RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 KANK1Q14678 1352 aa16.22■□□□□ 0.19
UBR4-208ENST00000459947 MLECQ14165 292 aa16.22■□□□□ 0.19
UBR4-208ENST00000459947 KIF3BO15066 747 aa16.21■□□□□ 0.19
UBR4-208ENST00000459947 NPATQ14207 1427 aa16.19■□□□□ 0.18
UBR4-208ENST00000459947 PPARGC1BQ86YN6 1023 aaKnown RBP16.19■□□□□ 0.18
UBR4-208ENST00000459947 DEPDC5O75140 1603 aa16.19■□□□□ 0.18
UBR4-208ENST00000459947 PRDM15P57071 1507 aaPredicted RBP16.19■□□□□ 0.18
UBR4-208ENST00000459947 ANKRD50Q9ULJ7 1429 aa16.18■□□□□ 0.18
UBR4-208ENST00000459947 RRP7BPQ9NSQ0 103 aa16.17■□□□□ 0.18
UBR4-208ENST00000459947 GGT6Q6P531 493 aa16.17■□□□□ 0.18
UBR4-208ENST00000459947 CHIC2Q9UKJ5 165 aa16.16■□□□□ 0.18
UBR4-208ENST00000459947 CLTCQ00610 1675 aaKnown RBP16.16■□□□□ 0.18
UBR4-208ENST00000459947 GCC2Q8IWJ2 1684 aa16.15■□□□□ 0.18
UBR4-208ENST00000459947 C3P01024 1663 aa16.14■□□□□ 0.18
UBR4-208ENST00000459947 LMTK2Q8IWU2 1503 aa16.14■□□□□ 0.17
UBR4-208ENST00000459947 SETD1BQ9UPS6 1966 aaKnown RBP16.13■□□□□ 0.17
UBR4-208ENST00000459947 WASHC2CQ9Y4E1 1318 aa16.13■□□□□ 0.17
UBR4-208ENST00000459947 ABCC3O15438 1527 aa16.13■□□□□ 0.17
UBR4-208ENST00000459947 UNC13BO14795 1591 aa16.13■□□□□ 0.17
UBR4-208ENST00000459947 PTPRKQ15262 1439 aa16.13■□□□□ 0.17
UBR4-208ENST00000459947 MROH1Q8NDA8 1641 aa16.12■□□□□ 0.17
UBR4-208ENST00000459947 PZPP20742 1482 aa16.12■□□□□ 0.17
UBR4-208ENST00000459947 PREX1Q8TCU6 1659 aa16.12■□□□□ 0.17
UBR4-208ENST00000459947 ZMYM3Q14202 1370 aa16.12■□□□□ 0.17
UBR4-208ENST00000459947 ARHGAP31Q2M1Z3 1444 aa16.12■□□□□ 0.17
UBR4-208ENST00000459947 VWDEQ8N2E2 1590 aa16.11■□□□□ 0.17
UBR4-208ENST00000459947 HFM1A2PYH4 1435 aa16.11■□□□□ 0.17
UBR4-208ENST00000459947 CAMSAP1Q5T5Y3 1602 aa16.09■□□□□ 0.17
UBR4-208ENST00000459947 UHRF1BP1Q6BDS2 1440 aa16.09■□□□□ 0.17
UBR4-208ENST00000459947 ITGAEP38570 1179 aa16.09■□□□□ 0.17
UBR4-208ENST00000459947 RPRD2Q5VT52 1461 aaKnown RBP16.07■□□□□ 0.16
UBR4-208ENST00000459947 TET3O43151 1660 aa16.07■□□□□ 0.16
UBR4-208ENST00000459947 CEP152O94986 1710 aa16.07■□□□□ 0.16
UBR4-208ENST00000459947 IQGAP3Q86VI3 1631 aa16.06■□□□□ 0.16
UBR4-208ENST00000459947 NAIPQ13075 1403 aa16.06■□□□□ 0.16
UBR4-208ENST00000459947 NLRP1Q9C000 1473 aa16.04■□□□□ 0.16
UBR4-208ENST00000459947 SPATA31D1Q6ZQQ2 1576 aa16.04■□□□□ 0.16
UBR4-208ENST00000459947 TNRQ92752 1358 aa16.04■□□□□ 0.16
UBR4-208ENST00000459947 EFCAB6Q5THR3 1501 aa16.04■□□□□ 0.16
UBR4-208ENST00000459947 ZNF142P52746 1687 aaPredicted RBP16.04■□□□□ 0.16
UBR4-208ENST00000459947 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.02■□□□□ 0.15
UBR4-208ENST00000459947 ERVK-7P63135 1459 aa16.02■□□□□ 0.15
UBR4-208ENST00000459947 MYO3AQ8NEV4 1616 aa16.01■□□□□ 0.15
UBR4-208ENST00000459947 A2ML1A8K2U0 1454 aa16.01■□□□□ 0.15
UBR4-208ENST00000459947 LMTK3Q96Q04 1460 aa16■□□□□ 0.15
UBR4-208ENST00000459947 CEBPAP49715 358 aaPredicted RBP15.99■□□□□ 0.15
UBR4-208ENST00000459947 NUP155O75694 1391 aa15.99■□□□□ 0.15
UBR4-208ENST00000459947 SETD5Q9C0A6 1442 aa15.98■□□□□ 0.15
UBR4-208ENST00000459947 CEP170BQ9Y4F5 1589 aaPredicted RBP15.98■□□□□ 0.15
UBR4-208ENST00000459947 HRCP23327 699 aa15.97■□□□□ 0.15
UBR4-208ENST00000459947 PLPPR3Q6T4P5 718 aa15.97■□□□□ 0.15
UBR4-208ENST00000459947 KDM5AP29375 1690 aaKnown RBP15.96■□□□□ 0.15
UBR4-208ENST00000459947 PLA2R1Q13018 1463 aa15.96■□□□□ 0.15
UBR4-208ENST00000459947 NOS1P29475 1434 aa15.94■□□□□ 0.14
UBR4-208ENST00000459947 SLC52A1Q9NWF4 448 aa15.94■□□□□ 0.14
UBR4-208ENST00000459947 DMRT2Q9Y5R5 561 aa15.94■□□□□ 0.14
UBR4-208ENST00000459947 THEMISQ8N1K5 641 aaPredicted RBP15.91■□□□□ 0.14
UBR4-208ENST00000459947 TRIM52Q96A61 297 aa15.91■□□□□ 0.14
UBR4-208ENST00000459947 E9PCH4 1651 aa15.91■□□□□ 0.14
UBR4-208ENST00000459947 PKD2Q13563 968 aa15.9■□□□□ 0.14
UBR4-208ENST00000459947 UGGT1Q9NYU2 1555 aa15.9■□□□□ 0.14
UBR4-208ENST00000459947 FBXO31Q5XUX0 539 aaPredicted RBP15.89■□□□□ 0.13
UBR4-208ENST00000459947 PTPRTO14522 1441 aa15.87■□□□□ 0.13
UBR4-208ENST00000459947 SPHKAPQ2M3C7 1700 aa15.87■□□□□ 0.13
UBR4-208ENST00000459947 ADGRB3O60242 1522 aa15.87■□□□□ 0.13
UBR4-208ENST00000459947 SYNMO15061 1565 aa15.86■□□□□ 0.13
UBR4-208ENST00000459947 HDGFP51858 240 aaKnown RBP15.86■□□□□ 0.13
UBR4-208ENST00000459947 PIK3C2BO00750 1634 aa15.85■□□□□ 0.13
UBR4-208ENST00000459947 RAB3GAP2Q9H2M9 1393 aa15.85■□□□□ 0.13
UBR4-208ENST00000459947 SLC4A1APQ9BWU0 796 aaKnown RBP15.85■□□□□ 0.13
UBR4-208ENST00000459947 UBR1Q8IWV7 1749 aa15.85■□□□□ 0.13
UBR4-208ENST00000459947 TRPM2O94759 1503 aa15.85■□□□□ 0.13
UBR4-208ENST00000459947 STAG3Q9UJ98 1225 aa15.85■□□□□ 0.13
UBR4-208ENST00000459947 TRIM26Q12899 539 aaPredicted RBP15.84■□□□□ 0.13
UBR4-208ENST00000459947 SLIT1O75093 1534 aa15.83■□□□□ 0.12
UBR4-208ENST00000459947 POLR1AO95602 1720 aaPredicted RBP15.83■□□□□ 0.12
UBR4-208ENST00000459947 CFAP65Q6ZU64 1925 aaKnown RBP15.83■□□□□ 0.12
UBR4-208ENST00000459947 ANKLE2Q86XL3 938 aa15.82■□□□□ 0.12
UBR4-208ENST00000459947 ARHGAP23Q9P227 1491 aa15.82■□□□□ 0.12
UBR4-208ENST00000459947 EID1Q9Y6B2 187 aa15.81■□□□□ 0.12
UBR4-208ENST00000459947 HSPA2P54652 639 aa15.8■□□□□ 0.12
UBR4-208ENST00000459947 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.8■□□□□ 0.12
UBR4-208ENST00000459947 MPHOSPH9Q99550 1183 aa15.79■□□□□ 0.12
UBR4-208ENST00000459947 MED14O60244 1454 aa15.79■□□□□ 0.12
UBR4-208ENST00000459947 STRCQ7RTU9 1775 aa15.78■□□□□ 0.12
UBR4-208ENST00000459947 IDI1Q13907 227 aa15.78■□□□□ 0.12
UBR4-208ENST00000459947 NEURL4Q96JN8 1562 aa15.78■□□□□ 0.12
UBR4-208ENST00000459947 SCAF11Q99590 1463 aaKnown RBP15.78■□□□□ 0.12
UBR4-208ENST00000459947 TMEM2Q9UHN6 1383 aa15.77■□□□□ 0.12
UBR4-208ENST00000459947 KIF1BO60333 1816 aa15.77■□□□□ 0.12
UBR4-208ENST00000459947 TMEM131LA2VDJ0 1609 aa15.77■□□□□ 0.11
UBR4-208ENST00000459947 NPHP4O75161 1426 aaPredicted RBP15.75■□□□□ 0.11
UBR4-208ENST00000459947 CCDC144AA2RUR9 1427 aa15.74■□□□□ 0.11
UBR4-208ENST00000459947 RPGRIP1LQ68CZ1 1315 aa15.74■□□□□ 0.11
UBR4-208ENST00000459947 CLTCL1P53675 1640 aa15.74■□□□□ 0.11
UBR4-208ENST00000459947 IQGAP1P46940 1657 aa15.73■□□□□ 0.11
UBR4-208ENST00000459947 RIMS2Q9UQ26 1411 aa15.72■□□□□ 0.11
UBR4-208ENST00000459947 TXNDC2Q86VQ3 553 aa15.71■□□□□ 0.11
UBR4-208ENST00000459947 DIP2AQ14689 1571 aa15.7■□□□□ 0.1
UBR4-208ENST00000459947 NCKAP5LQ9HCH0 1330 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms