RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 ATN1P54259 1190 aaPredicted RBP7.29□□□□□ -1.24
ATG4A-204ENST00000372246 CFTRP13569 1480 aa7.28□□□□□ -1.24
ATG4A-204ENST00000372246 HFM1A2PYH4 1435 aa7.28□□□□□ -1.24
ATG4A-204ENST00000372246 PDE4AP27815 886 aa7.28□□□□□ -1.24
ATG4A-204ENST00000372246 ZNF644Q9H582 1327 aaPredicted RBP7.28□□□□□ -1.24
ATG4A-204ENST00000372246 ERICH6BQ5W0A0 696 aa7.28□□□□□ -1.24
ATG4A-204ENST00000372246 FGD5Q6ZNL6 1462 aa7.27□□□□□ -1.25
ATG4A-204ENST00000372246 TTLL13PA6NNM8 815 aa7.27□□□□□ -1.25
ATG4A-204ENST00000372246 CIZ1Q9ULV3 898 aaPredicted RBP7.27□□□□□ -1.25
ATG4A-204ENST00000372246 NCOA1Q15788 1441 aa7.27□□□□□ -1.25
ATG4A-204ENST00000372246 NCOA2Q15596 1464 aa7.27□□□□□ -1.25
ATG4A-204ENST00000372246 MYT1LQ9UL68 1186 aa7.27□□□□□ -1.25
ATG4A-204ENST00000372246 PCDHB8Q9UN66 801 aa7.27□□□□□ -1.25
ATG4A-204ENST00000372246 DNAJC5Q9H3Z4 198 aa7.26□□□□□ -1.25
ATG4A-204ENST00000372246 TMC1Q8TDI8 760 aa7.26□□□□□ -1.25
ATG4A-204ENST00000372246 ARXQ96QS3 562 aa7.26□□□□□ -1.25
ATG4A-204ENST00000372246 FMN1Q68DA7 1419 aa7.25□□□□□ -1.25
ATG4A-204ENST00000372246 SMG6Q86US8 1419 aaKnown RBP7.25□□□□□ -1.25
ATG4A-204ENST00000372246 KDM2AQ9Y2K7 1162 aa7.25□□□□□ -1.25
ATG4A-204ENST00000372246 C20orf194Q5TEA3 1177 aa7.25□□□□□ -1.25
ATG4A-204ENST00000372246 LHX8Q68G74 356 aa7.25□□□□□ -1.25
ATG4A-204ENST00000372246 MAP3K1Q13233 1512 aa7.24□□□□□ -1.25
ATG4A-204ENST00000372246 DHX29Q7Z478 1369 aaKnown RBP7.24□□□□□ -1.25
ATG4A-204ENST00000372246 CFAP43Q8NDM7 1665 aa7.24□□□□□ -1.25
ATG4A-204ENST00000372246 PNISRQ8TF01 805 aaKnown RBP7.24□□□□□ -1.25
ATG4A-204ENST00000372246 FRAT1Q92837 279 aaPredicted RBP7.24□□□□□ -1.25
ATG4A-204ENST00000372246 RRP1P56182 461 aaKnown RBP7.24□□□□□ -1.25
ATG4A-204ENST00000372246 BACH2Q9BYV9 841 aa7.23□□□□□ -1.25
ATG4A-204ENST00000372246 CASKIN1Q8WXD9 1431 aa7.23□□□□□ -1.25
ATG4A-204ENST00000372246 POTEB2H3BUK9 544 aa7.23□□□□□ -1.25
ATG4A-204ENST00000372246 METRNQ9UJH8 293 aa7.23□□□□□ -1.25
ATG4A-204ENST00000372246 RNF123Q5XPI4 1314 aa7.23□□□□□ -1.25
ATG4A-204ENST00000372246 MAGI3Q5TCQ9 1506 aa7.22□□□□□ -1.25
ATG4A-204ENST00000372246 SLC39A7Q92504 469 aa7.22□□□□□ -1.25
ATG4A-204ENST00000372246 TDRD9Q8NDG6 1382 aaKnown RBP7.22□□□□□ -1.25
ATG4A-204ENST00000372246 MYOM3Q5VTT5 1437 aa7.22□□□□□ -1.25
ATG4A-204ENST00000372246 C7P10643 843 aa7.22□□□□□ -1.25
ATG4A-204ENST00000372246 NFKBIBQ15653 356 aa7.22□□□□□ -1.25
ATG4A-204ENST00000372246 ZNF467Q7Z7K2 595 aaPredicted RBP7.22□□□□□ -1.25
ATG4A-204ENST00000372246 CRBNQ96SW2 442 aa7.22□□□□□ -1.25
ATG4A-204ENST00000372246 TMEM106CQ9BVX2 250 aa7.22□□□□□ -1.25
ATG4A-204ENST00000372246 RCAN3Q9UKA8 241 aa7.22□□□□□ -1.25
ATG4A-204ENST00000372246 POTEFA5A3E0 1075 aa7.21□□□□□ -1.26
ATG4A-204ENST00000372246 FYCO1Q9BQS8 1478 aa7.21□□□□□ -1.26
ATG4A-204ENST00000372246 TRIM35Q9UPQ4 493 aa7.21□□□□□ -1.26
ATG4A-204ENST00000372246 FRAT2O75474 233 aaPredicted RBP7.21□□□□□ -1.26
ATG4A-204ENST00000372246 DCAF11Q8TEB1 546 aa7.21□□□□□ -1.26
ATG4A-204ENST00000372246 NCAPD3P42695 1498 aa7.2□□□□□ -1.26
ATG4A-204ENST00000372246 SNAPC4Q5SXM2 1469 aa7.2□□□□□ -1.26
ATG4A-204ENST00000372246 ZNF777Q9ULD5 760 aaPredicted RBP7.2□□□□□ -1.26
ATG4A-204ENST00000372246 SPATA31E1Q6ZUB1 1445 aa7.2□□□□□ -1.26
ATG4A-204ENST00000372246 LRRIQ1Q96JM4 1722 aa7.2□□□□□ -1.26
ATG4A-204ENST00000372246 CC2D1BQ5T0F9 858 aaKnown RBP7.2□□□□□ -1.26
ATG4A-204ENST00000372246 ST20-MTHFSA0A0A6YYL1 179 aa7.19□□□□□ -1.26
ATG4A-204ENST00000372246 RGS3P49796 1198 aa7.19□□□□□ -1.26
ATG4A-204ENST00000372246 USP47Q96K76 1375 aa7.19□□□□□ -1.26
ATG4A-204ENST00000372246 ANKRD30BQ9BXX2 1392 aa7.19□□□□□ -1.26
ATG4A-204ENST00000372246 BCORL1Q5H9F3 1711 aa7.18□□□□□ -1.26
ATG4A-204ENST00000372246 WASHC2CQ9Y4E1 1318 aa7.18□□□□□ -1.26
ATG4A-204ENST00000372246 RNF25Q96BH1 459 aaPredicted RBP7.18□□□□□ -1.26
ATG4A-204ENST00000372246 PODXL2Q9NZ53 605 aa7.18□□□□□ -1.26
ATG4A-204ENST00000372246 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.18□□□□□ -1.26
ATG4A-204ENST00000372246 TEX14Q8IWB6 1497 aa7.17□□□□□ -1.26
ATG4A-204ENST00000372246 TCERG1O14776 1098 aaKnown RBP7.17□□□□□ -1.26
ATG4A-204ENST00000372246 POTEJP0CG39 1038 aa7.17□□□□□ -1.26
ATG4A-204ENST00000372246 CARD11Q9BXL7 1154 aa7.17□□□□□ -1.26
ATG4A-204ENST00000372246 COLQQ9Y215 455 aaPredicted RBP7.17□□□□□ -1.26
ATG4A-204ENST00000372246 CDK13Q14004 1512 aaKnown RBP7.17□□□□□ -1.26
ATG4A-204ENST00000372246 PSEN1P49768 467 aa7.16□□□□□ -1.26
ATG4A-204ENST00000372246 PKD2Q13563 968 aa7.16□□□□□ -1.26
ATG4A-204ENST00000372246 IER5LQ5T953 404 aa7.16□□□□□ -1.26
ATG4A-204ENST00000372246 NESP48681 1621 aa7.16□□□□□ -1.26
ATG4A-204ENST00000372246 CADPSQ9ULU8 1353 aa7.15□□□□□ -1.26
ATG4A-204ENST00000372246 RPRD2Q5VT52 1461 aaKnown RBP7.15□□□□□ -1.27
ATG4A-204ENST00000372246 PDAP1Q13442 181 aaKnown RBP7.15□□□□□ -1.27
ATG4A-204ENST00000372246 RGL3Q3MIN7 710 aa7.15□□□□□ -1.27
ATG4A-204ENST00000372246 SPRYD3Q8NCJ5 442 aa7.15□□□□□ -1.27
ATG4A-204ENST00000372246 POGKQ9P215 609 aa7.15□□□□□ -1.27
ATG4A-204ENST00000372246 OTUD5Q96G74 571 aa7.13□□□□□ -1.27
ATG4A-204ENST00000372246 PKNOX2Q96KN3 472 aa7.13□□□□□ -1.27
ATG4A-204ENST00000372246 PPM1GO15355 546 aaPredicted RBP7.13□□□□□ -1.27
ATG4A-204ENST00000372246 SEC24BO95487 1268 aa7.13□□□□□ -1.27
ATG4A-204ENST00000372246 SLKQ9H2G2 1235 aaPredicted RBP7.13□□□□□ -1.27
ATG4A-204ENST00000372246 POLA1P09884 1462 aaPredicted RBP7.13□□□□□ -1.27
ATG4A-204ENST00000372246 GRIN2BQ13224 1484 aa7.13□□□□□ -1.27
ATG4A-204ENST00000372246 EFCAB5A4FU69 1503 aa7.13□□□□□ -1.27
ATG4A-204ENST00000372246 IRX5P78411 483 aaPredicted RBP7.12□□□□□ -1.27
ATG4A-204ENST00000372246 NBPF1Q3BBV0 1214 aa7.12□□□□□ -1.27
ATG4A-204ENST00000372246 ARID4BQ4LE39 1312 aaPredicted RBP7.12□□□□□ -1.27
ATG4A-204ENST00000372246 UGGT2Q9NYU1 1516 aa7.12□□□□□ -1.27
ATG4A-204ENST00000372246 C8orf34Q49A92 452 aa7.12□□□□□ -1.27
ATG4A-204ENST00000372246 FANCD2Q9BXW9 1451 aa7.12□□□□□ -1.27
ATG4A-204ENST00000372246 MYBBP1AQ9BQG0 1328 aaKnown RBP7.11□□□□□ -1.27
ATG4A-204ENST00000372246 HECW1Q76N89 1606 aa7.11□□□□□ -1.27
ATG4A-204ENST00000372246 RIOK3O14730 519 aaKnown RBP7.11□□□□□ -1.27
ATG4A-204ENST00000372246 RRAGDQ9NQL2 400 aaPredicted RBP7.11□□□□□ -1.27
ATG4A-204ENST00000372246 LRPPRCP42704 1394 aaKnown RBP7.11□□□□□ -1.27
ATG4A-204ENST00000372246 CCDC146Q8IYE0 955 aa7.1□□□□□ -1.27
ATG4A-204ENST00000372246 GZF1Q9H116 711 aaPredicted RBP7.1□□□□□ -1.27
ATG4A-204ENST00000372246 USP35Q9P2H5 1018 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms