RNA–Protein interactions for RNA: ENST00000396629.6

SCFD1-202, Transcript of sec1 family domain containing 1, humanhuman

TSL 2 BASIC

Gene SCFD1, Length 2,021 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-202ENST00000396629 NISCHQ9Y2I1 1504 aa21.73■■□□□ 1.07
SCFD1-202ENST00000396629 ABCC9O60706 1549 aa19.9■□□□□ 0.78
SCFD1-202ENST00000396629 CCDC180Q9P1Z9 1646 aa19.67■□□□□ 0.74
SCFD1-202ENST00000396629 DNAJC5BQ9UF47 199 aa18.98■□□□□ 0.63
SCFD1-202ENST00000396629 RB1CC1Q8TDY2 1594 aa18.85■□□□□ 0.61
SCFD1-202ENST00000396629 NACADO15069 1562 aa18.65■□□□□ 0.58
SCFD1-202ENST00000396629 UNC13AQ9UPW8 1703 aa18.47■□□□□ 0.55
SCFD1-202ENST00000396629 PABPN1Q86U42 306 aaKnown RBP eCLIP18.46■□□□□ 0.553e-6■■■■□ 24.8
SCFD1-202ENST00000396629 DCAF8L2P0C7V8 631 aa18.38■□□□□ 0.53
SCFD1-202ENST00000396629 BICRAQ9NZM4 1560 aa18.33■□□□□ 0.53
SCFD1-202ENST00000396629 MYO15BQ96JP2 1530 aa18.31■□□□□ 0.52
SCFD1-202ENST00000396629 SHROOM4Q9ULL8 1493 aa18.05■□□□□ 0.48
SCFD1-202ENST00000396629 CC2D2AQ9P2K1 1620 aa18■□□□□ 0.47
SCFD1-202ENST00000396629 CECR2Q9BXF3 1484 aa17.98■□□□□ 0.47
SCFD1-202ENST00000396629 DCAF1Q9Y4B6 1507 aa17.96■□□□□ 0.46
SCFD1-202ENST00000396629 ZCCHC6Q5VYS8 1495 aaKnown RBP17.93■□□□□ 0.46
SCFD1-202ENST00000396629 EIF4G1Q04637 1599 aaKnown RBP17.88■□□□□ 0.45
SCFD1-202ENST00000396629 SCRIBQ14160 1630 aa17.84■□□□□ 0.45
SCFD1-202ENST00000396629 DNAJC5Q9H3Z4 198 aa17.67■□□□□ 0.42
SCFD1-202ENST00000396629 CUX2O14529 1486 aa17.33■□□□□ 0.36
SCFD1-202ENST00000396629 NCAPD3P42695 1498 aa17.21■□□□□ 0.35
SCFD1-202ENST00000396629 ERCC6Q03468 1493 aa17.2■□□□□ 0.34
SCFD1-202ENST00000396629 ATAD2BQ9ULI0 1458 aa17.11■□□□□ 0.33
SCFD1-202ENST00000396629 HMGXB3Q12766 1538 aa17.06■□□□□ 0.32
SCFD1-202ENST00000396629 SMARCA2P51531 1590 aa17.05■□□□□ 0.32
SCFD1-202ENST00000396629 SMARCA4P51532 1647 aa17.02■□□□□ 0.32
SCFD1-202ENST00000396629 NESP48681 1621 aa17.02■□□□□ 0.32
SCFD1-202ENST00000396629 THOC2Q8NI27 1593 aaKnown RBP16.95■□□□□ 0.3
SCFD1-202ENST00000396629 BAZ1BQ9UIG0 1483 aaKnown RBP16.9■□□□□ 0.3
SCFD1-202ENST00000396629 LAMC3Q9Y6N6 1575 aa16.89■□□□□ 0.29
SCFD1-202ENST00000396629 PEG3Q9GZU2 1588 aa16.88■□□□□ 0.29
SCFD1-202ENST00000396629 BAZ1AQ9NRL2 1556 aaPredicted RBP16.88■□□□□ 0.29
SCFD1-202ENST00000396629 KIF21AQ7Z4S6 1674 aa16.83■□□□□ 0.28
SCFD1-202ENST00000396629 PDS5BQ9NTI5 1447 aa16.77■□□□□ 0.28
SCFD1-202ENST00000396629 MROH2BQ7Z745 1585 aa16.73■□□□□ 0.27
SCFD1-202ENST00000396629 TRIM41Q8WV44 630 aa16.7■□□□□ 0.26
SCFD1-202ENST00000396629 CADPSQ9ULU8 1353 aa16.66■□□□□ 0.26
SCFD1-202ENST00000396629 MRC2Q9UBG0 1479 aa16.65■□□□□ 0.26
SCFD1-202ENST00000396629 WDR62O43379 1518 aa16.63■□□□□ 0.25
SCFD1-202ENST00000396629 WIZO95785 1651 aa16.52■□□□□ 0.24
SCFD1-202ENST00000396629 CEP164Q9UPV0 1460 aa16.51■□□□□ 0.23
SCFD1-202ENST00000396629 FANCD2Q9BXW9 1451 aa16.46■□□□□ 0.23
SCFD1-202ENST00000396629 OSCARQ8IYS5 282 aa16.45■□□□□ 0.22
SCFD1-202ENST00000396629 CFTRP13569 1480 aa16.41■□□□□ 0.22
SCFD1-202ENST00000396629 URB2Q14146 1524 aaKnown RBP16.36■□□□□ 0.21
SCFD1-202ENST00000396629 RIMBP3CA6NJZ7 1639 aa16.31■□□□□ 0.2
SCFD1-202ENST00000396629 RIMBP3BA6NNM3 1639 aa16.31■□□□□ 0.2
SCFD1-202ENST00000396629 RIMBP3Q9UFD9 1639 aa16.31■□□□□ 0.2
SCFD1-202ENST00000396629 TOP2AP11388 1531 aaKnown RBP16.29■□□□□ 0.2
SCFD1-202ENST00000396629 PRDM2Q13029 1718 aa16.28■□□□□ 0.2
SCFD1-202ENST00000396629 RSF1Q96T23 1441 aaPredicted RBP16.25■□□□□ 0.19
SCFD1-202ENST00000396629 AEBP2Q6ZN18 517 aaPredicted RBP16.21■□□□□ 0.18
SCFD1-202ENST00000396629 IFT140Q96RY7 1462 aa16.2■□□□□ 0.18
SCFD1-202ENST00000396629 ARHGEF11O15085 1522 aa16.2■□□□□ 0.18
SCFD1-202ENST00000396629 ZNF608Q9ULD9 1512 aaPredicted RBP16.2■□□□□ 0.18
SCFD1-202ENST00000396629 TOPBP1Q92547 1522 aa16.13■□□□□ 0.17
SCFD1-202ENST00000396629 EIF4G3O43432 1585 aaKnown RBP16.11■□□□□ 0.17
SCFD1-202ENST00000396629 CCDC88BA6NC98 1476 aa16.1■□□□□ 0.17
SCFD1-202ENST00000396629 ABCC8Q09428 1581 aa16.09■□□□□ 0.17
SCFD1-202ENST00000396629 CHD1O14646 1710 aa16.07■□□□□ 0.16
SCFD1-202ENST00000396629 CYB5RLQ6IPT4 315 aa16.07■□□□□ 0.16
SCFD1-202ENST00000396629 DNMBPQ6XZF7 1577 aa16.05■□□□□ 0.16
SCFD1-202ENST00000396629 TARBP1Q13395 1621 aaKnown RBP16.04■□□□□ 0.16
SCFD1-202ENST00000396629 ARAP1Q96P48 1450 aa16.02■□□□□ 0.16
SCFD1-202ENST00000396629 AQRO60306 1485 aaKnown RBP eCLIP16.01■□□□□ 0.152e-9■■■■■ 39.4
SCFD1-202ENST00000396629 TRHP20396 242 aaPredicted RBP15.97■□□□□ 0.15
SCFD1-202ENST00000396629 POLA1P09884 1462 aaPredicted RBP15.94■□□□□ 0.14
SCFD1-202ENST00000396629 FBLN2P98095 1184 aa15.92■□□□□ 0.14
SCFD1-202ENST00000396629 CLASP1Q7Z460 1538 aa15.88■□□□□ 0.13
SCFD1-202ENST00000396629 RAD54L2Q9Y4B4 1467 aa15.88■□□□□ 0.13
SCFD1-202ENST00000396629 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
SCFD1-202ENST00000396629 SOGA1O94964 1423 aa15.85■□□□□ 0.13
SCFD1-202ENST00000396629 TDRD9Q8NDG6 1382 aaKnown RBP15.84■□□□□ 0.13
SCFD1-202ENST00000396629 SNAPC4Q5SXM2 1469 aa15.84■□□□□ 0.13
SCFD1-202ENST00000396629 CHIC1Q5VXU3 224 aa15.84■□□□□ 0.13
SCFD1-202ENST00000396629 SYNJ1O43426 1573 aa15.82■□□□□ 0.12
SCFD1-202ENST00000396629 MAGI1Q96QZ7 1491 aaPredicted RBP15.8■□□□□ 0.12
SCFD1-202ENST00000396629 FGD5Q6ZNL6 1462 aa15.78■□□□□ 0.12
SCFD1-202ENST00000396629 CHMP7Q8WUX9 453 aaPredicted RBP15.77■□□□□ 0.12
SCFD1-202ENST00000396629 GRIN2BQ13224 1484 aa15.76■□□□□ 0.11
SCFD1-202ENST00000396629 SYNJ2O15056 1496 aa15.74■□□□□ 0.11
SCFD1-202ENST00000396629 CUX1P39880 1505 aa15.73■□□□□ 0.11
SCFD1-202ENST00000396629 PBRM1Q86U86 1689 aa15.71■□□□□ 0.1
SCFD1-202ENST00000396629 GAPVD1Q14C86 1478 aa15.69■□□□□ 0.1
SCFD1-202ENST00000396629 ABCA5Q8WWZ7 1642 aa15.63■□□□□ 0.09
SCFD1-202ENST00000396629 ABCA10Q8WWZ4 1543 aa15.61■□□□□ 0.09
SCFD1-202ENST00000396629 ERCC6L2Q5T890 1561 aa15.59■□□□□ 0.09
SCFD1-202ENST00000396629 GRIN2AQ12879 1464 aa15.55■□□□□ 0.08
SCFD1-202ENST00000396629 CEP170Q5SW79 1584 aa15.54■□□□□ 0.08
SCFD1-202ENST00000396629 NUP160Q12769 1436 aa15.53■□□□□ 0.08
SCFD1-202ENST00000396629 SHROOM2Q13796 1616 aa15.52■□□□□ 0.08
SCFD1-202ENST00000396629 ADAMTS12P58397 1594 aa15.52■□□□□ 0.08
SCFD1-202ENST00000396629 KIF13AQ9H1H9 1805 aa15.5■□□□□ 0.07
SCFD1-202ENST00000396629 WRNQ14191 1432 aaPredicted RBP eCLIP15.45■□□□□ 0.06
SCFD1-202ENST00000396629 FHAD1B1AJZ9 1412 aa15.45■□□□□ 0.06
SCFD1-202ENST00000396629 BIVM-ERCC5R4GMW8 1640 aa15.43■□□□□ 0.06
SCFD1-202ENST00000396629 TOP2BQ02880 1626 aa15.41■□□□□ 0.06
SCFD1-202ENST00000396629 ERICH3Q5RHP9 1530 aa15.41■□□□□ 0.06
SCFD1-202ENST00000396629 PRG4Q92954 1404 aaPredicted RBP15.38■□□□□ 0.05
SCFD1-202ENST00000396629 JPH4Q96JJ6 628 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms