COL9A3-206ENST00000466532 PZPP20742 1482 aa30.2■■■□□ 2.43
COL9A3-206ENST00000466532 EIF2AK4Q9P2K8 1649 aaKnown RBP30.19■■■□□ 2.42
COL9A3-206ENST00000466532 WASHC2CQ9Y4E1 1318 aa30.19■■■□□ 2.42
COL9A3-206ENST00000466532 TCOF1Q13428 1488 aaKnown RBP30.18■■■□□ 2.42
COL9A3-206ENST00000466532 POLR1AO95602 1720 aaPredicted RBP30.17■■■□□ 2.42
COL9A3-206ENST00000466532 CROCC2H7BZ55 1655 aa30.17■■■□□ 2.42
COL9A3-206ENST00000466532 ZC3H13Q5T200 1668 aaKnown RBP30.17■■■□□ 2.42
COL9A3-206ENST00000466532 TNRQ92752 1358 aa30.15■■■□□ 2.42
COL9A3-206ENST00000466532 PKD2Q13563 968 aa30.15■■■□□ 2.42
COL9A3-206ENST00000466532 FBXO31Q5XUX0 539 aaPredicted RBP30.15■■■□□ 2.42
COL9A3-206ENST00000466532 APLP2Q06481 763 aa30.14■■■□□ 2.42
COL9A3-206ENST00000466532 PTPN23Q9H3S7 1636 aa30.13■■■□□ 2.41
COL9A3-206ENST00000466532 IQSEC2Q5JU85 1478 aa30.11■■■□□ 2.41
COL9A3-206ENST00000466532 CEP152O94986 1710 aa30.1■■■□□ 2.41
COL9A3-206ENST00000466532 CFAP65Q6ZU64 1925 aaKnown RBP30.09■■■□□ 2.41
COL9A3-206ENST00000466532 MROH1Q8NDA8 1641 aa30.08■■■□□ 2.41
COL9A3-206ENST00000466532 ABCC3O15438 1527 aa30.08■■■□□ 2.41
COL9A3-206ENST00000466532 DUOX2Q9NRD8 1548 aa30.07■■■□□ 2.4
COL9A3-206ENST00000466532 ZNF335Q9H4Z2 1342 aaPredicted RBP30.06■■■□□ 2.4
COL9A3-206ENST00000466532 SHANK2Q9UPX8 1470 aa30.04■■■□□ 2.4
COL9A3-206ENST00000466532 NEURL4Q96JN8 1562 aa30.03■■■□□ 2.4
COL9A3-206ENST00000466532 NLRP1Q9C000 1473 aa30.03■■■□□ 2.4
COL9A3-206ENST00000466532 ABCC5O15440 1437 aa30.01■■■□□ 2.39
COL9A3-206ENST00000466532 UGGT1Q9NYU2 1555 aa30.01■■■□□ 2.39
COL9A3-206ENST00000466532 SPATA31D1Q6ZQQ2 1576 aa30■■■□□ 2.39
COL9A3-206ENST00000466532 FGD6Q6ZV73 1430 aa29.98■■■□□ 2.39
COL9A3-206ENST00000466532 KIF15Q9NS87 1388 aa29.98■■■□□ 2.39
COL9A3-206ENST00000466532 DAPK1P53355 1430 aa29.96■■■□□ 2.39
COL9A3-206ENST00000466532 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.96■■■□□ 2.39
COL9A3-206ENST00000466532 ERVK-7P63135 1459 aa29.95■■■□□ 2.39
COL9A3-206ENST00000466532 PRDM15P57071 1507 aaPredicted RBP29.95■■■□□ 2.38
COL9A3-206ENST00000466532 ERBINQ96RT1 1412 aa29.95■■■□□ 2.38
COL9A3-206ENST00000466532 THEMISQ8N1K5 641 aaPredicted RBP29.94■■■□□ 2.38
COL9A3-206ENST00000466532 DEPDC5O75140 1603 aa29.93■■■□□ 2.38
COL9A3-206ENST00000466532 RRP7BPQ9NSQ0 103 aa29.92■■■□□ 2.38
COL9A3-206ENST00000466532 ANKLE2Q86XL3 938 aa29.91■■■□□ 2.38
COL9A3-206ENST00000466532 UBR1Q8IWV7 1749 aa29.9■■■□□ 2.38
COL9A3-206ENST00000466532 IQGAP1P46940 1657 aa29.89■■■□□ 2.38
COL9A3-206ENST00000466532 MED14O60244 1454 aa29.86■■■□□ 2.37
COL9A3-206ENST00000466532 CPS1P31327 1500 aa29.85■■■□□ 2.37
COL9A3-206ENST00000466532 UBAP1LF5GYI3 381 aa29.84■■■□□ 2.37
COL9A3-206ENST00000466532 NPHP4O75161 1426 aaPredicted RBP29.84■■■□□ 2.37
COL9A3-206ENST00000466532 VWDEQ8N2E2 1590 aa29.83■■■□□ 2.37
COL9A3-206ENST00000466532 ANKRD30AQ9BXX3 1397 aa29.83■■■□□ 2.37
COL9A3-206ENST00000466532 CHIC2Q9UKJ5 165 aa29.83■■■□□ 2.37
COL9A3-206ENST00000466532 ARHGAP31Q2M1Z3 1444 aa29.82■■■□□ 2.36
COL9A3-206ENST00000466532 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.81■■■□□ 2.36
COL9A3-206ENST00000466532 KANK1Q14678 1352 aa29.78■■■□□ 2.36
COL9A3-206ENST00000466532 PIK3C2BO00750 1634 aa29.76■■■□□ 2.35
COL9A3-206ENST00000466532 STRCP1A6NGW2 1772 aa29.76■■■□□ 2.35
COL9A3-206ENST00000466532 DISP3Q9P2K9 1392 aa29.76■■■□□ 2.35
COL9A3-206ENST00000466532 ADGRL2O95490 1459 aa29.75■■■□□ 2.35
COL9A3-206ENST00000466532 LMTK2Q8IWU2 1503 aa29.74■■■□□ 2.35
COL9A3-206ENST00000466532 FAM50AQ14320 339 aaKnown RBP29.73■■■□□ 2.35
COL9A3-206ENST00000466532 SLIT1O75093 1534 aa29.71■■■□□ 2.35
COL9A3-206ENST00000466532 SCAF11Q99590 1463 aaKnown RBP29.7■■■□□ 2.35
COL9A3-206ENST00000466532 KDM5AP29375 1690 aaKnown RBP29.69■■■□□ 2.34
COL9A3-206ENST00000466532 ARHGAP23Q9P227 1491 aa29.68■■■□□ 2.34
COL9A3-206ENST00000466532 EFCAB6Q5THR3 1501 aa29.67■■■□□ 2.34
COL9A3-206ENST00000466532 SYNMO15061 1565 aa29.66■■■□□ 2.34
COL9A3-206ENST00000466532 TOM1O60784 492 aa29.63■■■□□ 2.33
COL9A3-206ENST00000466532 SCAF1Q9H7N4 1312 aaKnown RBP29.63■■■□□ 2.33
COL9A3-206ENST00000466532 TXNDC2Q86VQ3 553 aa29.62■■■□□ 2.33
COL9A3-206ENST00000466532 ANKRD50Q9ULJ7 1429 aa29.62■■■□□ 2.33
COL9A3-206ENST00000466532 LTKP29376 864 aa29.61■■■□□ 2.33
COL9A3-206ENST00000466532 PIP4K2BP78356 416 aa29.61■■■□□ 2.33
COL9A3-206ENST00000466532 STAG3Q9UJ98 1225 aa29.6■■■□□ 2.33
COL9A3-206ENST00000466532 LRRC7Q96NW7 1537 aa29.6■■■□□ 2.33
COL9A3-206ENST00000466532 EID1Q9Y6B2 187 aa29.59■■■□□ 2.33
COL9A3-206ENST00000466532 TET3O43151 1660 aa29.58■■■□□ 2.33
COL9A3-206ENST00000466532 GCC2Q8IWJ2 1684 aa29.57■■■□□ 2.32
COL9A3-206ENST00000466532 ALKQ9UM73 1620 aa29.57■■■□□ 2.32
COL9A3-206ENST00000466532 NOS1P29475 1434 aa29.57■■■□□ 2.32
COL9A3-206ENST00000466532 TMEM2Q9UHN6 1383 aa29.57■■■□□ 2.32
COL9A3-206ENST00000466532 IDI1Q13907 227 aa29.56■■■□□ 2.32
COL9A3-206ENST00000466532 ILDR2Q71H61 639 aa29.56■■■□□ 2.32
COL9A3-206ENST00000466532 MYO5BQ9ULV0 1848 aa29.56■■■□□ 2.32
COL9A3-206ENST00000466532 XIRP1Q702N8 1843 aaKnown RBP29.55■■■□□ 2.32
COL9A3-206ENST00000466532 UNC13BO14795 1591 aa29.55■■■□□ 2.32
COL9A3-206ENST00000466532 ADGRB3O60242 1522 aa29.55■■■□□ 2.32
COL9A3-206ENST00000466532 RPRD2Q5VT52 1461 aaKnown RBP29.53■■■□□ 2.32
COL9A3-206ENST00000466532 HSPA1LP34931 641 aa29.51■■■□□ 2.31
COL9A3-206ENST00000466532 SLC52A1Q9NWF4 448 aa29.47■■■□□ 2.31
COL9A3-206ENST00000466532 E9PCH4 1651 aa29.47■■■□□ 2.31
COL9A3-206ENST00000466532 ROCK1Q13464 1354 aa29.45■■■□□ 2.31
COL9A3-206ENST00000466532 IQGAP3Q86VI3 1631 aa29.44■■■□□ 2.3
COL9A3-206ENST00000466532 PPARGC1BQ86YN6 1023 aaKnown RBP29.41■■■□□ 2.3
COL9A3-206ENST00000466532 TMEM131LA2VDJ0 1609 aa29.41■■■□□ 2.3
COL9A3-206ENST00000466532 MED1Q15648 1581 aaPredicted RBP29.4■■■□□ 2.3
COL9A3-206ENST00000466532 ITGAEP38570 1179 aa29.38■■■□□ 2.29
COL9A3-206ENST00000466532 SOCS7O14512 581 aa29.36■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 137.9 ms