RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 AEBP2Q6ZN18 517 aaPredicted RBP24.43■■□□□ 1.5
PTCHD4-202ENST00000398738 CHIC1Q5VXU3 224 aa24.06■■□□□ 1.44
PTCHD4-202ENST00000398738 PHF23Q9BUL5 403 aaPredicted RBP21.69■■□□□ 1.06
PTCHD4-202ENST00000398738 SENP3Q9H4L4 574 aaPredicted RBP19.91■□□□□ 0.78
PTCHD4-202ENST00000398738 PLPPR3Q6T4P5 718 aa19.73■□□□□ 0.75
PTCHD4-202ENST00000398738 ADRA2BP18089 450 aa19.28■□□□□ 0.68
PTCHD4-202ENST00000398738 PPP6R1Q9UPN7 881 aa19.09■□□□□ 0.65
PTCHD4-202ENST00000398738 FOXD1Q16676 465 aa18.87■□□□□ 0.61
PTCHD4-202ENST00000398738 KCNA4P22459 653 aa18.55■□□□□ 0.56
PTCHD4-202ENST00000398738 NISCHQ9Y2I1 1504 aa18.52■□□□□ 0.56
PTCHD4-202ENST00000398738 EHMT2Q96KQ7 1210 aa18.43■□□□□ 0.54
PTCHD4-202ENST00000398738 PIAS4Q8N2W9 510 aaPredicted RBP17.94■□□□□ 0.46
PTCHD4-202ENST00000398738 PPP4R3CPQ6ZMV5 832 aa17.71■□□□□ 0.43
PTCHD4-202ENST00000398738 CSRNP3Q8WYN3 585 aa17.57■□□□□ 0.4
PTCHD4-202ENST00000398738 SLC4A1APQ9BWU0 796 aaKnown RBP17.47■□□□□ 0.39
PTCHD4-202ENST00000398738 NPM3O75607 178 aaKnown RBP17.35■□□□□ 0.37
PTCHD4-202ENST00000398738 ZBTB22O15209 634 aa17.25■□□□□ 0.35
PTCHD4-202ENST00000398738 MAPK8IP2Q13387 824 aaPredicted RBP17.18■□□□□ 0.34
PTCHD4-202ENST00000398738 NCBP3Q53F19 620 aaKnown RBP16.98■□□□□ 0.31
PTCHD4-202ENST00000398738 SHROOM4Q9ULL8 1493 aa16.9■□□□□ 0.3
PTCHD4-202ENST00000398738 SUPT5HO00267 1087 aaKnown RBP16.83■□□□□ 0.28
PTCHD4-202ENST00000398738 CNKSR2Q8WXI2 1034 aa16.77■□□□□ 0.28
PTCHD4-202ENST00000398738 CCDC180Q9P1Z9 1646 aa16.6■□□□□ 0.25
PTCHD4-202ENST00000398738 HRCP23327 699 aa16.52■□□□□ 0.24
PTCHD4-202ENST00000398738 PCGF6Q9BYE7 350 aa16.51■□□□□ 0.23
PTCHD4-202ENST00000398738 SCAF1Q9H7N4 1312 aaKnown RBP16.49■□□□□ 0.23
PTCHD4-202ENST00000398738 MSH5O43196 834 aa16.48■□□□□ 0.23
PTCHD4-202ENST00000398738 PPARGC1BQ86YN6 1023 aaKnown RBP16.47■□□□□ 0.23
PTCHD4-202ENST00000398738 FOXD4L1Q9NU39 408 aa16.37■□□□□ 0.21
PTCHD4-202ENST00000398738 SLC4A2P04920 1241 aa16.3■□□□□ 0.2
PTCHD4-202ENST00000398738 RNF216Q9NWF9 866 aaPredicted RBP16.23■□□□□ 0.19
PTCHD4-202ENST00000398738 DCAF8L2P0C7V8 631 aa16.21■□□□□ 0.19
PTCHD4-202ENST00000398738 MYO15BQ96JP2 1530 aa16.2■□□□□ 0.18
PTCHD4-202ENST00000398738 DMRT2Q9Y5R5 561 aa16.09■□□□□ 0.17
PTCHD4-202ENST00000398738 LOC105371045A0A1W2PR82 267 aa16.07■□□□□ 0.16
PTCHD4-202ENST00000398738 HOXD11P31277 338 aaPredicted RBP16.01■□□□□ 0.15
PTCHD4-202ENST00000398738 RTN4Q9NQC3 1192 aaKnown RBP16■□□□□ 0.15
PTCHD4-202ENST00000398738 ATF5Q9Y2D1 282 aaPredicted RBP15.89■□□□□ 0.13
PTCHD4-202ENST00000398738 DCAF8L1A6NGE4 600 aa15.86■□□□□ 0.13
PTCHD4-202ENST00000398738 DNAJC5BQ9UF47 199 aa15.85■□□□□ 0.13
PTCHD4-202ENST00000398738 FKBP8Q14318 412 aa15.82■□□□□ 0.12
PTCHD4-202ENST00000398738 ABCC9O60706 1549 aa15.8■□□□□ 0.12
PTCHD4-202ENST00000398738 TRIM26Q12899 539 aaPredicted RBP15.77■□□□□ 0.11
PTCHD4-202ENST00000398738 FAM9AQ8IZU1 332 aaPredicted RBP15.66■□□□□ 0.1
PTCHD4-202ENST00000398738 MYCNP04198 464 aaPredicted RBP15.64■□□□□ 0.09
PTCHD4-202ENST00000398738 ZCCHC6Q5VYS8 1495 aaKnown RBP15.63■□□□□ 0.09
PTCHD4-202ENST00000398738 DCAF1Q9Y4B6 1507 aa15.61■□□□□ 0.09
PTCHD4-202ENST00000398738 PELP1Q8IZL8 1130 aaKnown RBP15.6■□□□□ 0.09
PTCHD4-202ENST00000398738 ZEB1P37275 1124 aaPredicted RBP15.5■□□□□ 0.07
PTCHD4-202ENST00000398738 NACADO15069 1562 aa15.48■□□□□ 0.07
PTCHD4-202ENST00000398738 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.45■□□□□ 0.064e-7■■□□□ 12.8
PTCHD4-202ENST00000398738 U3KPZ7 1027 aaPredicted RBP15.45■□□□□ 0.06
PTCHD4-202ENST00000398738 RB1CC1Q8TDY2 1594 aa15.43■□□□□ 0.06
PTCHD4-202ENST00000398738 TRIM41Q8WV44 630 aa15.42■□□□□ 0.06
PTCHD4-202ENST00000398738 SLC24A1O60721 1099 aa15.37■□□□□ 0.05
PTCHD4-202ENST00000398738 TTBK1Q5TCY1 1321 aaPredicted RBP15.35■□□□□ 0.05
PTCHD4-202ENST00000398738 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.35■□□□□ 0.05
PTCHD4-202ENST00000398738 NEUROD1Q13562 356 aa15.32■□□□□ 0.04
PTCHD4-202ENST00000398738 ATXN8OSP0DMR3 200 aa15.29■□□□□ 0.04
PTCHD4-202ENST00000398738 CCER1Q8TC90 406 aaPredicted RBP15.28■□□□□ 0.04
PTCHD4-202ENST00000398738 AMER1Q5JTC6 1135 aaPredicted RBP15.26■□□□□ 0.03
PTCHD4-202ENST00000398738 GTF3C3Q9Y5Q9 886 aa15.26■□□□□ 0.03
PTCHD4-202ENST00000398738 ACIN1Q9UKV3 1341 aaKnown RBP15.26■□□□□ 0.03
PTCHD4-202ENST00000398738 UNC13AQ9UPW8 1703 aa15.25■□□□□ 0.03
PTCHD4-202ENST00000398738 DIEXFQ68CQ4 756 aaKnown RBP15.15■□□□□ 0.02
PTCHD4-202ENST00000398738 YTHDC1Q96MU7 727 aaKnown RBP15.15■□□□□ 0.02
PTCHD4-202ENST00000398738 CENPBP07199 599 aaPredicted RBP15.12■□□□□ 0.01
PTCHD4-202ENST00000398738 SPINK5Q9NQ38 1064 aaPredicted RBP15.07■□□□□ 0
PTCHD4-202ENST00000398738 BICRAQ9NZM4 1560 aa15.05■□□□□ -0
PTCHD4-202ENST00000398738 MKRN4PQ13434 485 aaPredicted RBP15.05■□□□□ -0
PTCHD4-202ENST00000398738 ZNF219Q9P2Y4 722 aaPredicted RBP15.02□□□□□ -0.01
PTCHD4-202ENST00000398738 RSF1Q96T23 1441 aaPredicted RBP14.96□□□□□ -0.01
PTCHD4-202ENST00000398738 SAMD1Q6SPF0 538 aaPredicted RBP14.96□□□□□ -0.01
PTCHD4-202ENST00000398738 TRHP20396 242 aaPredicted RBP14.95□□□□□ -0.02
PTCHD4-202ENST00000398738 SCRIBQ14160 1630 aa14.9□□□□□ -0.02
PTCHD4-202ENST00000398738 MYT1Q01538 1121 aa14.87□□□□□ -0.03
PTCHD4-202ENST00000398738 SPDYE4A6NLX3 237 aa14.82□□□□□ -0.04
PTCHD4-202ENST00000398738 ZNF316A6NFI3 1004 aaPredicted RBP14.81□□□□□ -0.04
PTCHD4-202ENST00000398738 MIER1Q8N108 512 aa14.8□□□□□ -0.04
PTCHD4-202ENST00000398738 POLA2Q14181 598 aa14.79□□□□□ -0.04
PTCHD4-202ENST00000398738 HNRNPUL2Q1KMD3 747 aaKnown RBP14.79□□□□□ -0.04
PTCHD4-202ENST00000398738 ABCB7O75027 752 aa14.78□□□□□ -0.04
PTCHD4-202ENST00000398738 UBTFP17480 764 aaKnown RBP14.75□□□□□ -0.05
PTCHD4-202ENST00000398738 RANGAP1P46060 587 aaPredicted RBP14.7□□□□□ -0.06
PTCHD4-202ENST00000398738 IFNLR1Q8IU57 520 aaPredicted RBP14.69□□□□□ -0.06
PTCHD4-202ENST00000398738 CAPN15O75808 1086 aa14.69□□□□□ -0.06
PTCHD4-202ENST00000398738 PABPN1Q86U42 306 aaKnown RBP eCLIP14.66□□□□□ -0.06
PTCHD4-202ENST00000398738 CECR2Q9BXF3 1484 aa14.66□□□□□ -0.06
PTCHD4-202ENST00000398738 VASPP50552 380 aaPredicted RBP14.59□□□□□ -0.07
PTCHD4-202ENST00000398738 CEP162Q5TB80 1403 aa14.56□□□□□ -0.08
PTCHD4-202ENST00000398738 EIF4G1Q04637 1599 aaKnown RBP14.55□□□□□ -0.08
PTCHD4-202ENST00000398738 MROH2BQ7Z745 1585 aa14.54□□□□□ -0.08
PTCHD4-202ENST00000398738 RNF39Q9H2S5 420 aa14.53□□□□□ -0.08
PTCHD4-202ENST00000398738 SOGA1O94964 1423 aa14.49□□□□□ -0.09
PTCHD4-202ENST00000398738 CCDC88BA6NC98 1476 aa14.48□□□□□ -0.09
PTCHD4-202ENST00000398738 PKD2Q13563 968 aa14.47□□□□□ -0.09
PTCHD4-202ENST00000398738 CC2D2AQ9P2K1 1620 aa14.47□□□□□ -0.09
PTCHD4-202ENST00000398738 ABCC8Q09428 1581 aa14.46□□□□□ -0.09
PTCHD4-202ENST00000398738 APLP2Q06481 763 aa14.46□□□□□ -0.09
PTCHD4-202ENST00000398738 BCANQ96GW7 911 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms