RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 NISCHQ9Y2I1 1504 aa30.25■■■□□ 2.43
RTN3-205ENST00000356000 CCDC180Q9P1Z9 1646 aa27.52■■■□□ 2
RTN3-205ENST00000356000 PELP1Q8IZL8 1130 aaKnown RBP27.36■■□□□ 1.97
RTN3-205ENST00000356000 ABCC9O60706 1549 aa26.98■■□□□ 1.91
RTN3-205ENST00000356000 HRCP23327 699 aa26.92■■□□□ 1.9
RTN3-205ENST00000356000 MYT1Q01538 1121 aa26.61■■□□□ 1.85
RTN3-205ENST00000356000 PPARGC1BQ86YN6 1023 aaKnown RBP26.13■■□□□ 1.77
RTN3-205ENST00000356000 RB1CC1Q8TDY2 1594 aa26.1■■□□□ 1.77
RTN3-205ENST00000356000 NACADO15069 1562 aa25.96■■□□□ 1.75
RTN3-205ENST00000356000 SCAF1Q9H7N4 1312 aaKnown RBP25.87■■□□□ 1.73
RTN3-205ENST00000356000 PCGF6Q9BYE7 350 aa25.78■■□□□ 1.72
RTN3-205ENST00000356000 MYO15BQ96JP2 1530 aa25.78■■□□□ 1.72
RTN3-205ENST00000356000 SHROOM4Q9ULL8 1493 aa25.37■■□□□ 1.65
RTN3-205ENST00000356000 DCAF1Q9Y4B6 1507 aa25.33■■□□□ 1.65
RTN3-205ENST00000356000 UNC13AQ9UPW8 1703 aa25.28■■□□□ 1.64
RTN3-205ENST00000356000 TTBK1Q5TCY1 1321 aaPredicted RBP25.28■■□□□ 1.64
RTN3-205ENST00000356000 DNAJC5BQ9UF47 199 aa25.17■■□□□ 1.62
RTN3-205ENST00000356000 BICRAQ9NZM4 1560 aa25.13■■□□□ 1.61
RTN3-205ENST00000356000 ZCCHC6Q5VYS8 1495 aaKnown RBP25.1■■□□□ 1.61
RTN3-205ENST00000356000 ZEB1P37275 1124 aaPredicted RBP25.03■■□□□ 1.6
RTN3-205ENST00000356000 ACIN1Q9UKV3 1341 aaKnown RBP25.02■■□□□ 1.6
RTN3-205ENST00000356000 DCAF8L2P0C7V8 631 aa24.95■■□□□ 1.58
RTN3-205ENST00000356000 PABPN1Q86U42 306 aaKnown RBP eCLIP24.9■■□□□ 1.58
RTN3-205ENST00000356000 CHIC1Q5VXU3 224 aa24.88■■□□□ 1.57
RTN3-205ENST00000356000 TRIM26Q12899 539 aaPredicted RBP24.87■■□□□ 1.57
RTN3-205ENST00000356000 NEUROD1Q13562 356 aa24.85■■□□□ 1.57
RTN3-205ENST00000356000 SUPT5HO00267 1087 aaKnown RBP24.8■■□□□ 1.56
RTN3-205ENST00000356000 GTF3C3Q9Y5Q9 886 aa24.78■■□□□ 1.56
RTN3-205ENST00000356000 BCL11AQ9H165 835 aa24.59■■□□□ 1.53
RTN3-205ENST00000356000 CC2D2AQ9P2K1 1620 aa24.57■■□□□ 1.52
RTN3-205ENST00000356000 CENPBP07199 599 aaPredicted RBP24.56■■□□□ 1.52
RTN3-205ENST00000356000 SCRIBQ14160 1630 aa24.56■■□□□ 1.52
RTN3-205ENST00000356000 EIF4G1Q04637 1599 aaKnown RBP24.56■■□□□ 1.52
RTN3-205ENST00000356000 CECR2Q9BXF3 1484 aa24.5■■□□□ 1.51
RTN3-205ENST00000356000 FAM9AQ8IZU1 332 aaPredicted RBP24.36■■□□□ 1.49
RTN3-205ENST00000356000 PRKCSHP14314 528 aaPredicted RBP24.28■■□□□ 1.48
RTN3-205ENST00000356000 LOC105371045A0A1W2PR82 267 aa24.27■■□□□ 1.48
RTN3-205ENST00000356000 ANP32EQ9BTT0 268 aa24.09■■□□□ 1.45
RTN3-205ENST00000356000 DIEXFQ68CQ4 756 aaKnown RBP24.08■■□□□ 1.45
RTN3-205ENST00000356000 NCAPD3P42695 1498 aa23.85■■□□□ 1.41
RTN3-205ENST00000356000 ERICH6Q7L0X2 663 aa23.82■■□□□ 1.4
RTN3-205ENST00000356000 CSRNP3Q8WYN3 585 aa23.79■■□□□ 1.4
RTN3-205ENST00000356000 CUX2O14529 1486 aa23.78■■□□□ 1.4
RTN3-205ENST00000356000 HMGXB3Q12766 1538 aa23.78■■□□□ 1.4
RTN3-205ENST00000356000 SMARCA2P51531 1590 aa23.76■■□□□ 1.39
RTN3-205ENST00000356000 TRIM41Q8WV44 630 aa23.71■■□□□ 1.39
RTN3-205ENST00000356000 SMARCA4P51532 1647 aa23.64■■□□□ 1.37
RTN3-205ENST00000356000 ATAD2BQ9ULI0 1458 aa23.63■■□□□ 1.37
RTN3-205ENST00000356000 APLP2Q06481 763 aa23.62■■□□□ 1.37
RTN3-205ENST00000356000 YTHDC1Q96MU7 727 aaKnown RBP23.62■■□□□ 1.37
RTN3-205ENST00000356000 PEG3Q9GZU2 1588 aa23.61■■□□□ 1.37
RTN3-205ENST00000356000 BAZ1AQ9NRL2 1556 aaPredicted RBP23.6■■□□□ 1.37
RTN3-205ENST00000356000 CCER1Q8TC90 406 aaPredicted RBP23.6■■□□□ 1.37
RTN3-205ENST00000356000 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.58■■□□□ 1.37
RTN3-205ENST00000356000 TSHZ2Q9NRE2 1034 aa23.58■■□□□ 1.37
RTN3-205ENST00000356000 DNAJC5Q9H3Z4 198 aa23.55■■□□□ 1.36
RTN3-205ENST00000356000 CLSPNQ9HAW4 1339 aa23.54■■□□□ 1.36
RTN3-205ENST00000356000 ERCC6Q03468 1493 aa23.48■■□□□ 1.35
RTN3-205ENST00000356000 ZNF316A6NFI3 1004 aaPredicted RBP23.46■■□□□ 1.35
RTN3-205ENST00000356000 SUPT16HQ9Y5B9 1047 aaKnown RBP23.44■■□□□ 1.34
RTN3-205ENST00000356000 BAZ1BQ9UIG0 1483 aaKnown RBP23.41■■□□□ 1.34
RTN3-205ENST00000356000 LAMC3Q9Y6N6 1575 aa23.41■■□□□ 1.34
RTN3-205ENST00000356000 MIER1Q8N108 512 aa23.36■■□□□ 1.33
RTN3-205ENST00000356000 THOC2Q8NI27 1593 aaKnown RBP23.23■■□□□ 1.31
RTN3-205ENST00000356000 PDS5BQ9NTI5 1447 aa23.19■■□□□ 1.3
RTN3-205ENST00000356000 MROH2BQ7Z745 1585 aa23.12■■□□□ 1.29
RTN3-205ENST00000356000 NESP48681 1621 aa23.09■■□□□ 1.29
RTN3-205ENST00000356000 CADPSQ9ULU8 1353 aa23.01■■□□□ 1.27
RTN3-205ENST00000356000 KIF21AQ7Z4S6 1674 aa23.01■■□□□ 1.27
RTN3-205ENST00000356000 MRC2Q9UBG0 1479 aa22.97■■□□□ 1.27
RTN3-205ENST00000356000 WDR62O43379 1518 aa22.96■■□□□ 1.27
RTN3-205ENST00000356000 RBM19Q9Y4C8 960 aaKnown RBP22.93■■□□□ 1.26
RTN3-205ENST00000356000 ANO8Q9HCE9 1232 aaPredicted RBP22.92■■□□□ 1.26
RTN3-205ENST00000356000 MYT1LQ9UL68 1186 aa22.83■■□□□ 1.25
RTN3-205ENST00000356000 CEP164Q9UPV0 1460 aa22.82■■□□□ 1.24
RTN3-205ENST00000356000 MSH5O43196 834 aa22.82■■□□□ 1.24
RTN3-205ENST00000356000 WIZO95785 1651 aa22.82■■□□□ 1.24
RTN3-205ENST00000356000 TOP2AP11388 1531 aaKnown RBP22.8■■□□□ 1.24
RTN3-205ENST00000356000 CFTRP13569 1480 aa22.78■■□□□ 1.24
RTN3-205ENST00000356000 PRDM2Q13029 1718 aa22.75■■□□□ 1.23
RTN3-205ENST00000356000 FANCD2Q9BXW9 1451 aa22.71■■□□□ 1.23
RTN3-205ENST00000356000 EHMT2Q96KQ7 1210 aa22.69■■□□□ 1.22
RTN3-205ENST00000356000 UBE2Q2Q8WVN8 375 aa22.67■■□□□ 1.22
RTN3-205ENST00000356000 DEKP35659 375 aaKnown RBP22.65■■□□□ 1.22
RTN3-205ENST00000356000 RSF1Q96T23 1441 aaPredicted RBP22.65■■□□□ 1.22
RTN3-205ENST00000356000 FANCIQ9NVI1 1328 aa22.64■■□□□ 1.21
RTN3-205ENST00000356000 ERICH6BQ5W0A0 696 aa22.64■■□□□ 1.21
RTN3-205ENST00000356000 BCANQ96GW7 911 aa22.64■■□□□ 1.21
RTN3-205ENST00000356000 SALL2Q9Y467 1007 aaPredicted RBP22.6■■□□□ 1.21
RTN3-205ENST00000356000 WRNQ14191 1432 aaPredicted RBP eCLIP22.59■■□□□ 1.21
RTN3-205ENST00000356000 FKBP8Q14318 412 aa22.56■■□□□ 1.2
RTN3-205ENST00000356000 ABCC8Q09428 1581 aa22.55■■□□□ 1.2
RTN3-205ENST00000356000 URB2Q14146 1524 aaKnown RBP22.47■■□□□ 1.19
RTN3-205ENST00000356000 IFT140Q96RY7 1462 aa22.46■■□□□ 1.19
RTN3-205ENST00000356000 CCDC136Q96JN2 1154 aa22.39■■□□□ 1.17
RTN3-205ENST00000356000 OSCARQ8IYS5 282 aa22.37■■□□□ 1.17
RTN3-205ENST00000356000 WDR97A6NE52 1622 aa22.35■■□□□ 1.17
RTN3-205ENST00000356000 NEFLP07196 543 aa22.35■■□□□ 1.17
RTN3-205ENST00000356000 CCDC88BA6NC98 1476 aa22.33■■□□□ 1.16
RTN3-205ENST00000356000 DNMBPQ6XZF7 1577 aa22.33■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms