RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 NISCHQ9Y2I1 1504 aa25.72■■□□□ 1.71
UBR4-208ENST00000459947 CCDC180Q9P1Z9 1646 aa22.98■■□□□ 1.27
UBR4-208ENST00000459947 ABCC9O60706 1549 aa22.1■■□□□ 1.13
UBR4-208ENST00000459947 NACADO15069 1562 aa21.55■■□□□ 1.04
UBR4-208ENST00000459947 RB1CC1Q8TDY2 1594 aa21.53■■□□□ 1.04
UBR4-208ENST00000459947 MYO15BQ96JP2 1530 aa21.53■■□□□ 1.04
UBR4-208ENST00000459947 ZCCHC6Q5VYS8 1495 aaKnown RBP21.47■■□□□ 1.03
UBR4-208ENST00000459947 DCAF1Q9Y4B6 1507 aa21.44■■□□□ 1.02
UBR4-208ENST00000459947 DCAF8L2P0C7V8 631 aa21.24■□□□□ 0.99
UBR4-208ENST00000459947 UNC13AQ9UPW8 1703 aa20.87■□□□□ 0.93
UBR4-208ENST00000459947 SHROOM4Q9ULL8 1493 aa20.83■□□□□ 0.93
UBR4-208ENST00000459947 SCRIBQ14160 1630 aa20.75■□□□□ 0.91
UBR4-208ENST00000459947 BICRAQ9NZM4 1560 aa20.71■□□□□ 0.91
UBR4-208ENST00000459947 PABPN1Q86U42 306 aaKnown RBP eCLIP20.57■□□□□ 0.884e-8■■□□□ 13.3
UBR4-208ENST00000459947 EIF4G1Q04637 1599 aaKnown RBP20.2■□□□□ 0.82
UBR4-208ENST00000459947 CC2D2AQ9P2K1 1620 aa20.06■□□□□ 0.8
UBR4-208ENST00000459947 DNAJC5BQ9UF47 199 aa20.01■□□□□ 0.79
UBR4-208ENST00000459947 BAZ1AQ9NRL2 1556 aaPredicted RBP20■□□□□ 0.79
UBR4-208ENST00000459947 SMARCA4P51532 1647 aa19.95■□□□□ 0.78
UBR4-208ENST00000459947 CECR2Q9BXF3 1484 aa19.93■□□□□ 0.78
UBR4-208ENST00000459947 SMARCA2P51531 1590 aa19.89■□□□□ 0.77
UBR4-208ENST00000459947 NCAPD3P42695 1498 aa19.82■□□□□ 0.76
UBR4-208ENST00000459947 PEG3Q9GZU2 1588 aa19.81■□□□□ 0.76
UBR4-208ENST00000459947 HMGXB3Q12766 1538 aa19.79■□□□□ 0.76
UBR4-208ENST00000459947 ATAD2BQ9ULI0 1458 aa19.78■□□□□ 0.76
UBR4-208ENST00000459947 MROH2BQ7Z745 1585 aa19.73■□□□□ 0.75
UBR4-208ENST00000459947 BAZ1BQ9UIG0 1483 aaKnown RBP19.67■□□□□ 0.74
UBR4-208ENST00000459947 RSF1Q96T23 1441 aaPredicted RBP19.57■□□□□ 0.72
UBR4-208ENST00000459947 WIZO95785 1651 aa19.51■□□□□ 0.71
UBR4-208ENST00000459947 TOP2AP11388 1531 aaKnown RBP19.46■□□□□ 0.71
UBR4-208ENST00000459947 LAMC3Q9Y6N6 1575 aa19.32■□□□□ 0.68
UBR4-208ENST00000459947 CADPSQ9ULU8 1353 aa19.21■□□□□ 0.67
UBR4-208ENST00000459947 PDS5BQ9NTI5 1447 aa19.18■□□□□ 0.66
UBR4-208ENST00000459947 ERCC6Q03468 1493 aa19.16■□□□□ 0.66
UBR4-208ENST00000459947 CFTRP13569 1480 aa19.12■□□□□ 0.65
UBR4-208ENST00000459947 CCDC88BA6NC98 1476 aa19.12■□□□□ 0.65
UBR4-208ENST00000459947 NESP48681 1621 aa19.1■□□□□ 0.65
UBR4-208ENST00000459947 PRDM2Q13029 1718 aa19.09■□□□□ 0.65
UBR4-208ENST00000459947 CUX2O14529 1486 aa19.02■□□□□ 0.64
UBR4-208ENST00000459947 SUPT5HO00267 1087 aaKnown RBP19.02■□□□□ 0.64
UBR4-208ENST00000459947 CEP164Q9UPV0 1460 aa18.99■□□□□ 0.63
UBR4-208ENST00000459947 KIF21AQ7Z4S6 1674 aa18.98■□□□□ 0.63
UBR4-208ENST00000459947 FANCD2Q9BXW9 1451 aa18.97■□□□□ 0.63
UBR4-208ENST00000459947 MRC2Q9UBG0 1479 aa18.95■□□□□ 0.62
UBR4-208ENST00000459947 THOC2Q8NI27 1593 aaKnown RBP18.94■□□□□ 0.62
UBR4-208ENST00000459947 WDR62O43379 1518 aa18.87■□□□□ 0.61
UBR4-208ENST00000459947 ABCC8Q09428 1581 aa18.87■□□□□ 0.61
UBR4-208ENST00000459947 DNMBPQ6XZF7 1577 aa18.74■□□□□ 0.59
UBR4-208ENST00000459947 URB2Q14146 1524 aaKnown RBP18.72■□□□□ 0.59
UBR4-208ENST00000459947 TOPBP1Q92547 1522 aa18.68■□□□□ 0.58
UBR4-208ENST00000459947 IFT140Q96RY7 1462 aa18.62■□□□□ 0.57
UBR4-208ENST00000459947 WDR97A6NE52 1622 aa18.56■□□□□ 0.56
UBR4-208ENST00000459947 CUX1P39880 1505 aa18.53■□□□□ 0.56
UBR4-208ENST00000459947 WRNQ14191 1432 aaPredicted RBP eCLIP18.51■□□□□ 0.55
UBR4-208ENST00000459947 BIVM-ERCC5R4GMW8 1640 aa18.51■□□□□ 0.55
UBR4-208ENST00000459947 POLA1P09884 1462 aaPredicted RBP18.5■□□□□ 0.55
UBR4-208ENST00000459947 TOP2BQ02880 1626 aa18.49■□□□□ 0.55
UBR4-208ENST00000459947 FGD5Q6ZNL6 1462 aa18.48■□□□□ 0.55
UBR4-208ENST00000459947 TARBP1Q13395 1621 aaKnown RBP18.46■□□□□ 0.55
UBR4-208ENST00000459947 SOGA1O94964 1423 aa18.45■□□□□ 0.54
UBR4-208ENST00000459947 SYNJ1O43426 1573 aa18.38■□□□□ 0.53
UBR4-208ENST00000459947 ABCA10Q8WWZ4 1543 aa18.38■□□□□ 0.53
UBR4-208ENST00000459947 EIF4G3O43432 1585 aaKnown RBP18.37■□□□□ 0.53
UBR4-208ENST00000459947 RAD54L2Q9Y4B4 1467 aa18.34■□□□□ 0.53
UBR4-208ENST00000459947 ZNF608Q9ULD9 1512 aaPredicted RBP18.32■□□□□ 0.52
UBR4-208ENST00000459947 GRIN2BQ13224 1484 aa18.29■□□□□ 0.52
UBR4-208ENST00000459947 ABCA5Q8WWZ7 1642 aa18.27■□□□□ 0.52
UBR4-208ENST00000459947 MAGI1Q96QZ7 1491 aaPredicted RBP18.27■□□□□ 0.51
UBR4-208ENST00000459947 GAPVD1Q14C86 1478 aa18.26■□□□□ 0.51
UBR4-208ENST00000459947 AQRO60306 1485 aaKnown RBP eCLIP18.25■□□□□ 0.514e-7■■■■■ 29.2
UBR4-208ENST00000459947 TDRD9Q8NDG6 1382 aaKnown RBP18.23■□□□□ 0.51
UBR4-208ENST00000459947 PBRM1Q86U86 1689 aa18.23■□□□□ 0.51
UBR4-208ENST00000459947 ERICH3Q5RHP9 1530 aa18.2■□□□□ 0.5
UBR4-208ENST00000459947 KIF27Q86VH2 1401 aa18.18■□□□□ 0.5
UBR4-208ENST00000459947 SNAPC4Q5SXM2 1469 aa18.17■□□□□ 0.5
UBR4-208ENST00000459947 SYNJ2O15056 1496 aa18.15■□□□□ 0.5
UBR4-208ENST00000459947 OSCARQ8IYS5 282 aa18.14■□□□□ 0.49
UBR4-208ENST00000459947 DNAJC5Q9H3Z4 198 aa18.14■□□□□ 0.49
UBR4-208ENST00000459947 CHD1O14646 1710 aa18.11■□□□□ 0.49
UBR4-208ENST00000459947 ADAMTS12P58397 1594 aa18.1■□□□□ 0.49
UBR4-208ENST00000459947 FHAD1B1AJZ9 1412 aa18.1■□□□□ 0.49
UBR4-208ENST00000459947 TRIM41Q8WV44 630 aa18.1■□□□□ 0.49
UBR4-208ENST00000459947 CUL7Q14999 1698 aa18.09■□□□□ 0.49
UBR4-208ENST00000459947 CHMP7Q8WUX9 453 aaPredicted RBP18.07■□□□□ 0.48
UBR4-208ENST00000459947 EEA1Q15075 1411 aa18.01■□□□□ 0.47
UBR4-208ENST00000459947 GRIN2AQ12879 1464 aa18.01■□□□□ 0.47
UBR4-208ENST00000459947 FBLN2P98095 1184 aa18■□□□□ 0.47
UBR4-208ENST00000459947 IGF1RP08069 1367 aa17.97■□□□□ 0.47
UBR4-208ENST00000459947 CLASP1Q7Z460 1538 aa17.96■□□□□ 0.47
UBR4-208ENST00000459947 NUP160Q12769 1436 aa17.95■□□□□ 0.46
UBR4-208ENST00000459947 CARMIL1Q5VZK9 1371 aa17.92■□□□□ 0.46
UBR4-208ENST00000459947 CHIC1Q5VXU3 224 aa17.88■□□□□ 0.45
UBR4-208ENST00000459947 RAPGEF2Q9Y4G8 1499 aa17.87■□□□□ 0.45
UBR4-208ENST00000459947 CEP170Q5SW79 1584 aa17.85■□□□□ 0.45
UBR4-208ENST00000459947 KIAA0586Q9BVV6 1533 aa17.82■□□□□ 0.44
UBR4-208ENST00000459947 ARHGEF11O15085 1522 aa17.82■□□□□ 0.44
UBR4-208ENST00000459947 RUSC2Q8N2Y8 1516 aa17.81■□□□□ 0.44
UBR4-208ENST00000459947 SHROOM2Q13796 1616 aa17.81■□□□□ 0.44
UBR4-208ENST00000459947 RIMBP3CA6NJZ7 1639 aa17.81■□□□□ 0.44
UBR4-208ENST00000459947 RIMBP3BA6NNM3 1639 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms