RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 TIAM1Q13009 1591 aa19.5■□□□□ 0.71
SPTLC1P3-201ENST00000403408 PIP4K2BP78356 416 aa19.49■□□□□ 0.71
SPTLC1P3-201ENST00000403408 POLR1AO95602 1720 aaPredicted RBP19.48■□□□□ 0.71
SPTLC1P3-201ENST00000403408 SHANK2Q9UPX8 1470 aa19.48■□□□□ 0.71
SPTLC1P3-201ENST00000403408 DHX29Q7Z478 1369 aaKnown RBP19.47■□□□□ 0.71
SPTLC1P3-201ENST00000403408 VWDEQ8N2E2 1590 aa19.47■□□□□ 0.71
SPTLC1P3-201ENST00000403408 TNRQ92752 1358 aa19.45■□□□□ 0.7
SPTLC1P3-201ENST00000403408 SCAF1Q9H7N4 1312 aaKnown RBP19.45■□□□□ 0.7
SPTLC1P3-201ENST00000403408 RTEL1-TNFRSF6BF6WH68 1400 aa19.44■□□□□ 0.7
SPTLC1P3-201ENST00000403408 CPS1P31327 1500 aa19.44■□□□□ 0.7
SPTLC1P3-201ENST00000403408 MTUS2Q5JR59 1369 aa19.44■□□□□ 0.7
SPTLC1P3-201ENST00000403408 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.44■□□□□ 0.7
SPTLC1P3-201ENST00000403408 PZPP20742 1482 aa19.43■□□□□ 0.7
SPTLC1P3-201ENST00000403408 KIF3BO15066 747 aa19.41■□□□□ 0.7
SPTLC1P3-201ENST00000403408 STRCP1A6NGW2 1772 aa19.41■□□□□ 0.7
SPTLC1P3-201ENST00000403408 TOM1O60784 492 aa19.4■□□□□ 0.7
SPTLC1P3-201ENST00000403408 KDM5DQ9BY66 1539 aa19.39■□□□□ 0.69
SPTLC1P3-201ENST00000403408 MED14O60244 1454 aa19.38■□□□□ 0.69
SPTLC1P3-201ENST00000403408 CEP162Q5TB80 1403 aa19.38■□□□□ 0.69
SPTLC1P3-201ENST00000403408 MIA2Q96PC5 1412 aa19.38■□□□□ 0.69
SPTLC1P3-201ENST00000403408 EHBP1L1Q8N3D4 1523 aa19.36■□□□□ 0.69
SPTLC1P3-201ENST00000403408 NPHP4O75161 1426 aaPredicted RBP19.36■□□□□ 0.69
SPTLC1P3-201ENST00000403408 ANKLE2Q86XL3 938 aa19.36■□□□□ 0.69
SPTLC1P3-201ENST00000403408 DEPDC5O75140 1603 aa19.35■□□□□ 0.69
SPTLC1P3-201ENST00000403408 CCDC141Q6ZP82 1450 aa19.35■□□□□ 0.69
SPTLC1P3-201ENST00000403408 WASHC2CQ9Y4E1 1318 aa19.34■□□□□ 0.69
SPTLC1P3-201ENST00000403408 UGGT1Q9NYU2 1555 aa19.34■□□□□ 0.69
SPTLC1P3-201ENST00000403408 CAMSAP2Q08AD1 1489 aa19.34■□□□□ 0.69
SPTLC1P3-201ENST00000403408 NLRP1Q9C000 1473 aa19.33■□□□□ 0.68
SPTLC1P3-201ENST00000403408 LRRC7Q96NW7 1537 aa19.32■□□□□ 0.68
SPTLC1P3-201ENST00000403408 FAM135AQ9P2D6 1515 aa19.32■□□□□ 0.68
SPTLC1P3-201ENST00000403408 THEMISQ8N1K5 641 aaPredicted RBP19.32■□□□□ 0.68
SPTLC1P3-201ENST00000403408 IQGAP1P46940 1657 aa19.3■□□□□ 0.68
SPTLC1P3-201ENST00000403408 NCOA2Q15596 1464 aa19.29■□□□□ 0.68
SPTLC1P3-201ENST00000403408 RGS17Q9UGC6 210 aaPredicted RBP19.28■□□□□ 0.68
SPTLC1P3-201ENST00000403408 ABCC3O15438 1527 aa19.27■□□□□ 0.68
SPTLC1P3-201ENST00000403408 ZC3H13Q5T200 1668 aaKnown RBP19.27■□□□□ 0.67
SPTLC1P3-201ENST00000403408 MROH1Q8NDA8 1641 aa19.25■□□□□ 0.67
SPTLC1P3-201ENST00000403408 RNF17Q9BXT8 1623 aaKnown RBP19.25■□□□□ 0.67
SPTLC1P3-201ENST00000403408 CFAP65Q6ZU64 1925 aaKnown RBP19.25■□□□□ 0.67
SPTLC1P3-201ENST00000403408 ARHGEF5Q12774 1597 aa19.25■□□□□ 0.67
SPTLC1P3-201ENST00000403408 ERVK-7P63135 1459 aa19.24■□□□□ 0.67
SPTLC1P3-201ENST00000403408 FOXD1Q16676 465 aa19.23■□□□□ 0.67
SPTLC1P3-201ENST00000403408 XIRP1Q702N8 1843 aaKnown RBP19.23■□□□□ 0.67
SPTLC1P3-201ENST00000403408 RSPH4AQ5TD94 716 aa19.22■□□□□ 0.67
SPTLC1P3-201ENST00000403408 SYNMO15061 1565 aa19.21■□□□□ 0.67
SPTLC1P3-201ENST00000403408 LTKP29376 864 aa19.21■□□□□ 0.67
SPTLC1P3-201ENST00000403408 UBR1Q8IWV7 1749 aa19.21■□□□□ 0.67
SPTLC1P3-201ENST00000403408 CEP152O94986 1710 aa19.19■□□□□ 0.66
SPTLC1P3-201ENST00000403408 MAST1Q9Y2H9 1570 aa19.18■□□□□ 0.66
SPTLC1P3-201ENST00000403408 ARHGAP23Q9P227 1491 aa19.17■□□□□ 0.66
SPTLC1P3-201ENST00000403408 TSPY4P0CV99 314 aa19.17■□□□□ 0.66
SPTLC1P3-201ENST00000403408 TSPY10P0CW01 314 aa19.17■□□□□ 0.66
SPTLC1P3-201ENST00000403408 SCAF11Q99590 1463 aaKnown RBP19.16■□□□□ 0.66
SPTLC1P3-201ENST00000403408 SLIT1O75093 1534 aa19.14■□□□□ 0.65
SPTLC1P3-201ENST00000403408 EIF2AK4Q9P2K8 1649 aaKnown RBP19.14■□□□□ 0.65
SPTLC1P3-201ENST00000403408 POTEAQ6S8J7 498 aa19.11■□□□□ 0.65
SPTLC1P3-201ENST00000403408 TXNDC2Q86VQ3 553 aa19.11■□□□□ 0.65
SPTLC1P3-201ENST00000403408 LRRC9Q6ZRR7 1453 aa19.1■□□□□ 0.65
SPTLC1P3-201ENST00000403408 KANK4Q5T7N3 995 aaPredicted RBP19.1■□□□□ 0.65
SPTLC1P3-201ENST00000403408 ARHGAP31Q2M1Z3 1444 aa19.07■□□□□ 0.64
SPTLC1P3-201ENST00000403408 FAM135BQ49AJ0 1406 aa19.07■□□□□ 0.64
SPTLC1P3-201ENST00000403408 PIK3C2BO00750 1634 aa19.07■□□□□ 0.64
SPTLC1P3-201ENST00000403408 RBM33Q96EV2 1170 aaKnown RBP19.06■□□□□ 0.64
SPTLC1P3-201ENST00000403408 DUOX2Q9NRD8 1548 aa19.05■□□□□ 0.64
SPTLC1P3-201ENST00000403408 TMEM94Q12767 1356 aa19.05■□□□□ 0.64
SPTLC1P3-201ENST00000403408 PRDM15P57071 1507 aaPredicted RBP19.05■□□□□ 0.64
SPTLC1P3-201ENST00000403408 MAP3K1Q13233 1512 aa19.05■□□□□ 0.64
SPTLC1P3-201ENST00000403408 TMEM2Q9UHN6 1383 aa19.04■□□□□ 0.64
SPTLC1P3-201ENST00000403408 TET3O43151 1660 aa19.02■□□□□ 0.64
SPTLC1P3-201ENST00000403408 ROBO1Q9Y6N7 1651 aa19.01■□□□□ 0.63
SPTLC1P3-201ENST00000403408 MYOM3Q5VTT5 1437 aa19.01■□□□□ 0.63
SPTLC1P3-201ENST00000403408 KIF15Q9NS87 1388 aa19.01■□□□□ 0.63
SPTLC1P3-201ENST00000403408 ABCC5O15440 1437 aa19■□□□□ 0.63
SPTLC1P3-201ENST00000403408 VPS8Q8N3P4 1428 aa19■□□□□ 0.63
SPTLC1P3-201ENST00000403408 KCNA6P17658 529 aa18.99■□□□□ 0.63
SPTLC1P3-201ENST00000403408 IDI1Q13907 227 aa18.99■□□□□ 0.63
SPTLC1P3-201ENST00000403408 SLC26A8Q96RN1 970 aa18.99■□□□□ 0.63
SPTLC1P3-201ENST00000403408 RRP7BPQ9NSQ0 103 aa18.99■□□□□ 0.63
SPTLC1P3-201ENST00000403408 SETD1AO15047 1707 aaKnown RBP18.98■□□□□ 0.63
SPTLC1P3-201ENST00000403408 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.98■□□□□ 0.63
SPTLC1P3-201ENST00000403408 EID1Q9Y6B2 187 aa18.98■□□□□ 0.63
SPTLC1P3-201ENST00000403408 CROCC2H7BZ55 1655 aa18.96■□□□□ 0.63
SPTLC1P3-201ENST00000403408 ERBINQ96RT1 1412 aa18.96■□□□□ 0.63
SPTLC1P3-201ENST00000403408 EFCAB6Q5THR3 1501 aa18.95■□□□□ 0.62
SPTLC1P3-201ENST00000403408 PROSER2Q86WR7 435 aaPredicted RBP18.94■□□□□ 0.62
SPTLC1P3-201ENST00000403408 KDM5AP29375 1690 aaKnown RBP18.94■□□□□ 0.62
SPTLC1P3-201ENST00000403408 NWD1Q149M9 1564 aa18.93■□□□□ 0.62
SPTLC1P3-201ENST00000403408 LOC105371045A0A1W2PR82 267 aa18.93■□□□□ 0.62
SPTLC1P3-201ENST00000403408 LMTK2Q8IWU2 1503 aa18.93■□□□□ 0.62
SPTLC1P3-201ENST00000403408 NOS1P29475 1434 aa18.92■□□□□ 0.62
SPTLC1P3-201ENST00000403408 SRCAPQ6ZRS2 3230 aa18.9■□□□□ 0.62
SPTLC1P3-201ENST00000403408 STAG3Q9UJ98 1225 aa18.9■□□□□ 0.62
SPTLC1P3-201ENST00000403408 DAPK1P53355 1430 aa18.9■□□□□ 0.62
SPTLC1P3-201ENST00000403408 PTPN23Q9H3S7 1636 aa18.89■□□□□ 0.62
SPTLC1P3-201ENST00000403408 ADGRB3O60242 1522 aa18.89■□□□□ 0.61
SPTLC1P3-201ENST00000403408 PHLPP1O60346 1717 aa18.88■□□□□ 0.61
SPTLC1P3-201ENST00000403408 NKTRP30414 1462 aaKnown RBP18.88■□□□□ 0.61
SPTLC1P3-201ENST00000403408 LRP6O75581 1613 aa18.87■□□□□ 0.61
SPTLC1P3-201ENST00000403408 SLAIN2Q9P270 581 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms