RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 FSD2A1L4K1 749 aa20.47■□□□□ 0.87
RTN3-205ENST00000356000 FAM50AQ14320 339 aaKnown RBP20.45■□□□□ 0.86
RTN3-205ENST00000356000 GOLGA6L3A6NEY3 463 aa20.43■□□□□ 0.86
RTN3-205ENST00000356000 ARHGAP35Q9NRY4 1499 aa20.43■□□□□ 0.86
RTN3-205ENST00000356000 ESPNB1AK53 854 aa20.41■□□□□ 0.86
RTN3-205ENST00000356000 SKAP1Q86WV1 359 aa20.41■□□□□ 0.86
RTN3-205ENST00000356000 LRRC9Q6ZRR7 1453 aa20.4■□□□□ 0.86
RTN3-205ENST00000356000 FAM161AQ3B820 660 aa20.4■□□□□ 0.86
RTN3-205ENST00000356000 RCAN3Q9UKA8 241 aa20.4■□□□□ 0.86
RTN3-205ENST00000356000 KDM4FA0A1W2PPD8 638 aa20.4■□□□□ 0.86
RTN3-205ENST00000356000 PANK2Q9BZ23 570 aa20.4■□□□□ 0.86
RTN3-205ENST00000356000 C8orf34Q49A92 452 aa20.4■□□□□ 0.86
RTN3-205ENST00000356000 ADGRL1O94910 1474 aa20.39■□□□□ 0.86
RTN3-205ENST00000356000 ARAP3Q8WWN8 1544 aa20.38■□□□□ 0.85
RTN3-205ENST00000356000 SAMD9Q5K651 1589 aa20.37■□□□□ 0.85
RTN3-205ENST00000356000 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.36■□□□□ 0.85
RTN3-205ENST00000356000 ARID4BQ4LE39 1312 aaPredicted RBP20.36■□□□□ 0.85
RTN3-205ENST00000356000 POLR1AO95602 1720 aaPredicted RBP20.36■□□□□ 0.85
RTN3-205ENST00000356000 CCDC18Q5T9S5 1454 aa20.35■□□□□ 0.85
RTN3-205ENST00000356000 CD109Q6YHK3 1445 aa20.35■□□□□ 0.85
RTN3-205ENST00000356000 SMAP1Q8IYB5 467 aaPredicted RBP20.35■□□□□ 0.85
RTN3-205ENST00000356000 ERBB4Q15303 1308 aa20.35■□□□□ 0.85
RTN3-205ENST00000356000 PNISRQ8TF01 805 aaKnown RBP20.34■□□□□ 0.85
RTN3-205ENST00000356000 ABCA9Q8IUA7 1624 aa20.34■□□□□ 0.85
RTN3-205ENST00000356000 MAP7D2Q96T17 732 aa20.33■□□□□ 0.85
RTN3-205ENST00000356000 KTN1Q86UP2 1357 aaKnown RBP20.33■□□□□ 0.84
RTN3-205ENST00000356000 KIF7Q2M1P5 1343 aa20.31■□□□□ 0.84
RTN3-205ENST00000356000 BBXQ8WY36 941 aaPredicted RBP20.31■□□□□ 0.84
RTN3-205ENST00000356000 NEO1Q92859 1461 aa20.31■□□□□ 0.84
RTN3-205ENST00000356000 DHX29Q7Z478 1369 aaKnown RBP20.31■□□□□ 0.84
RTN3-205ENST00000356000 KDM2BQ8NHM5 1336 aa20.31■□□□□ 0.84
RTN3-205ENST00000356000 MRE11P49959 708 aa20.3■□□□□ 0.84
RTN3-205ENST00000356000 ARXQ96QS3 562 aa20.3■□□□□ 0.84
RTN3-205ENST00000356000 CFAP74Q9C0B2 1584 aa20.29■□□□□ 0.84
RTN3-205ENST00000356000 GTF2E1P29083 439 aaPredicted RBP20.28■□□□□ 0.84
RTN3-205ENST00000356000 KIAA1211Q6ZU35 1233 aa20.28■□□□□ 0.84
RTN3-205ENST00000356000 COL17A1Q9UMD9 1497 aaPredicted RBP20.28■□□□□ 0.84
RTN3-205ENST00000356000 RAPGEF6Q8TEU7 1601 aa20.27■□□□□ 0.84
RTN3-205ENST00000356000 MYH16Q9H6N6 1097 aa20.27■□□□□ 0.84
RTN3-205ENST00000356000 MYOM3Q5VTT5 1437 aa20.27■□□□□ 0.84
RTN3-205ENST00000356000 SENP3-EIF4A1A0A087X0R7 540 aa20.27■□□□□ 0.84
RTN3-205ENST00000356000 LRPPRCP42704 1394 aaKnown RBP20.27■□□□□ 0.84
RTN3-205ENST00000356000 TAF7LQ5H9L4 462 aa20.26■□□□□ 0.83
RTN3-205ENST00000356000 EFCAB5A4FU69 1503 aa20.26■□□□□ 0.83
RTN3-205ENST00000356000 TERF1P54274 439 aa20.25■□□□□ 0.83
RTN3-205ENST00000356000 NAP1L2Q9ULW6 460 aaPredicted RBP20.25■□□□□ 0.83
RTN3-205ENST00000356000 HFM1A2PYH4 1435 aa20.25■□□□□ 0.83
RTN3-205ENST00000356000 ANTXR1Q9H6X2 564 aa20.24■□□□□ 0.83
RTN3-205ENST00000356000 RIPK4P57078 832 aa20.24■□□□□ 0.83
RTN3-205ENST00000356000 CRBNQ96SW2 442 aa20.24■□□□□ 0.83
RTN3-205ENST00000356000 CENPQQ7L2Z9 268 aaPredicted RBP20.23■□□□□ 0.83
RTN3-205ENST00000356000 PTPN23Q9H3S7 1636 aa20.22■□□□□ 0.83
RTN3-205ENST00000356000 PDE3BQ13370 1112 aa20.22■□□□□ 0.83
RTN3-205ENST00000356000 STAC3Q96MF2 364 aa20.22■□□□□ 0.83
RTN3-205ENST00000356000 SPATA31E1Q6ZUB1 1445 aa20.22■□□□□ 0.83
RTN3-205ENST00000356000 ATP10BO94823 1461 aa20.22■□□□□ 0.83
RTN3-205ENST00000356000 BECN1Q14457 450 aa20.22■□□□□ 0.83
RTN3-205ENST00000356000 UTP14CQ5TAP6 766 aaKnown RBP20.22■□□□□ 0.83
RTN3-205ENST00000356000 ISY1Q9ULR0 285 aaKnown RBP20.21■□□□□ 0.83
RTN3-205ENST00000356000 NCLP19338 710 aaKnown RBP20.2■□□□□ 0.82
RTN3-205ENST00000356000 GRPEL1Q9HAV7 217 aa20.2■□□□□ 0.82
RTN3-205ENST00000356000 CANXP27824 592 aaKnown RBP20.19■□□□□ 0.82
RTN3-205ENST00000356000 TRIM44Q96DX7 344 aaPredicted RBP20.19■□□□□ 0.82
RTN3-205ENST00000356000 SLKQ9H2G2 1235 aaPredicted RBP20.19■□□□□ 0.82
RTN3-205ENST00000356000 USP19O94966 1318 aa20.19■□□□□ 0.82
RTN3-205ENST00000356000 TMC1Q8TDI8 760 aa20.19■□□□□ 0.82
RTN3-205ENST00000356000 ZHX1Q9UKY1 873 aaPredicted RBP20.19■□□□□ 0.82
RTN3-205ENST00000356000 OFD1O75665 1012 aa20.17■□□□□ 0.82
RTN3-205ENST00000356000 PLIN1O60240 522 aa20.17■□□□□ 0.82
RTN3-205ENST00000356000 VIRMAQ69YN4 1812 aaKnown RBP20.16■□□□□ 0.82
RTN3-205ENST00000356000 MCM4P33991 863 aa20.16■□□□□ 0.82
RTN3-205ENST00000356000 GZF1Q9H116 711 aaPredicted RBP20.16■□□□□ 0.82
RTN3-205ENST00000356000 DMTNQ08495 405 aa20.15■□□□□ 0.82
RTN3-205ENST00000356000 HECW2Q9P2P5 1572 aa20.15■□□□□ 0.82
RTN3-205ENST00000356000 MTERF4Q7Z6M4 381 aaKnown RBP20.14■□□□□ 0.82
RTN3-205ENST00000356000 IPO4Q8TEX9 1081 aaKnown RBP20.14■□□□□ 0.81
RTN3-205ENST00000356000 CHMP4BQ9H444 224 aaKnown RBP20.13■□□□□ 0.81
RTN3-205ENST00000356000 FAM13BQ9NYF5 915 aa20.13■□□□□ 0.81
RTN3-205ENST00000356000 ADAMTSL3P82987 1691 aa20.13■□□□□ 0.81
RTN3-205ENST00000356000 NAIPQ13075 1403 aa20.13■□□□□ 0.81
RTN3-205ENST00000356000 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.12■□□□□ 0.81
RTN3-205ENST00000356000 FMN1Q68DA7 1419 aa20.12■□□□□ 0.81
RTN3-205ENST00000356000 L3MBTL2Q969R5 705 aa20.11■□□□□ 0.81
RTN3-205ENST00000356000 TRAK2O60296 914 aa20.1■□□□□ 0.81
RTN3-205ENST00000356000 CNGB1Q14028 1251 aaPredicted RBP20.1■□□□□ 0.81
RTN3-205ENST00000356000 PTPRKQ15262 1439 aa20.1■□□□□ 0.81
RTN3-205ENST00000356000 ZMYM4Q5VZL5 1548 aa20.09■□□□□ 0.81
RTN3-205ENST00000356000 BRD4O60885 1362 aaPredicted RBP20.09■□□□□ 0.81
RTN3-205ENST00000356000 MAGI2Q86UL8 1455 aa20.09■□□□□ 0.81
RTN3-205ENST00000356000 ARHGEF40Q8TER5 1519 aa20.08■□□□□ 0.81
RTN3-205ENST00000356000 NUP153P49790 1475 aaKnown RBP20.08■□□□□ 0.8
RTN3-205ENST00000356000 DENND4BO75064 1496 aaPredicted RBP20.07■□□□□ 0.8
RTN3-205ENST00000356000 FHOD3Q2V2M9 1422 aa20.06■□□□□ 0.8
RTN3-205ENST00000356000 FGD6Q6ZV73 1430 aa20.06■□□□□ 0.8
RTN3-205ENST00000356000 BCORL1Q5H9F3 1711 aa20.05■□□□□ 0.8
RTN3-205ENST00000356000 MIA2Q96PC5 1412 aa20.05■□□□□ 0.8
RTN3-205ENST00000356000 NBPF8Q3BBV2 869 aa20.05■□□□□ 0.8
RTN3-205ENST00000356000 ZSCAN30Q86W11 494 aa20.05■□□□□ 0.8
RTN3-205ENST00000356000 PRDM10Q9NQV6 1147 aa20.05■□□□□ 0.8
RTN3-205ENST00000356000 FRMPD1Q5SYB0 1578 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms