RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 NUDCQ9Y266 331 aa13.26□□□□□ -0.29
PTCHD4-202ENST00000398738 HFM1A2PYH4 1435 aa13.24□□□□□ -0.29
PTCHD4-202ENST00000398738 FGD5Q6ZNL6 1462 aa13.24□□□□□ -0.29
PTCHD4-202ENST00000398738 FMN1Q68DA7 1419 aa13.24□□□□□ -0.29
PTCHD4-202ENST00000398738 EIF4G3O43432 1585 aaKnown RBP13.24□□□□□ -0.29
PTCHD4-202ENST00000398738 MAP3K1Q13233 1512 aa13.23□□□□□ -0.29
PTCHD4-202ENST00000398738 SPDYE1Q8NFV5 336 aaPredicted RBP13.23□□□□□ -0.29
PTCHD4-202ENST00000398738 EXOC6Q8TAG9 804 aa13.23□□□□□ -0.29
PTCHD4-202ENST00000398738 FAM212AQ96EL1 285 aa13.23□□□□□ -0.29
PTCHD4-202ENST00000398738 PCDHB8Q9UN66 801 aa13.22□□□□□ -0.29
PTCHD4-202ENST00000398738 PCDHB13Q9Y5F0 798 aa13.22□□□□□ -0.29
PTCHD4-202ENST00000398738 ABCA5Q8WWZ7 1642 aa13.21□□□□□ -0.29
PTCHD4-202ENST00000398738 SLC4A3P48751 1232 aa13.2□□□□□ -0.3
PTCHD4-202ENST00000398738 ABCA10Q8WWZ4 1543 aa13.2□□□□□ -0.3
PTCHD4-202ENST00000398738 EIF5BO60841 1220 aaKnown RBP13.2□□□□□ -0.3
PTCHD4-202ENST00000398738 GSE1Q14687 1217 aa13.19□□□□□ -0.3
PTCHD4-202ENST00000398738 ZNF608Q9ULD9 1512 aaPredicted RBP13.19□□□□□ -0.3
PTCHD4-202ENST00000398738 RAD54L2Q9Y4B4 1467 aa13.18□□□□□ -0.3
PTCHD4-202ENST00000398738 CASKIN1Q8WXD9 1431 aa13.18□□□□□ -0.3
PTCHD4-202ENST00000398738 PBRM1Q86U86 1689 aa13.18□□□□□ -0.3
PTCHD4-202ENST00000398738 PLIN1O60240 522 aa13.17□□□□□ -0.3
PTCHD4-202ENST00000398738 PDE4AP27815 886 aa13.17□□□□□ -0.3
PTCHD4-202ENST00000398738 DNAJC5Q9H3Z4 198 aa13.17□□□□□ -0.3
PTCHD4-202ENST00000398738 PTPN23Q9H3S7 1636 aa13.16□□□□□ -0.3
PTCHD4-202ENST00000398738 NCOA2Q15596 1464 aa13.16□□□□□ -0.3
PTCHD4-202ENST00000398738 BRPF3Q9ULD4 1205 aa13.16□□□□□ -0.3
PTCHD4-202ENST00000398738 NCOA1Q15788 1441 aa13.16□□□□□ -0.3
PTCHD4-202ENST00000398738 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.15□□□□□ -0.3
PTCHD4-202ENST00000398738 KDM5BQ9UGL1 1544 aa13.15□□□□□ -0.3
PTCHD4-202ENST00000398738 MYOM3Q5VTT5 1437 aa13.15□□□□□ -0.3
PTCHD4-202ENST00000398738 FYCO1Q9BQS8 1478 aa13.15□□□□□ -0.3
PTCHD4-202ENST00000398738 SMG6Q86US8 1419 aaKnown RBP13.14□□□□□ -0.31
PTCHD4-202ENST00000398738 AKT1S1Q96B36 256 aa13.13□□□□□ -0.31
PTCHD4-202ENST00000398738 PNISRQ8TF01 805 aaKnown RBP13.12□□□□□ -0.31
PTCHD4-202ENST00000398738 ZNF644Q9H582 1327 aaPredicted RBP13.12□□□□□ -0.31
PTCHD4-202ENST00000398738 ZNF777Q9ULD5 760 aaPredicted RBP13.12□□□□□ -0.31
PTCHD4-202ENST00000398738 RRP1P56182 461 aaKnown RBP13.11□□□□□ -0.31
PTCHD4-202ENST00000398738 DAXXQ9UER7 740 aaPredicted RBP13.11□□□□□ -0.31
PTCHD4-202ENST00000398738 RCAN3Q9UKA8 241 aa13.11□□□□□ -0.31
PTCHD4-202ENST00000398738 TDRD9Q8NDG6 1382 aaKnown RBP13.11□□□□□ -0.31
PTCHD4-202ENST00000398738 CDCA7LQ96GN5 454 aa13.11□□□□□ -0.31
PTCHD4-202ENST00000398738 VGFO15240 615 aaPredicted RBP13.09□□□□□ -0.31
PTCHD4-202ENST00000398738 CFAP43Q8NDM7 1665 aa13.09□□□□□ -0.31
PTCHD4-202ENST00000398738 KCNV2Q8TDN2 545 aa13.09□□□□□ -0.31
PTCHD4-202ENST00000398738 CHD1O14646 1710 aa13.09□□□□□ -0.31
PTCHD4-202ENST00000398738 TCERG1O14776 1098 aaKnown RBP13.08□□□□□ -0.32
PTCHD4-202ENST00000398738 DENND4BO75064 1496 aaPredicted RBP13.08□□□□□ -0.32
PTCHD4-202ENST00000398738 PPP1R37O75864 691 aa13.08□□□□□ -0.32
PTCHD4-202ENST00000398738 BACH2Q9BYV9 841 aa13.07□□□□□ -0.32
PTCHD4-202ENST00000398738 CARD11Q9BXL7 1154 aa13.07□□□□□ -0.32
PTCHD4-202ENST00000398738 MAGI1Q96QZ7 1491 aaPredicted RBP13.06□□□□□ -0.32
PTCHD4-202ENST00000398738 USP47Q96K76 1375 aa13.06□□□□□ -0.32
PTCHD4-202ENST00000398738 RNF123Q5XPI4 1314 aa13.06□□□□□ -0.32
PTCHD4-202ENST00000398738 GRIN2BQ13224 1484 aa13.05□□□□□ -0.32
PTCHD4-202ENST00000398738 PPM1GO15355 546 aaPredicted RBP13.05□□□□□ -0.32
PTCHD4-202ENST00000398738 KDM6BO15054 1643 aa13.05□□□□□ -0.32
PTCHD4-202ENST00000398738 DHX29Q7Z478 1369 aaKnown RBP13.04□□□□□ -0.32
PTCHD4-202ENST00000398738 GAPVD1Q14C86 1478 aa13.04□□□□□ -0.32
PTCHD4-202ENST00000398738 ST20-MTHFSA0A0A6YYL1 179 aa13.04□□□□□ -0.32
PTCHD4-202ENST00000398738 ANKRD30BQ9BXX2 1392 aa13.04□□□□□ -0.32
PTCHD4-202ENST00000398738 ADAMTS12P58397 1594 aa13.04□□□□□ -0.32
PTCHD4-202ENST00000398738 CC2D1BQ5T0F9 858 aaKnown RBP13.03□□□□□ -0.32
PTCHD4-202ENST00000398738 CRBNQ96SW2 442 aa13.03□□□□□ -0.32
PTCHD4-202ENST00000398738 ARXQ96QS3 562 aa13.03□□□□□ -0.32
PTCHD4-202ENST00000398738 NFKBIBQ15653 356 aa13.02□□□□□ -0.32
PTCHD4-202ENST00000398738 FRAT1Q92837 279 aaPredicted RBP13.02□□□□□ -0.33
PTCHD4-202ENST00000398738 RGS3P49796 1198 aa13.01□□□□□ -0.33
PTCHD4-202ENST00000398738 SNAPC4Q5SXM2 1469 aa13.01□□□□□ -0.33
PTCHD4-202ENST00000398738 RBM42Q9BTD8 480 aaKnown RBP13□□□□□ -0.33
PTCHD4-202ENST00000398738 MFRPQ9BY79 579 aa13□□□□□ -0.33
PTCHD4-202ENST00000398738 TULP1O00294 542 aaPredicted RBP13□□□□□ -0.33
PTCHD4-202ENST00000398738 C20orf194Q5TEA3 1177 aa13□□□□□ -0.33
PTCHD4-202ENST00000398738 USP35Q9P2H5 1018 aa13□□□□□ -0.33
PTCHD4-202ENST00000398738 SPATA31E1Q6ZUB1 1445 aa12.99□□□□□ -0.33
PTCHD4-202ENST00000398738 DCAF11Q8TEB1 546 aa12.99□□□□□ -0.33
PTCHD4-202ENST00000398738 CLASP1Q7Z460 1538 aa12.98□□□□□ -0.33
PTCHD4-202ENST00000398738 SYNJ2O15056 1496 aa12.98□□□□□ -0.33
PTCHD4-202ENST00000398738 CUL7Q14999 1698 aa12.98□□□□□ -0.33
PTCHD4-202ENST00000398738 EFCAB5A4FU69 1503 aa12.98□□□□□ -0.33
PTCHD4-202ENST00000398738 RGL3Q3MIN7 710 aa12.98□□□□□ -0.33
PTCHD4-202ENST00000398738 RPRD2Q5VT52 1461 aaKnown RBP12.97□□□□□ -0.33
PTCHD4-202ENST00000398738 FRAT2O75474 233 aaPredicted RBP12.96□□□□□ -0.33
PTCHD4-202ENST00000398738 MYBBP1AQ9BQG0 1328 aaKnown RBP12.96□□□□□ -0.33
PTCHD4-202ENST00000398738 DDRGK1Q96HY6 314 aa12.96□□□□□ -0.33
PTCHD4-202ENST00000398738 MAGI3Q5TCQ9 1506 aa12.95□□□□□ -0.34
PTCHD4-202ENST00000398738 FARP1Q9Y4F1 1045 aaPredicted RBP12.95□□□□□ -0.34
PTCHD4-202ENST00000398738 MS4A1P11836 297 aa12.94□□□□□ -0.34
PTCHD4-202ENST00000398738 IFNL1Q8IU54 200 aa12.94□□□□□ -0.34
PTCHD4-202ENST00000398738 CFDP1Q9UEE9 299 aaPredicted RBP12.94□□□□□ -0.34
PTCHD4-202ENST00000398738 WASHC2CQ9Y4E1 1318 aa12.93□□□□□ -0.34
PTCHD4-202ENST00000398738 CDK13Q14004 1512 aaKnown RBP12.93□□□□□ -0.34
PTCHD4-202ENST00000398738 KIF15Q9NS87 1388 aa12.93□□□□□ -0.34
PTCHD4-202ENST00000398738 CCDC61Q9Y6R9 512 aa12.93□□□□□ -0.34
PTCHD4-202ENST00000398738 TEX14Q8IWB6 1497 aa12.92□□□□□ -0.34
PTCHD4-202ENST00000398738 PRKAR2AP13861 404 aaKnown RBP12.92□□□□□ -0.34
PTCHD4-202ENST00000398738 SUPT6HQ7KZ85 1726 aaKnown RBP12.92□□□□□ -0.34
PTCHD4-202ENST00000398738 NLRP13Q86W25 1043 aa12.92□□□□□ -0.34
PTCHD4-202ENST00000398738 SHROOM2Q13796 1616 aa12.91□□□□□ -0.34
PTCHD4-202ENST00000398738 RALBP1Q15311 655 aa12.91□□□□□ -0.34
PTCHD4-202ENST00000398738 UGGT2Q9NYU1 1516 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms