RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 UHRF1BP1Q6BDS2 1440 aa9.8□□□□□ -0.84
USP54-202ENST00000413442 DAPK1P53355 1430 aa9.79□□□□□ -0.84
USP54-202ENST00000413442 ERBINQ96RT1 1412 aa9.79□□□□□ -0.84
USP54-202ENST00000413442 LMTK3Q96Q04 1460 aa9.79□□□□□ -0.84
USP54-202ENST00000413442 CEBPAP49715 358 aaPredicted RBP9.78□□□□□ -0.84
USP54-202ENST00000413442 ACIN1Q9UKV3 1341 aaKnown RBP9.78□□□□□ -0.84
USP54-202ENST00000413442 CROCC2H7BZ55 1655 aa9.77□□□□□ -0.84
USP54-202ENST00000413442 ZC3H13Q5T200 1668 aaKnown RBP9.77□□□□□ -0.84
USP54-202ENST00000413442 NCOA1Q15788 1441 aa9.77□□□□□ -0.85
USP54-202ENST00000413442 ADGRL2O95490 1459 aa9.77□□□□□ -0.85
USP54-202ENST00000413442 CLTCQ00610 1675 aaKnown RBP9.77□□□□□ -0.85
USP54-202ENST00000413442 KANK1Q14678 1352 aa9.76□□□□□ -0.85
USP54-202ENST00000413442 KIF15Q9NS87 1388 aa9.76□□□□□ -0.85
USP54-202ENST00000413442 RNF17Q9BXT8 1623 aaKnown RBP9.76□□□□□ -0.85
USP54-202ENST00000413442 KDM5DQ9BY66 1539 aa9.76□□□□□ -0.85
USP54-202ENST00000413442 ROCK1Q13464 1354 aa9.75□□□□□ -0.85
USP54-202ENST00000413442 FAM50AQ14320 339 aaKnown RBP9.75□□□□□ -0.85
USP54-202ENST00000413442 RRP7BPQ9NSQ0 103 aa9.75□□□□□ -0.85
USP54-202ENST00000413442 PTPRKQ15262 1439 aa9.74□□□□□ -0.85
USP54-202ENST00000413442 ARHGAP31Q2M1Z3 1444 aa9.74□□□□□ -0.85
USP54-202ENST00000413442 PKD2Q13563 968 aa9.74□□□□□ -0.85
USP54-202ENST00000413442 PZPP20742 1482 aa9.73□□□□□ -0.85
USP54-202ENST00000413442 THEMISQ8N1K5 641 aaPredicted RBP9.73□□□□□ -0.85
USP54-202ENST00000413442 PLPPR3Q6T4P5 718 aa9.72□□□□□ -0.85
USP54-202ENST00000413442 PTPRTO14522 1441 aa9.72□□□□□ -0.85
USP54-202ENST00000413442 NLRP1Q9C000 1473 aa9.72□□□□□ -0.85
USP54-202ENST00000413442 DEPDC5O75140 1603 aa9.71□□□□□ -0.85
USP54-202ENST00000413442 ANKRD50Q9ULJ7 1429 aa9.71□□□□□ -0.86
USP54-202ENST00000413442 PLA2R1Q13018 1463 aa9.71□□□□□ -0.86
USP54-202ENST00000413442 ZNF142P52746 1687 aaPredicted RBP9.71□□□□□ -0.86
USP54-202ENST00000413442 CHIC2Q9UKJ5 165 aa9.7□□□□□ -0.86
USP54-202ENST00000413442 TNRQ92752 1358 aa9.7□□□□□ -0.86
USP54-202ENST00000413442 RRBP1Q9P2E9 1410 aaKnown RBP9.7□□□□□ -0.86
USP54-202ENST00000413442 A2ML1A8K2U0 1454 aa9.7□□□□□ -0.86
USP54-202ENST00000413442 PRDM15P57071 1507 aaPredicted RBP9.7□□□□□ -0.86
USP54-202ENST00000413442 LMTK2Q8IWU2 1503 aa9.7□□□□□ -0.86
USP54-202ENST00000413442 HSPA2P54652 639 aa9.69□□□□□ -0.86
USP54-202ENST00000413442 ABCC3O15438 1527 aa9.68□□□□□ -0.86
USP54-202ENST00000413442 RPRD2Q5VT52 1461 aaKnown RBP9.68□□□□□ -0.86
USP54-202ENST00000413442 SLC52A1Q9NWF4 448 aa9.68□□□□□ -0.86
USP54-202ENST00000413442 STRCQ7RTU9 1775 aa9.68□□□□□ -0.86
USP54-202ENST00000413442 SPATA31D1Q6ZQQ2 1576 aa9.67□□□□□ -0.86
USP54-202ENST00000413442 VWDEQ8N2E2 1590 aa9.67□□□□□ -0.86
USP54-202ENST00000413442 HDGFP51858 240 aaKnown RBP9.67□□□□□ -0.86
USP54-202ENST00000413442 ANKLE2Q86XL3 938 aa9.67□□□□□ -0.86
USP54-202ENST00000413442 MROH1Q8NDA8 1641 aa9.67□□□□□ -0.86
USP54-202ENST00000413442 MYO3AQ8NEV4 1616 aa9.67□□□□□ -0.86
USP54-202ENST00000413442 CEP170BQ9Y4F5 1589 aaPredicted RBP9.67□□□□□ -0.86
USP54-202ENST00000413442 FBXO31Q5XUX0 539 aaPredicted RBP9.66□□□□□ -0.86
USP54-202ENST00000413442 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.66□□□□□ -0.86
USP54-202ENST00000413442 KDM5AP29375 1690 aaKnown RBP9.66□□□□□ -0.86
USP54-202ENST00000413442 CAMSAP1Q5T5Y3 1602 aa9.66□□□□□ -0.86
USP54-202ENST00000413442 UGGT1Q9NYU2 1555 aa9.64□□□□□ -0.87
USP54-202ENST00000413442 CEP152O94986 1710 aa9.64□□□□□ -0.87
USP54-202ENST00000413442 ERVK-7P63135 1459 aa9.64□□□□□ -0.87
USP54-202ENST00000413442 CFAP65Q6ZU64 1925 aaKnown RBP9.64□□□□□ -0.87
USP54-202ENST00000413442 FBXO41Q8TF61 875 aa9.63□□□□□ -0.87
USP54-202ENST00000413442 TET3O43151 1660 aa9.62□□□□□ -0.87
USP54-202ENST00000413442 MED14O60244 1454 aa9.62□□□□□ -0.87
USP54-202ENST00000413442 IQSEC2Q5JU85 1478 aa9.62□□□□□ -0.87
USP54-202ENST00000413442 CERKQ8TCT0 537 aa9.62□□□□□ -0.87
USP54-202ENST00000413442 EID1Q9Y6B2 187 aa9.62□□□□□ -0.87
USP54-202ENST00000413442 UNC13BO14795 1591 aa9.62□□□□□ -0.87
USP54-202ENST00000413442 GCC2Q8IWJ2 1684 aa9.61□□□□□ -0.87
USP54-202ENST00000413442 STAG3Q9UJ98 1225 aa9.61□□□□□ -0.87
USP54-202ENST00000413442 NOS1P29475 1434 aa9.61□□□□□ -0.87
USP54-202ENST00000413442 EFCAB6Q5THR3 1501 aa9.61□□□□□ -0.87
USP54-202ENST00000413442 ITGAEP38570 1179 aa9.6□□□□□ -0.87
USP54-202ENST00000413442 PPARGC1BQ86YN6 1023 aaKnown RBP9.6□□□□□ -0.87
USP54-202ENST00000413442 NUP155O75694 1391 aa9.6□□□□□ -0.87
USP54-202ENST00000413442 IQGAP3Q86VI3 1631 aa9.6□□□□□ -0.87
USP54-202ENST00000413442 POLR1AO95602 1720 aaPredicted RBP9.59□□□□□ -0.87
USP54-202ENST00000413442 NCKAP5LQ9HCH0 1330 aa9.59□□□□□ -0.87
USP54-202ENST00000413442 IDI1Q13907 227 aa9.59□□□□□ -0.87
USP54-202ENST00000413442 UBR1Q8IWV7 1749 aa9.59□□□□□ -0.87
USP54-202ENST00000413442 HFM1A2PYH4 1435 aa9.58□□□□□ -0.88
USP54-202ENST00000413442 SLIT1O75093 1534 aa9.58□□□□□ -0.88
USP54-202ENST00000413442 HRCP23327 699 aa9.58□□□□□ -0.88
USP54-202ENST00000413442 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP54-202ENST00000413442 NAIPQ13075 1403 aa9.57□□□□□ -0.88
USP54-202ENST00000413442 TXNDC2Q86VQ3 553 aa9.57□□□□□ -0.88
USP54-202ENST00000413442 ARHGAP23Q9P227 1491 aa9.57□□□□□ -0.88
USP54-202ENST00000413442 TMEM2Q9UHN6 1383 aa9.56□□□□□ -0.88
USP54-202ENST00000413442 NPHP4O75161 1426 aaPredicted RBP9.56□□□□□ -0.88
USP54-202ENST00000413442 CPS1P31327 1500 aa9.55□□□□□ -0.88
USP54-202ENST00000413442 SCAF11Q99590 1463 aaKnown RBP9.54□□□□□ -0.88
USP54-202ENST00000413442 PIK3C2BO00750 1634 aa9.54□□□□□ -0.88
USP54-202ENST00000413442 ILDR1Q86SU0 546 aaPredicted RBP9.54□□□□□ -0.88
USP54-202ENST00000413442 E9PCH4 1651 aa9.54□□□□□ -0.88
USP54-202ENST00000413442 LTBP4Q8N2S1 1624 aa9.53□□□□□ -0.88
USP54-202ENST00000413442 IQGAP1P46940 1657 aa9.53□□□□□ -0.88
USP54-202ENST00000413442 SYNMO15061 1565 aa9.52□□□□□ -0.89
USP54-202ENST00000413442 TRIM52Q96A61 297 aa9.52□□□□□ -0.89
USP54-202ENST00000413442 NEURL4Q96JN8 1562 aa9.52□□□□□ -0.89
USP54-202ENST00000413442 ADGRB3O60242 1522 aa9.51□□□□□ -0.89
USP54-202ENST00000413442 LTKP29376 864 aa9.51□□□□□ -0.89
USP54-202ENST00000413442 SLC4A1APQ9BWU0 796 aaKnown RBP9.51□□□□□ -0.89
USP54-202ENST00000413442 TBX22Q9Y458 520 aa9.51□□□□□ -0.89
USP54-202ENST00000413442 TMEM131LA2VDJ0 1609 aa9.51□□□□□ -0.89
USP54-202ENST00000413442 RPGRIP1LQ68CZ1 1315 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms