RNA–Protein interactions for RNA: ENST00000242776.8

DDX39A-201, Transcript of DExD-box helicase 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX39A, Length 1,471 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-201ENST00000242776 MBD5Q9P267 1494 aa22.23■■□□□ 1.15
DDX39A-201ENST00000242776 TNRQ92752 1358 aa22.22■■□□□ 1.15
DDX39A-201ENST00000242776 SENP3Q9H4L4 574 aaPredicted RBP22.22■■□□□ 1.15
DDX39A-201ENST00000242776 NEURL4Q96JN8 1562 aa22.21■■□□□ 1.15
DDX39A-201ENST00000242776 EHBP1L1Q8N3D4 1523 aa22.21■■□□□ 1.15
DDX39A-201ENST00000242776 DHX29Q7Z478 1369 aaKnown RBP22.2■■□□□ 1.14
DDX39A-201ENST00000242776 MED1Q15648 1581 aaPredicted RBP22.18■■□□□ 1.14
DDX39A-201ENST00000242776 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.18■■□□□ 1.144e-9■□□□□ 10.2
DDX39A-201ENST00000242776 TOM1O60784 492 aa22.17■■□□□ 1.14
DDX39A-201ENST00000242776 SHANK2Q9UPX8 1470 aa22.17■■□□□ 1.14
DDX39A-201ENST00000242776 WASHC2CQ9Y4E1 1318 aa22.17■■□□□ 1.14
DDX39A-201ENST00000242776 RTEL1-TNFRSF6BF6WH68 1400 aa22.17■■□□□ 1.14
DDX39A-201ENST00000242776 KDM5DQ9BY66 1539 aa22.17■■□□□ 1.14
DDX39A-201ENST00000242776 CPS1P31327 1500 aa22.15■■□□□ 1.14
DDX39A-201ENST00000242776 PZPP20742 1482 aa22.15■■□□□ 1.14
DDX39A-201ENST00000242776 CAMSAP2Q08AD1 1489 aa22.14■■□□□ 1.13
DDX39A-201ENST00000242776 CCDC141Q6ZP82 1450 aa22.14■■□□□ 1.13
DDX39A-201ENST00000242776 ANKLE2Q86XL3 938 aa22.14■■□□□ 1.13
DDX39A-201ENST00000242776 CEP162Q5TB80 1403 aa22.13■■□□□ 1.13
DDX39A-201ENST00000242776 VWDEQ8N2E2 1590 aa22.11■■□□□ 1.13
DDX39A-201ENST00000242776 UGGT1Q9NYU2 1555 aa22.1■■□□□ 1.13
DDX39A-201ENST00000242776 NCOA2Q15596 1464 aa22.09■■□□□ 1.13
DDX39A-201ENST00000242776 THEMISQ8N1K5 641 aaPredicted RBP22.09■■□□□ 1.13
DDX39A-201ENST00000242776 CFAP65Q6ZU64 1925 aaKnown RBP22.09■■□□□ 1.13
DDX39A-201ENST00000242776 NPHP4O75161 1426 aaPredicted RBP22.09■■□□□ 1.13
DDX39A-201ENST00000242776 MIA2Q96PC5 1412 aa22.08■■□□□ 1.13
DDX39A-201ENST00000242776 PHF23Q9BUL5 403 aaPredicted RBP22.08■■□□□ 1.12
DDX39A-201ENST00000242776 FAM135AQ9P2D6 1515 aa22.07■■□□□ 1.12
DDX39A-201ENST00000242776 IQGAP1P46940 1657 aa22.06■■□□□ 1.12
DDX39A-201ENST00000242776 STRCP1A6NGW2 1772 aa22.05■■□□□ 1.12
DDX39A-201ENST00000242776 NLRP1Q9C000 1473 aa22.04■■□□□ 1.12
DDX39A-201ENST00000242776 ALKQ9UM73 1620 aa22.04■■□□□ 1.12
DDX39A-201ENST00000242776 TSPY4P0CV99 314 aa22.03■■□□□ 1.12
DDX39A-201ENST00000242776 TSPY10P0CW01 314 aa22.03■■□□□ 1.12
DDX39A-201ENST00000242776 DEPDC5O75140 1603 aa22.03■■□□□ 1.12
DDX39A-201ENST00000242776 RSPH4AQ5TD94 716 aa22.01■■□□□ 1.11
DDX39A-201ENST00000242776 MED14O60244 1454 aa22■■□□□ 1.11
DDX39A-201ENST00000242776 ARHGEF5Q12774 1597 aa21.99■■□□□ 1.11
DDX39A-201ENST00000242776 CEP152O94986 1710 aa21.99■■□□□ 1.11
DDX39A-201ENST00000242776 ABCC3O15438 1527 aa21.98■■□□□ 1.11
DDX39A-201ENST00000242776 LRRC7Q96NW7 1537 aa21.97■■□□□ 1.11
DDX39A-201ENST00000242776 RNF17Q9BXT8 1623 aaKnown RBP21.97■■□□□ 1.11
DDX39A-201ENST00000242776 ZC3H13Q5T200 1668 aaKnown RBP21.95■■□□□ 1.1
DDX39A-201ENST00000242776 ERVK-7P63135 1459 aa21.95■■□□□ 1.1
DDX39A-201ENST00000242776 UBR1Q8IWV7 1749 aa21.93■■□□□ 1.1
DDX39A-201ENST00000242776 SYNMO15061 1565 aa21.91■■□□□ 1.1
DDX39A-201ENST00000242776 MROH1Q8NDA8 1641 aa21.91■■□□□ 1.1
DDX39A-201ENST00000242776 MAST1Q9Y2H9 1570 aa21.9■■□□□ 1.1
DDX39A-201ENST00000242776 EIF2AK4Q9P2K8 1649 aaKnown RBP21.89■■□□□ 1.09
DDX39A-201ENST00000242776 LRRC9Q6ZRR7 1453 aa21.88■■□□□ 1.09
DDX39A-201ENST00000242776 LTKP29376 864 aa21.87■■□□□ 1.09
DDX39A-201ENST00000242776 XIRP1Q702N8 1843 aaKnown RBP21.87■■□□□ 1.09
DDX39A-201ENST00000242776 SCAF11Q99590 1463 aaKnown RBP21.86■■□□□ 1.09
DDX39A-201ENST00000242776 TXNDC2Q86VQ3 553 aa21.86■■□□□ 1.09
DDX39A-201ENST00000242776 KANK4Q5T7N3 995 aaPredicted RBP21.84■■□□□ 1.09
DDX39A-201ENST00000242776 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.84■■□□□ 1.098e-8■■■■□ 19.8
DDX39A-201ENST00000242776 DUOX2Q9NRD8 1548 aa21.8■■□□□ 1.08
DDX39A-201ENST00000242776 RRP7BPQ9NSQ0 103 aa21.8■■□□□ 1.08
DDX39A-201ENST00000242776 RGS17Q9UGC6 210 aaPredicted RBP21.8■■□□□ 1.08
DDX39A-201ENST00000242776 STAG3Q9UJ98 1225 aa21.8■■□□□ 1.08
DDX39A-201ENST00000242776 PIK3C2BO00750 1634 aa21.8■■□□□ 1.08
DDX39A-201ENST00000242776 EID1Q9Y6B2 187 aa21.79■■□□□ 1.08
DDX39A-201ENST00000242776 VPS8Q8N3P4 1428 aa21.79■■□□□ 1.08
DDX39A-201ENST00000242776 LOC105371045A0A1W2PR82 267 aa21.78■■□□□ 1.08
DDX39A-201ENST00000242776 RBM33Q96EV2 1170 aaKnown RBP21.78■■□□□ 1.08
DDX39A-201ENST00000242776 MYOM3Q5VTT5 1437 aa21.78■■□□□ 1.08
DDX39A-201ENST00000242776 ARHGAP23Q9P227 1491 aa21.77■■□□□ 1.08
DDX39A-201ENST00000242776 KIF15Q9NS87 1388 aa21.77■■□□□ 1.08
DDX39A-201ENST00000242776 SLIT1O75093 1534 aa21.77■■□□□ 1.08
DDX39A-201ENST00000242776 CROCC2H7BZ55 1655 aa21.75■■□□□ 1.07
DDX39A-201ENST00000242776 PRDM15P57071 1507 aaPredicted RBP21.74■■□□□ 1.07
DDX39A-201ENST00000242776 SLC26A8Q96RN1 970 aa21.72■■□□□ 1.07
DDX39A-201ENST00000242776 TMEM94Q12767 1356 aa21.71■■□□□ 1.07
DDX39A-201ENST00000242776 TMEM2Q9UHN6 1383 aa21.71■■□□□ 1.07
DDX39A-201ENST00000242776 ABCC5O15440 1437 aa21.7■■□□□ 1.06
DDX39A-201ENST00000242776 ARHGAP31Q2M1Z3 1444 aa21.7■■□□□ 1.06
DDX39A-201ENST00000242776 CHIC2Q9UKJ5 165 aa21.7■■□□□ 1.06
DDX39A-201ENST00000242776 ROBO1Q9Y6N7 1651 aa21.69■■□□□ 1.06
DDX39A-201ENST00000242776 PTPN23Q9H3S7 1636 aa21.69■■□□□ 1.06
DDX39A-201ENST00000242776 POTEAQ6S8J7 498 aa21.69■■□□□ 1.06
DDX39A-201ENST00000242776 PROSER2Q86WR7 435 aaPredicted RBP21.69■■□□□ 1.06
DDX39A-201ENST00000242776 BCANQ96GW7 911 aa21.69■■□□□ 1.06
DDX39A-201ENST00000242776 ERBINQ96RT1 1412 aa21.69■■□□□ 1.06
DDX39A-201ENST00000242776 KANK1Q14678 1352 aa21.68■■□□□ 1.06
DDX39A-201ENST00000242776 EFCAB6Q5THR3 1501 aa21.67■■□□□ 1.06
DDX39A-201ENST00000242776 IDI1Q13907 227 aa21.67■■□□□ 1.06
DDX39A-201ENST00000242776 FAM135BQ49AJ0 1406 aa21.66■■□□□ 1.06
DDX39A-201ENST00000242776 KCNA6P17658 529 aa21.64■■□□□ 1.06
DDX39A-201ENST00000242776 DAPK1P53355 1430 aa21.64■■□□□ 1.05
DDX39A-201ENST00000242776 MAP3K1Q13233 1512 aa21.64■■□□□ 1.05
DDX39A-201ENST00000242776 SETD1AO15047 1707 aaKnown RBP21.63■■□□□ 1.05
DDX39A-201ENST00000242776 TET3O43151 1660 aa21.61■■□□□ 1.05
DDX39A-201ENST00000242776 PHLPP1O60346 1717 aa21.6■■□□□ 1.05
DDX39A-201ENST00000242776 MYO5BQ9ULV0 1848 aa21.6■■□□□ 1.05
DDX39A-201ENST00000242776 KDM5AP29375 1690 aaKnown RBP21.59■■□□□ 1.05
DDX39A-201ENST00000242776 APLP2Q06481 763 aa21.58■■□□□ 1.05
DDX39A-201ENST00000242776 ADGRB3O60242 1522 aa21.58■■□□□ 1.05
DDX39A-201ENST00000242776 ANKRD30AQ9BXX3 1397 aa21.57■■□□□ 1.04
DDX39A-201ENST00000242776 MSH6P52701 1360 aa21.56■■□□□ 1.04
DDX39A-201ENST00000242776 LMTK2Q8IWU2 1503 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms