RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 AEBP2Q6ZN18 517 aaPredicted RBP24.43■■□□□ 1.5
PTCHD4-202ENST00000398738 CHIC1Q5VXU3 224 aa24.06■■□□□ 1.44
PTCHD4-202ENST00000398738 PHF23Q9BUL5 403 aaPredicted RBP21.69■■□□□ 1.06
PTCHD4-202ENST00000398738 SENP3Q9H4L4 574 aaPredicted RBP19.91■□□□□ 0.78
PTCHD4-202ENST00000398738 PLPPR3Q6T4P5 718 aa19.73■□□□□ 0.75
PTCHD4-202ENST00000398738 ADRA2BP18089 450 aa19.28■□□□□ 0.68
PTCHD4-202ENST00000398738 PPP6R1Q9UPN7 881 aa19.09■□□□□ 0.65
PTCHD4-202ENST00000398738 FOXD1Q16676 465 aa18.87■□□□□ 0.61
PTCHD4-202ENST00000398738 KCNA4P22459 653 aa18.55■□□□□ 0.56
PTCHD4-202ENST00000398738 NISCHQ9Y2I1 1504 aa18.52■□□□□ 0.56
PTCHD4-202ENST00000398738 EHMT2Q96KQ7 1210 aa18.43■□□□□ 0.54
PTCHD4-202ENST00000398738 PIAS4Q8N2W9 510 aaPredicted RBP17.94■□□□□ 0.46
PTCHD4-202ENST00000398738 PPP4R3CPQ6ZMV5 832 aa17.71■□□□□ 0.43
PTCHD4-202ENST00000398738 CSRNP3Q8WYN3 585 aa17.57■□□□□ 0.4
PTCHD4-202ENST00000398738 SLC4A1APQ9BWU0 796 aaKnown RBP17.47■□□□□ 0.39
PTCHD4-202ENST00000398738 NPM3O75607 178 aaKnown RBP17.35■□□□□ 0.37
PTCHD4-202ENST00000398738 ZBTB22O15209 634 aa17.25■□□□□ 0.35
PTCHD4-202ENST00000398738 MAPK8IP2Q13387 824 aaPredicted RBP17.18■□□□□ 0.34
PTCHD4-202ENST00000398738 NCBP3Q53F19 620 aaKnown RBP16.98■□□□□ 0.31
PTCHD4-202ENST00000398738 SHROOM4Q9ULL8 1493 aa16.9■□□□□ 0.3
PTCHD4-202ENST00000398738 SUPT5HO00267 1087 aaKnown RBP16.83■□□□□ 0.28
PTCHD4-202ENST00000398738 CNKSR2Q8WXI2 1034 aa16.77■□□□□ 0.28
PTCHD4-202ENST00000398738 CCDC180Q9P1Z9 1646 aa16.6■□□□□ 0.25
PTCHD4-202ENST00000398738 HRCP23327 699 aa16.52■□□□□ 0.24
PTCHD4-202ENST00000398738 PCGF6Q9BYE7 350 aa16.51■□□□□ 0.23
PTCHD4-202ENST00000398738 SCAF1Q9H7N4 1312 aaKnown RBP16.49■□□□□ 0.23
PTCHD4-202ENST00000398738 MSH5O43196 834 aa16.48■□□□□ 0.23
PTCHD4-202ENST00000398738 PPARGC1BQ86YN6 1023 aaKnown RBP16.47■□□□□ 0.23
PTCHD4-202ENST00000398738 FOXD4L1Q9NU39 408 aa16.37■□□□□ 0.21
PTCHD4-202ENST00000398738 SLC4A2P04920 1241 aa16.3■□□□□ 0.2
PTCHD4-202ENST00000398738 RNF216Q9NWF9 866 aaPredicted RBP16.23■□□□□ 0.19
PTCHD4-202ENST00000398738 DCAF8L2P0C7V8 631 aa16.21■□□□□ 0.19
PTCHD4-202ENST00000398738 MYO15BQ96JP2 1530 aa16.2■□□□□ 0.18
PTCHD4-202ENST00000398738 DMRT2Q9Y5R5 561 aa16.09■□□□□ 0.17
PTCHD4-202ENST00000398738 LOC105371045A0A1W2PR82 267 aa16.07■□□□□ 0.16
PTCHD4-202ENST00000398738 HOXD11P31277 338 aaPredicted RBP16.01■□□□□ 0.15
PTCHD4-202ENST00000398738 RTN4Q9NQC3 1192 aaKnown RBP16■□□□□ 0.15
PTCHD4-202ENST00000398738 ATF5Q9Y2D1 282 aaPredicted RBP15.89■□□□□ 0.13
PTCHD4-202ENST00000398738 DCAF8L1A6NGE4 600 aa15.86■□□□□ 0.13
PTCHD4-202ENST00000398738 DNAJC5BQ9UF47 199 aa15.85■□□□□ 0.13
PTCHD4-202ENST00000398738 FKBP8Q14318 412 aa15.82■□□□□ 0.12
PTCHD4-202ENST00000398738 ABCC9O60706 1549 aa15.8■□□□□ 0.12
PTCHD4-202ENST00000398738 TRIM26Q12899 539 aaPredicted RBP15.77■□□□□ 0.11
PTCHD4-202ENST00000398738 FAM9AQ8IZU1 332 aaPredicted RBP15.66■□□□□ 0.1
PTCHD4-202ENST00000398738 MYCNP04198 464 aaPredicted RBP15.64■□□□□ 0.09
PTCHD4-202ENST00000398738 ZCCHC6Q5VYS8 1495 aaKnown RBP15.63■□□□□ 0.09
PTCHD4-202ENST00000398738 DCAF1Q9Y4B6 1507 aa15.61■□□□□ 0.09
PTCHD4-202ENST00000398738 PELP1Q8IZL8 1130 aaKnown RBP15.6■□□□□ 0.09
PTCHD4-202ENST00000398738 ZEB1P37275 1124 aaPredicted RBP15.5■□□□□ 0.07
PTCHD4-202ENST00000398738 NACADO15069 1562 aa15.48■□□□□ 0.07
PTCHD4-202ENST00000398738 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.45■□□□□ 0.064e-7■■□□□ 12.8
PTCHD4-202ENST00000398738 U3KPZ7 1027 aaPredicted RBP15.45■□□□□ 0.06
PTCHD4-202ENST00000398738 RB1CC1Q8TDY2 1594 aa15.43■□□□□ 0.06
PTCHD4-202ENST00000398738 TRIM41Q8WV44 630 aa15.42■□□□□ 0.06
PTCHD4-202ENST00000398738 SLC24A1O60721 1099 aa15.37■□□□□ 0.05
PTCHD4-202ENST00000398738 TTBK1Q5TCY1 1321 aaPredicted RBP15.35■□□□□ 0.05
PTCHD4-202ENST00000398738 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.35■□□□□ 0.05
PTCHD4-202ENST00000398738 NEUROD1Q13562 356 aa15.32■□□□□ 0.04
PTCHD4-202ENST00000398738 ATXN8OSP0DMR3 200 aa15.29■□□□□ 0.04
PTCHD4-202ENST00000398738 CCER1Q8TC90 406 aaPredicted RBP15.28■□□□□ 0.04
PTCHD4-202ENST00000398738 AMER1Q5JTC6 1135 aaPredicted RBP15.26■□□□□ 0.03
PTCHD4-202ENST00000398738 GTF3C3Q9Y5Q9 886 aa15.26■□□□□ 0.03
PTCHD4-202ENST00000398738 ACIN1Q9UKV3 1341 aaKnown RBP15.26■□□□□ 0.03
PTCHD4-202ENST00000398738 UNC13AQ9UPW8 1703 aa15.25■□□□□ 0.03
PTCHD4-202ENST00000398738 DIEXFQ68CQ4 756 aaKnown RBP15.15■□□□□ 0.02
PTCHD4-202ENST00000398738 YTHDC1Q96MU7 727 aaKnown RBP15.15■□□□□ 0.02
PTCHD4-202ENST00000398738 CENPBP07199 599 aaPredicted RBP15.12■□□□□ 0.01
PTCHD4-202ENST00000398738 SPINK5Q9NQ38 1064 aaPredicted RBP15.07■□□□□ 0
PTCHD4-202ENST00000398738 BICRAQ9NZM4 1560 aa15.05■□□□□ -0
PTCHD4-202ENST00000398738 MKRN4PQ13434 485 aaPredicted RBP15.05■□□□□ -0
PTCHD4-202ENST00000398738 ZNF219Q9P2Y4 722 aaPredicted RBP15.02□□□□□ -0.01
PTCHD4-202ENST00000398738 RSF1Q96T23 1441 aaPredicted RBP14.96□□□□□ -0.01
PTCHD4-202ENST00000398738 SAMD1Q6SPF0 538 aaPredicted RBP14.96□□□□□ -0.01
PTCHD4-202ENST00000398738 TRHP20396 242 aaPredicted RBP14.95□□□□□ -0.02
PTCHD4-202ENST00000398738 SCRIBQ14160 1630 aa14.9□□□□□ -0.02
PTCHD4-202ENST00000398738 MYT1Q01538 1121 aa14.87□□□□□ -0.03
PTCHD4-202ENST00000398738 SPDYE4A6NLX3 237 aa14.82□□□□□ -0.04
PTCHD4-202ENST00000398738 ZNF316A6NFI3 1004 aaPredicted RBP14.81□□□□□ -0.04
PTCHD4-202ENST00000398738 MIER1Q8N108 512 aa14.8□□□□□ -0.04
PTCHD4-202ENST00000398738 POLA2Q14181 598 aa14.79□□□□□ -0.04
PTCHD4-202ENST00000398738 HNRNPUL2Q1KMD3 747 aaKnown RBP14.79□□□□□ -0.04
PTCHD4-202ENST00000398738 ABCB7O75027 752 aa14.78□□□□□ -0.04
PTCHD4-202ENST00000398738 UBTFP17480 764 aaKnown RBP14.75□□□□□ -0.05
PTCHD4-202ENST00000398738 RANGAP1P46060 587 aaPredicted RBP14.7□□□□□ -0.06
PTCHD4-202ENST00000398738 IFNLR1Q8IU57 520 aaPredicted RBP14.69□□□□□ -0.06
PTCHD4-202ENST00000398738 CAPN15O75808 1086 aa14.69□□□□□ -0.06
PTCHD4-202ENST00000398738 PABPN1Q86U42 306 aaKnown RBP eCLIP14.66□□□□□ -0.06
PTCHD4-202ENST00000398738 CECR2Q9BXF3 1484 aa14.66□□□□□ -0.06
PTCHD4-202ENST00000398738 VASPP50552 380 aaPredicted RBP14.59□□□□□ -0.07
PTCHD4-202ENST00000398738 CEP162Q5TB80 1403 aa14.56□□□□□ -0.08
PTCHD4-202ENST00000398738 EIF4G1Q04637 1599 aaKnown RBP14.55□□□□□ -0.08
PTCHD4-202ENST00000398738 MROH2BQ7Z745 1585 aa14.54□□□□□ -0.08
PTCHD4-202ENST00000398738 RNF39Q9H2S5 420 aa14.53□□□□□ -0.08
PTCHD4-202ENST00000398738 SOGA1O94964 1423 aa14.49□□□□□ -0.09
PTCHD4-202ENST00000398738 CCDC88BA6NC98 1476 aa14.48□□□□□ -0.09
PTCHD4-202ENST00000398738 PKD2Q13563 968 aa14.47□□□□□ -0.09
PTCHD4-202ENST00000398738 CC2D2AQ9P2K1 1620 aa14.47□□□□□ -0.09
PTCHD4-202ENST00000398738 ABCC8Q09428 1581 aa14.46□□□□□ -0.09
PTCHD4-202ENST00000398738 APLP2Q06481 763 aa14.46□□□□□ -0.09
PTCHD4-202ENST00000398738 BCANQ96GW7 911 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms