RNA–Protein interactions for RNA: YFR002W

NIC96, Transcript of Linker nucleoporin component of the nuclear pore complex (NPC), yeastyeast

Gene NIC96, Length 2,520 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIC96YFR002W VPS38Q05919 439 aa2.21□□□□□ -2.06
NIC96YFR002W RIM20Q12033 661 aa2.21□□□□□ -2.06
NIC96YFR002W TY3A-GQ12173 290 aa2.21□□□□□ -2.06
NIC96YFR002W NFI1Q12216 726 aa2.21□□□□□ -2.06
NIC96YFR002W TY3A-IQ99219 290 aa2.21□□□□□ -2.06
NIC96YFR002W TY1B-AO13527 1196 aaKnown RBP2.2□□□□□ -2.06
NIC96YFR002W GAL80P04387 435 aa2.2□□□□□ -2.06
NIC96YFR002W SNT1P25357 1226 aa2.2□□□□□ -2.06
NIC96YFR002W POT1P27796 417 aaKnown RBP RIP-Chip data2.2□□□□□ -2.06not detected
NIC96YFR002W PUP2P32379 260 aa2.2□□□□□ -2.06
NIC96YFR002W YME1P32795 747 aa2.2□□□□□ -2.06
NIC96YFR002W FRE2P36033 711 aa2.2□□□□□ -2.06
NIC96YFR002W RRF1P38771 230 aa2.2□□□□□ -2.06
NIC96YFR002W CAF40P53829 373 aa2.2□□□□□ -2.06
NIC96YFR002W RPA49Q01080 415 aaPredicted RBP2.2□□□□□ -2.06
NIC96YFR002W YPL107WQ02873 248 aa2.2□□□□□ -2.06
NIC96YFR002W AHC1Q12433 566 aa2.2□□□□□ -2.06
NIC96YFR002W AVL9Q12500 764 aa2.2□□□□□ -2.06
NIC96YFR002W DFR1P07807 211 aaKnown RBP RIP-Chip data2.2□□□□□ -2.06not detected
NIC96YFR002W CLB3P24870 427 aa2.2□□□□□ -2.06
NIC96YFR002W DEG1P31115 442 aaKnown RBP2.2□□□□□ -2.06
NIC96YFR002W YBL059WP34224 193 aa2.2□□□□□ -2.06
NIC96YFR002W VID24P38263 362 aa2.2□□□□□ -2.06
NIC96YFR002W GDI1P39958 451 aaKnown RBP2.2□□□□□ -2.06
NIC96YFR002W EFM4P40516 257 aa2.2□□□□□ -2.06
NIC96YFR002W ZIM17P42844 174 aa2.2□□□□□ -2.06
NIC96YFR002W YGR066CP53242 292 aa2.2□□□□□ -2.06
NIC96YFR002W YGR117CP53270 476 aa2.2□□□□□ -2.06
NIC96YFR002W GYL1Q04322 720 aa2.2□□□□□ -2.06
NIC96YFR002W ROY1Q04847 553 aa2.2□□□□□ -2.06
NIC96YFR002W HEL2Q05580 639 aaKnown RBP2.2□□□□□ -2.06
NIC96YFR002W PBA1Q05778 276 aa2.2□□□□□ -2.06
NIC96YFR002W RRP9Q06506 573 aaKnown RBP2.2□□□□□ -2.06
NIC96YFR002W FRE6Q12473 712 aa2.2□□□□□ -2.06
NIC96YFR002W ISY1P21374 235 aaPredicted RBP2.19□□□□□ -2.06
NIC96YFR002W YCR051WP25631 222 aa2.19□□□□□ -2.06
NIC96YFR002W ERV1P27882 189 aa2.19□□□□□ -2.06
NIC96YFR002W NDI1P32340 513 aa2.19□□□□□ -2.06
NIC96YFR002W GLC7P32598 312 aaKnown RBP2.19□□□□□ -2.06
NIC96YFR002W NDT80P38830 627 aa2.19□□□□□ -2.06
NIC96YFR002W SSU1P41930 458 aa2.19□□□□□ -2.06
NIC96YFR002W RPS0BP46654 252 aaKnown RBP2.19□□□□□ -2.06
NIC96YFR002W VTI1Q04338 217 aa2.19□□□□□ -2.06
NIC96YFR002W MRPL35Q06678 367 aa2.19□□□□□ -2.06
NIC96YFR002W RLP24Q07915 199 aaKnown RBP2.19□□□□□ -2.06
NIC96YFR002W THP3Q12049 470 aaKnown RBP2.19□□□□□ -2.06
NIC96YFR002W GPM3Q12326 303 aa2.19□□□□□ -2.06
NIC96YFR002W HSP42Q12329 375 aa2.19□□□□□ -2.06
NIC96YFR002W RRD2Q12461 358 aa2.19□□□□□ -2.06
NIC96YFR002W SSK22P25390 1331 aaPredicted RBP2.19□□□□□ -2.06
NIC96YFR002W FLO1P32768 1537 aa2.19□□□□□ -2.06
NIC96YFR002W RPL40AP0CH08 128 aaKnown RBP2.19□□□□□ -2.06
NIC96YFR002W RPL40BP0CH09 128 aaKnown RBP2.19□□□□□ -2.06
NIC96YFR002W VMA2P16140 517 aaKnown RBP2.19□□□□□ -2.06
NIC96YFR002W MRE11P32829 692 aa2.19□□□□□ -2.06
NIC96YFR002W SWD3P38123 315 aa2.19□□□□□ -2.06
NIC96YFR002W THI2P38141 450 aa2.19□□□□□ -2.06
NIC96YFR002W NAS2P40555 220 aa2.19□□□□□ -2.06
NIC96YFR002W YGR210CP42942 411 aa2.19□□□□□ -2.06
NIC96YFR002W CAF130P53280 1122 aaPredicted RBP2.19□□□□□ -2.06
NIC96YFR002W CWC22P53333 577 aaKnown RBP2.19□□□□□ -2.06
NIC96YFR002W PRP3Q03338 469 aaPredicted RBP2.19□□□□□ -2.06
NIC96YFR002W BSC6Q08280 497 aa2.19□□□□□ -2.06
NIC96YFR002W ESA1Q08649 445 aa2.19□□□□□ -2.06
NIC96YFR002W SPE3Q12074 293 aaKnown RBP2.19□□□□□ -2.06
NIC96YFR002W REX3Q12090 404 aa2.19□□□□□ -2.06
NIC96YFR002W ATG29Q12092 213 aa2.19□□□□□ -2.06
NIC96YFR002W BRR1Q99177 341 aaPredicted RBP2.19□□□□□ -2.06
NIC96YFR002W AUS1Q08409 1394 aa2.18□□□□□ -2.06
NIC96YFR002W MDH1P17505 334 aaKnown RBP RIP-Chip data2.18□□□□□ -2.06not detected
NIC96YFR002W CPR2P23285 205 aa2.18□□□□□ -2.06
NIC96YFR002W BUD27P43573 796 aaKnown RBP RIP-Chip data2.18□□□□□ -2.06not detected
NIC96YFR002W YJL055WP47044 245 aa2.18□□□□□ -2.06
NIC96YFR002W PET130P47065 347 aa2.18□□□□□ -2.06
NIC96YFR002W OGG1P53397 376 aaPredicted RBP2.18□□□□□ -2.06
NIC96YFR002W SOV1Q04748 898 aa2.18□□□□□ -2.06
NIC96YFR002W RQC1Q05468 723 aaKnown RBP2.18□□□□□ -2.06
NIC96YFR002W YDR341CQ05506 607 aaKnown RBP2.18□□□□□ -2.06
NIC96YFR002W MMR1Q06324 491 aa2.18□□□□□ -2.06
NIC96YFR002W YLL032CQ07834 825 aaKnown RBP RIP-Chip data2.18□□□□□ -2.06not detected
NIC96YFR002W SKS1Q12505 502 aa2.18□□□□□ -2.06
NIC96YFR002W YDL007C-AQ2V2Q0 85 aa2.18□□□□□ -2.06
NIC96YFR002W AFI1Q99222 893 aa2.18□□□□□ -2.06
NIC96YFR002W TRX1P22217 103 aaKnown RBP2.18□□□□□ -2.06
NIC96YFR002W CPR4P25334 318 aa2.18□□□□□ -2.06
NIC96YFR002W PMT1P33775 817 aa2.18□□□□□ -2.06
NIC96YFR002W HEL1P36113 551 aa2.18□□□□□ -2.06
NIC96YFR002W SIF2P38262 535 aa2.18□□□□□ -2.06
NIC96YFR002W RRT2P38332 387 aa2.18□□□□□ -2.06
NIC96YFR002W PTH1P38876 190 aaKnown RBP2.18□□□□□ -2.06
NIC96YFR002W REE1P40893 198 aa2.18□□□□□ -2.06
NIC96YFR002W TRS85P46944 698 aa2.18□□□□□ -2.06
NIC96YFR002W RRN11Q04712 507 aa2.18□□□□□ -2.06
NIC96YFR002W TMC1Q08422 150 aaPredicted RBP2.18□□□□□ -2.06
NIC96YFR002W HHF1P02309 103 aaKnown RBP2.17□□□□□ -2.06
NIC96YFR002W RPL31BP0C2H9 113 aaKnown RBP2.17□□□□□ -2.06
NIC96YFR002W CLN3P13365 580 aa2.17□□□□□ -2.06
NIC96YFR002W PAD1P33751 242 aaKnown RBP RIP-Chip data2.17□□□□□ -2.06not detected
NIC96YFR002W SEC66P33754 206 aa2.17□□□□□ -2.06
NIC96YFR002W CMC1P36064 111 aa2.17□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 25 ms