RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 DCAF11Q8TEB1 546 aa24.12■■□□□ 1.45
DDX28-201ENST00000332395 SUPT16HQ9Y5B9 1047 aaKnown RBP24.12■■□□□ 1.45
DDX28-201ENST00000332395 KDM2AQ9Y2K7 1162 aa24.12■■□□□ 1.45
DDX28-201ENST00000332395 ABCA9Q8IUA7 1624 aa24.1■■□□□ 1.45
DDX28-201ENST00000332395 RTEL1-TNFRSF6BF6WH68 1400 aa24.09■■□□□ 1.45
DDX28-201ENST00000332395 ZFYVE16Q7Z3T8 1539 aa24.09■■□□□ 1.45
DDX28-201ENST00000332395 CARD11Q9BXL7 1154 aa24.09■■□□□ 1.45
DDX28-201ENST00000332395 PRKRIP1Q9H875 184 aaPredicted RBP24.09■■□□□ 1.45
DDX28-201ENST00000332395 SPAG9O60271 1321 aaKnown RBP24.09■■□□□ 1.45
DDX28-201ENST00000332395 FANCAO15360 1455 aa24.06■■□□□ 1.44
DDX28-201ENST00000332395 ARID4BQ4LE39 1312 aaPredicted RBP24.06■■□□□ 1.44
DDX28-201ENST00000332395 AFAP1Q8N556 730 aa24.06■■□□□ 1.44
DDX28-201ENST00000332395 ATP10AO60312 1499 aa24.05■■□□□ 1.44
DDX28-201ENST00000332395 ASXL2Q76L83 1435 aa24.04■■□□□ 1.44
DDX28-201ENST00000332395 PRAG1Q86YV5 1406 aa24.03■■□□□ 1.44
DDX28-201ENST00000332395 TRPM1Q7Z4N2 1603 aa24.02■■□□□ 1.44
DDX28-201ENST00000332395 ROCK2O75116 1388 aaKnown RBP24.02■■□□□ 1.43
DDX28-201ENST00000332395 A2MP01023 1474 aa24.01■■□□□ 1.43
DDX28-201ENST00000332395 OSCARQ8IYS5 282 aa24.01■■□□□ 1.43
DDX28-201ENST00000332395 INO80Q9ULG1 1556 aaPredicted RBP24■■□□□ 1.43
DDX28-201ENST00000332395 RGL3Q3MIN7 710 aa24■■□□□ 1.43
DDX28-201ENST00000332395 CCDC184Q52MB2 194 aa23.99■■□□□ 1.43
DDX28-201ENST00000332395 ATP7AQ04656 1500 aa23.99■■□□□ 1.43
DDX28-201ENST00000332395 ADGRL1O94910 1474 aa23.98■■□□□ 1.43
DDX28-201ENST00000332395 DHX29Q7Z478 1369 aaKnown RBP23.98■■□□□ 1.43
DDX28-201ENST00000332395 POLR3GLQ9BT43 218 aa23.98■■□□□ 1.43
DDX28-201ENST00000332395 HNRNPUQ00839 825 aaKnown RBP eCLIP23.98■■□□□ 1.43
DDX28-201ENST00000332395 ST20-MTHFSA0A0A6YYL1 179 aa23.97■■□□□ 1.43
DDX28-201ENST00000332395 DEPDC5O75140 1603 aa23.97■■□□□ 1.43
DDX28-201ENST00000332395 E9PCH4 1651 aa23.95■■□□□ 1.43
DDX28-201ENST00000332395 SCAPERQ9BY12 1400 aa23.95■■□□□ 1.42
DDX28-201ENST00000332395 MRS2Q9HD23 443 aa23.93■■□□□ 1.42
DDX28-201ENST00000332395 GPRASP1Q5JY77 1395 aa23.92■■□□□ 1.42
DDX28-201ENST00000332395 EIF2AK4Q9P2K8 1649 aaKnown RBP23.91■■□□□ 1.42
DDX28-201ENST00000332395 LAMC1P11047 1609 aa23.9■■□□□ 1.42
DDX28-201ENST00000332395 NPM1P06748 294 aaKnown RBP eCLIP23.9■■□□□ 1.42
DDX28-201ENST00000332395 NBPF1Q3BBV0 1214 aa23.89■■□□□ 1.41
DDX28-201ENST00000332395 TRPM2O94759 1503 aa23.89■■□□□ 1.41
DDX28-201ENST00000332395 TET3O43151 1660 aa23.88■■□□□ 1.41
DDX28-201ENST00000332395 VWDEQ8N2E2 1590 aa23.87■■□□□ 1.41
DDX28-201ENST00000332395 SPHKAPQ2M3C7 1700 aa23.87■■□□□ 1.41
DDX28-201ENST00000332395 FKBP8Q14318 412 aa23.86■■□□□ 1.41
DDX28-201ENST00000332395 PRDM15P57071 1507 aaPredicted RBP23.86■■□□□ 1.41
DDX28-201ENST00000332395 FAM9BQ8IZU0 186 aa23.86■■□□□ 1.41
DDX28-201ENST00000332395 MYT1LQ9UL68 1186 aa23.86■■□□□ 1.41
DDX28-201ENST00000332395 KANK1Q14678 1352 aa23.85■■□□□ 1.41
DDX28-201ENST00000332395 PTPRTO14522 1441 aa23.85■■□□□ 1.41
DDX28-201ENST00000332395 NEFLP07196 543 aa23.84■■□□□ 1.41
DDX28-201ENST00000332395 CEP152O94986 1710 aa23.83■■□□□ 1.41
DDX28-201ENST00000332395 KIF3BO15066 747 aa23.83■■□□□ 1.41
DDX28-201ENST00000332395 KIDINS220Q9ULH0 1771 aa23.83■■□□□ 1.41
DDX28-201ENST00000332395 ZNF518AQ6AHZ1 1483 aa23.82■■□□□ 1.4
DDX28-201ENST00000332395 CLTCL1P53675 1640 aa23.81■■□□□ 1.4
DDX28-201ENST00000332395 MROH1Q8NDA8 1641 aa23.81■■□□□ 1.4
DDX28-201ENST00000332395 RNF17Q9BXT8 1623 aaKnown RBP23.81■■□□□ 1.4
DDX28-201ENST00000332395 CFAP74Q9C0B2 1584 aa23.8■■□□□ 1.4
DDX28-201ENST00000332395 CNGB1Q14028 1251 aaPredicted RBP23.79■■□□□ 1.4
DDX28-201ENST00000332395 CD109Q6YHK3 1445 aa23.79■■□□□ 1.4
DDX28-201ENST00000332395 MADDQ8WXG6 1647 aa23.78■■□□□ 1.4
DDX28-201ENST00000332395 COL17A1Q9UMD9 1497 aaPredicted RBP23.77■■□□□ 1.39
DDX28-201ENST00000332395 BCANQ96GW7 911 aa23.76■■□□□ 1.39
DDX28-201ENST00000332395 ZBED9Q6R2W3 1325 aa23.75■■□□□ 1.39
DDX28-201ENST00000332395 TESK2Q96S53 571 aa23.74■■□□□ 1.39
DDX28-201ENST00000332395 POGZQ7Z3K3 1410 aa23.74■■□□□ 1.39
DDX28-201ENST00000332395 STAC3Q96MF2 364 aa23.72■■□□□ 1.39
DDX28-201ENST00000332395 EFCAB6Q5THR3 1501 aa23.72■■□□□ 1.39
DDX28-201ENST00000332395 KTN1Q86UP2 1357 aaKnown RBP23.72■■□□□ 1.39
DDX28-201ENST00000332395 DISP3Q9P2K9 1392 aa23.71■■□□□ 1.39
DDX28-201ENST00000332395 NEURL4Q96JN8 1562 aa23.7■■□□□ 1.39
DDX28-201ENST00000332395 MLH3Q9UHC1 1453 aa23.69■■□□□ 1.38
DDX28-201ENST00000332395 TSHZ2Q9NRE2 1034 aa23.68■■□□□ 1.38
DDX28-201ENST00000332395 HECW2Q9P2P5 1572 aa23.68■■□□□ 1.38
DDX28-201ENST00000332395 LMTK2Q8IWU2 1503 aa23.68■■□□□ 1.38
DDX28-201ENST00000332395 RALBP1Q15311 655 aa23.68■■□□□ 1.38
DDX28-201ENST00000332395 IQGAP1P46940 1657 aa23.68■■□□□ 1.38
DDX28-201ENST00000332395 PPRC1Q5VV67 1664 aaKnown RBP23.68■■□□□ 1.38
DDX28-201ENST00000332395 TMF1P82094 1093 aa23.66■■□□□ 1.38
DDX28-201ENST00000332395 MYBBP1AQ9BQG0 1328 aaKnown RBP23.66■■□□□ 1.38
DDX28-201ENST00000332395 UGGT1Q9NYU2 1555 aa23.66■■□□□ 1.38
DDX28-201ENST00000332395 TMC1Q8TDI8 760 aa23.65■■□□□ 1.38
DDX28-201ENST00000332395 FRMPD1Q5SYB0 1578 aa23.65■■□□□ 1.38
DDX28-201ENST00000332395 PNISRQ8TF01 805 aaKnown RBP23.64■■□□□ 1.37
DDX28-201ENST00000332395 BRD4O60885 1362 aaPredicted RBP23.63■■□□□ 1.37
DDX28-201ENST00000332395 NEO1Q92859 1461 aa23.63■■□□□ 1.37
DDX28-201ENST00000332395 PER1O15534 1290 aaPredicted RBP23.62■■□□□ 1.37
DDX28-201ENST00000332395 KIF1BO60333 1816 aa23.62■■□□□ 1.37
DDX28-201ENST00000332395 KIAA1210Q9ULL0 1709 aa23.61■■□□□ 1.37
DDX28-201ENST00000332395 SCAF11Q99590 1463 aaKnown RBP23.61■■□□□ 1.37
DDX28-201ENST00000332395 PARD3Q8TEW0 1356 aa23.61■■□□□ 1.37
DDX28-201ENST00000332395 ABCA6Q8N139 1617 aa23.6■■□□□ 1.37
DDX28-201ENST00000332395 MYOM2P54296 1465 aa23.59■■□□□ 1.37
DDX28-201ENST00000332395 MAP3K4Q9Y6R4 1608 aa23.58■■□□□ 1.37
DDX28-201ENST00000332395 WASHC2CQ9Y4E1 1318 aa23.57■■□□□ 1.36
DDX28-201ENST00000332395 MROH2AA6NES4 1674 aa23.56■■□□□ 1.36
DDX28-201ENST00000332395 LRPPRCP42704 1394 aaKnown RBP23.56■■□□□ 1.36
DDX28-201ENST00000332395 IFT172Q9UG01 1749 aa23.56■■□□□ 1.36
DDX28-201ENST00000332395 PANK3Q9H999 370 aa23.56■■□□□ 1.36
DDX28-201ENST00000332395 ANP32EQ9BTT0 268 aa23.55■■□□□ 1.36
DDX28-201ENST00000332395 NLRP13Q86W25 1043 aa23.54■■□□□ 1.36
DDX28-201ENST00000332395 NPATQ14207 1427 aa23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms