RNA–Protein interactions for RNA: ENST00000396629.6

SCFD1-202, Transcript of sec1 family domain containing 1, humanhuman

TSL 2 BASIC

Gene SCFD1, Length 2,021 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-202ENST00000396629 RTEL1-TNFRSF6BF6WH68 1400 aa13.81□□□□□ -0.2
SCFD1-202ENST00000396629 PIP4K2BP78356 416 aa13.81□□□□□ -0.2
SCFD1-202ENST00000396629 MBD5Q9P267 1494 aa13.8□□□□□ -0.2
SCFD1-202ENST00000396629 SCAF1Q9H7N4 1312 aaKnown RBP13.8□□□□□ -0.2
SCFD1-202ENST00000396629 VWDEQ8N2E2 1590 aa13.8□□□□□ -0.2
SCFD1-202ENST00000396629 FAM135AQ9P2D6 1515 aa13.8□□□□□ -0.2
SCFD1-202ENST00000396629 DHX29Q7Z478 1369 aaKnown RBP13.8□□□□□ -0.2
SCFD1-202ENST00000396629 TNRQ92752 1358 aa13.8□□□□□ -0.2
SCFD1-202ENST00000396629 ALKQ9UM73 1620 aa13.79□□□□□ -0.2
SCFD1-202ENST00000396629 TIAM1Q13009 1591 aa13.79□□□□□ -0.2
SCFD1-202ENST00000396629 PZPP20742 1482 aa13.79□□□□□ -0.2
SCFD1-202ENST00000396629 DEPDC5O75140 1603 aa13.78□□□□□ -0.2
SCFD1-202ENST00000396629 FBXO31Q5XUX0 539 aaPredicted RBP13.78□□□□□ -0.2
SCFD1-202ENST00000396629 ZNF644Q9H582 1327 aaPredicted RBP13.77□□□□□ -0.2
SCFD1-202ENST00000396629 MED14O60244 1454 aa13.77□□□□□ -0.21
SCFD1-202ENST00000396629 KDM5DQ9BY66 1539 aa13.77□□□□□ -0.21
SCFD1-202ENST00000396629 MTUS2Q5JR59 1369 aa13.76□□□□□ -0.21
SCFD1-202ENST00000396629 ANKLE2Q86XL3 938 aa13.76□□□□□ -0.21
SCFD1-202ENST00000396629 THEMISQ8N1K5 641 aaPredicted RBP13.74□□□□□ -0.21
SCFD1-202ENST00000396629 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.74□□□□□ -0.21
SCFD1-202ENST00000396629 NLRP1Q9C000 1473 aa13.74□□□□□ -0.21
SCFD1-202ENST00000396629 NPHP4O75161 1426 aaPredicted RBP13.74□□□□□ -0.21
SCFD1-202ENST00000396629 MIA2Q96PC5 1412 aa13.74□□□□□ -0.21
SCFD1-202ENST00000396629 STRCP1A6NGW2 1772 aa13.74□□□□□ -0.21
SCFD1-202ENST00000396629 KIF3BO15066 747 aa13.73□□□□□ -0.21
SCFD1-202ENST00000396629 UGGT1Q9NYU2 1555 aa13.73□□□□□ -0.21
SCFD1-202ENST00000396629 IQGAP1P46940 1657 aa13.73□□□□□ -0.21
SCFD1-202ENST00000396629 EHBP1L1Q8N3D4 1523 aa13.73□□□□□ -0.21
SCFD1-202ENST00000396629 CEP162Q5TB80 1403 aa13.71□□□□□ -0.21
SCFD1-202ENST00000396629 CCDC141Q6ZP82 1450 aa13.71□□□□□ -0.21
SCFD1-202ENST00000396629 WASHC2CQ9Y4E1 1318 aa13.7□□□□□ -0.22
SCFD1-202ENST00000396629 LRRC7Q96NW7 1537 aa13.7□□□□□ -0.22
SCFD1-202ENST00000396629 SYNMO15061 1565 aa13.7□□□□□ -0.22
SCFD1-202ENST00000396629 RNF17Q9BXT8 1623 aaKnown RBP13.69□□□□□ -0.22
SCFD1-202ENST00000396629 RSPH4AQ5TD94 716 aa13.68□□□□□ -0.22
SCFD1-202ENST00000396629 CAMSAP2Q08AD1 1489 aa13.67□□□□□ -0.22
SCFD1-202ENST00000396629 ZC3H13Q5T200 1668 aaKnown RBP13.67□□□□□ -0.22
SCFD1-202ENST00000396629 ARHGEF5Q12774 1597 aa13.66□□□□□ -0.22
SCFD1-202ENST00000396629 XIRP1Q702N8 1843 aaKnown RBP13.64□□□□□ -0.23
SCFD1-202ENST00000396629 ABCC3O15438 1527 aa13.64□□□□□ -0.23
SCFD1-202ENST00000396629 UBR1Q8IWV7 1749 aa13.64□□□□□ -0.23
SCFD1-202ENST00000396629 NCOA2Q15596 1464 aa13.63□□□□□ -0.23
SCFD1-202ENST00000396629 ERVK-7P63135 1459 aa13.63□□□□□ -0.23
SCFD1-202ENST00000396629 RGS17Q9UGC6 210 aaPredicted RBP13.63□□□□□ -0.23
SCFD1-202ENST00000396629 CFAP65Q6ZU64 1925 aaKnown RBP13.62□□□□□ -0.23
SCFD1-202ENST00000396629 EIF2AK4Q9P2K8 1649 aaKnown RBP13.62□□□□□ -0.23
SCFD1-202ENST00000396629 MAST1Q9Y2H9 1570 aa13.61□□□□□ -0.23
SCFD1-202ENST00000396629 MROH1Q8NDA8 1641 aa13.6□□□□□ -0.23
SCFD1-202ENST00000396629 TSPY4P0CV99 314 aa13.6□□□□□ -0.23
SCFD1-202ENST00000396629 TSPY10P0CW01 314 aa13.6□□□□□ -0.23
SCFD1-202ENST00000396629 CEP152O94986 1710 aa13.6□□□□□ -0.23
SCFD1-202ENST00000396629 SCAF11Q99590 1463 aaKnown RBP13.59□□□□□ -0.23
SCFD1-202ENST00000396629 ARHGAP23Q9P227 1491 aa13.59□□□□□ -0.23
SCFD1-202ENST00000396629 SLIT1O75093 1534 aa13.59□□□□□ -0.23
SCFD1-202ENST00000396629 LTKP29376 864 aa13.56□□□□□ -0.24
SCFD1-202ENST00000396629 FAM135BQ49AJ0 1406 aa13.56□□□□□ -0.24
SCFD1-202ENST00000396629 TXNDC2Q86VQ3 553 aa13.54□□□□□ -0.24
SCFD1-202ENST00000396629 ARHGAP31Q2M1Z3 1444 aa13.53□□□□□ -0.24
SCFD1-202ENST00000396629 DUOX2Q9NRD8 1548 aa13.52□□□□□ -0.25
SCFD1-202ENST00000396629 POTEAQ6S8J7 498 aa13.52□□□□□ -0.25
SCFD1-202ENST00000396629 PIK3C2BO00750 1634 aa13.52□□□□□ -0.25
SCFD1-202ENST00000396629 KDM5AP29375 1690 aaKnown RBP13.51□□□□□ -0.25
SCFD1-202ENST00000396629 ROBO1Q9Y6N7 1651 aa13.51□□□□□ -0.25
SCFD1-202ENST00000396629 EID1Q9Y6B2 187 aa13.51□□□□□ -0.25
SCFD1-202ENST00000396629 PRDM15P57071 1507 aaPredicted RBP13.5□□□□□ -0.25
SCFD1-202ENST00000396629 LRRC9Q6ZRR7 1453 aa13.49□□□□□ -0.25
SCFD1-202ENST00000396629 TMEM2Q9UHN6 1383 aa13.49□□□□□ -0.25
SCFD1-202ENST00000396629 MAP3K1Q13233 1512 aa13.48□□□□□ -0.25
SCFD1-202ENST00000396629 TMEM94Q12767 1356 aa13.48□□□□□ -0.25
SCFD1-202ENST00000396629 TET3O43151 1660 aa13.48□□□□□ -0.25
SCFD1-202ENST00000396629 KCNA6P17658 529 aa13.47□□□□□ -0.25
SCFD1-202ENST00000396629 MYOM3Q5VTT5 1437 aa13.46□□□□□ -0.25
SCFD1-202ENST00000396629 SETD1AO15047 1707 aaKnown RBP13.45□□□□□ -0.26
SCFD1-202ENST00000396629 ERBINQ96RT1 1412 aa13.45□□□□□ -0.26
SCFD1-202ENST00000396629 NWD1Q149M9 1564 aa13.45□□□□□ -0.26
SCFD1-202ENST00000396629 EFCAB6Q5THR3 1501 aa13.45□□□□□ -0.26
SCFD1-202ENST00000396629 CROCC2H7BZ55 1655 aa13.45□□□□□ -0.26
SCFD1-202ENST00000396629 PHLPP1O60346 1717 aa13.44□□□□□ -0.26
SCFD1-202ENST00000396629 PROSER2Q86WR7 435 aaPredicted RBP13.44□□□□□ -0.26
SCFD1-202ENST00000396629 KIF15Q9NS87 1388 aa13.43□□□□□ -0.26
SCFD1-202ENST00000396629 NKTRP30414 1462 aaKnown RBP13.43□□□□□ -0.26
SCFD1-202ENST00000396629 LMTK2Q8IWU2 1503 aa13.42□□□□□ -0.26
SCFD1-202ENST00000396629 IDI1Q13907 227 aa13.42□□□□□ -0.26
SCFD1-202ENST00000396629 STAG3Q9UJ98 1225 aa13.42□□□□□ -0.26
SCFD1-202ENST00000396629 ABCC5O15440 1437 aa13.41□□□□□ -0.26
SCFD1-202ENST00000396629 VPS8Q8N3P4 1428 aa13.41□□□□□ -0.26
SCFD1-202ENST00000396629 KANK4Q5T7N3 995 aaPredicted RBP13.4□□□□□ -0.26
SCFD1-202ENST00000396629 SLC26A8Q96RN1 970 aa13.4□□□□□ -0.26
SCFD1-202ENST00000396629 CHD2O14647 1828 aaKnown RBP13.4□□□□□ -0.26
SCFD1-202ENST00000396629 KANK1Q14678 1352 aa13.4□□□□□ -0.26
SCFD1-202ENST00000396629 JCADQ9P266 1359 aa13.4□□□□□ -0.26
SCFD1-202ENST00000396629 RBM33Q96EV2 1170 aaKnown RBP13.4□□□□□ -0.26
SCFD1-202ENST00000396629 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.4□□□□□ -0.262e-7■□□□□ 10.1
SCFD1-202ENST00000396629 ADGRB3O60242 1522 aa13.4□□□□□ -0.26
SCFD1-202ENST00000396629 MSH6P52701 1360 aa13.39□□□□□ -0.27
SCFD1-202ENST00000396629 RRP7BPQ9NSQ0 103 aa13.39□□□□□ -0.27
SCFD1-202ENST00000396629 NOS1P29475 1434 aa13.39□□□□□ -0.27
SCFD1-202ENST00000396629 SLAIN2Q9P270 581 aa13.39□□□□□ -0.27
SCFD1-202ENST00000396629 COL16A1Q07092 1604 aaPredicted RBP13.38□□□□□ -0.27
SCFD1-202ENST00000396629 PTPN23Q9H3S7 1636 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms