RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB5	YLR260W	AIM44	Q99299	758 aa		5.25	□□□□□ -1.57
LCB5	YLR260W	VPS29	P38759	282 aa		5.24	□□□□□ -1.57
LCB5	YLR260W	GEA1	P47102	1408 aa	Predicted RBP	5.23	□□□□□ -1.57
LCB5	YLR260W	DNF3	Q12674	1656 aa		5.22	□□□□□ -1.57
LCB5	YLR260W	SEC7	P11075	2009 aa	Known RBP	5.22	□□□□□ -1.57
LCB5	YLR260W	RLF2	Q12495	606 aa		5.21	□□□□□ -1.58
LCB5	YLR260W	MAK11	P20484	414 aa	Known RBP	5.2	□□□□□ -1.58
LCB5	YLR260W	YSP2	Q06681	1438 aa		5.2	□□□□□ -1.58
LCB5	YLR260W	CAT8	P39113	1433 aa		5.19	□□□□□ -1.58
LCB5	YLR260W	SET1	P38827	1080 aa	Known RBP	5.19	□□□□□ -1.58
LCB5	YLR260W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	5.18	□□□□□ -1.58	not detected
LCB5	YLR260W	URN1	Q06525	465 aa	Known RBP	5.18	□□□□□ -1.58
LCB5	YLR260W	RGA2	Q06407	1009 aa		5.17	□□□□□ -1.58
LCB5	YLR260W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	5.17	□□□□□ -1.58	not detected
LCB5	YLR260W	STS1	P38637	319 aa		5.17	□□□□□ -1.58
LCB5	YLR260W	RPN1	P38764	993 aa	Known RBP	5.17	□□□□□ -1.58
LCB5	YLR260W	DBP1	P24784	617 aa	Known RBP	5.14	□□□□□ -1.59
LCB5	YLR260W	YOR238W	Q08634	303 aa		5.14	□□□□□ -1.59
LCB5	YLR260W	USO1	P25386	1790 aa		5.14	□□□□□ -1.59
LCB5	YLR260W	ORC1	P54784	914 aa	Predicted RBP	5.14	□□□□□ -1.59
LCB5	YLR260W	COQ8	P27697	501 aa		5.13	□□□□□ -1.59
LCB5	YLR260W	CKB1	P43639	278 aa		5.13	□□□□□ -1.59
LCB5	YLR260W	BNR1	P40450	1375 aa		5.13	□□□□□ -1.59
LCB5	YLR260W	YAP5	P40574	245 aa		5.12	□□□□□ -1.59
LCB5	YLR260W	YPR148C	Q06523	435 aa		5.12	□□□□□ -1.59
LCB5	YLR260W	EDS1	P38073	919 aa		5.09	□□□□□ -1.59
LCB5	YLR260W	PIB1	Q06651	286 aa		5.09	□□□□□ -1.59
LCB5	YLR260W	VMR1	P38735	1592 aa		5.09	□□□□□ -1.59
LCB5	YLR260W	VPS70	P47161	811 aa		5.09	□□□□□ -1.59
LCB5	YLR260W	IML1	P47170	1584 aa		5.08	□□□□□ -1.6
LCB5	YLR260W	NUP188	P52593	1655 aa	Known RBP	5.08	□□□□□ -1.6
LCB5	YLR260W	YAP3	P38749	330 aa		5.08	□□□□□ -1.6
LCB5	YLR260W	NOP53	Q12080	455 aa	Known RBP	5.07	□□□□□ -1.6
LCB5	YLR260W	YBL029C-A	Q3E756	94 aa		5.07	□□□□□ -1.6
LCB5	YLR260W	SRB8	P25648	1427 aa		5.07	□□□□□ -1.6
LCB5	YLR260W	MST1	P07236	462 aa		5.06	□□□□□ -1.6
LCB5	YLR260W	VMA1	P17255	1071 aa	Known RBP	5.05	□□□□□ -1.6
LCB5	YLR260W	MAK10	Q02197	733 aa		5.04	□□□□□ -1.6
LCB5	YLR260W	PTC3	P34221	468 aa	Known RBP	5.04	□□□□□ -1.6
LCB5	YLR260W	TYS1	P36421	394 aa	Known RBP	5.01	□□□□□ -1.61
LCB5	YLR260W	PDR5	P33302	1511 aa	Known RBP	5	□□□□□ -1.61
LCB5	YLR260W	SPB4	P25808	606 aa	Predicted RBP	5	□□□□□ -1.61
LCB5	YLR260W	YML020W	Q03722	664 aa		5	□□□□□ -1.61
LCB5	YLR260W	SAM3	Q08986	587 aa		5	□□□□□ -1.61
LCB5	YLR260W	HAP1	P0CE41	1502 aa		4.99	□□□□□ -1.61
LCB5	YLR260W	IPL1	P38991	367 aa		4.99	□□□□□ -1.61
LCB5	YLR260W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.98	□□□□□ -1.61
LCB5	YLR260W	PDR11	P40550	1411 aa		4.98	□□□□□ -1.61
LCB5	YLR260W	SSM4	P40318	1319 aa		4.98	□□□□□ -1.61
LCB5	YLR260W	GTT3	P39996	337 aa		4.98	□□□□□ -1.61
LCB5	YLR260W	BUD21	Q08492	214 aa	Predicted RBP	4.98	□□□□□ -1.61
LCB5	YLR260W	DSF2	P38213	736 aa		4.97	□□□□□ -1.61
LCB5	YLR260W	PBS2	P08018	668 aa		4.96	□□□□□ -1.61
LCB5	YLR260W	GRE2	Q12068	342 aa	Known RBP	4.96	□□□□□ -1.61
LCB5	YLR260W	REF2	P42073	533 aa	Predicted RBP	4.96	□□□□□ -1.62
LCB5	YLR260W	VNX1	P42839	908 aa		4.96	□□□□□ -1.62
LCB5	YLR260W	ATH1	P48016	1211 aa		4.96	□□□□□ -1.62
LCB5	YLR260W	GUT1	P32190	709 aa		4.95	□□□□□ -1.62
LCB5	YLR260W	NOP8	Q08287	484 aa	Predicted RBP	4.95	□□□□□ -1.62
LCB5	YLR260W	GCN2	P15442	1659 aa		4.94	□□□□□ -1.62
LCB5	YLR260W	THI12	P42883	340 aa		4.94	□□□□□ -1.62
LCB5	YLR260W	THI5	P43534	340 aa		4.94	□□□□□ -1.62
LCB5	YLR260W	THI11	P47183	340 aa		4.94	□□□□□ -1.62
LCB5	YLR260W	THI13	Q07748	340 aa		4.94	□□□□□ -1.62
LCB5	YLR260W	YOL036W	Q08206	761 aa		4.94	□□□□□ -1.62
LCB5	YLR260W	GYP5	Q12344	894 aa		4.94	□□□□□ -1.62
LCB5	YLR260W	IKI3	Q06706	1349 aa	Known RBP	4.94	□□□□□ -1.62
LCB5	YLR260W	YRB30	P53107	440 aa	Predicted RBP	4.92	□□□□□ -1.62
LCB5	YLR260W	TOP1	P04786	769 aa		4.92	□□□□□ -1.62
LCB5	YLR260W	SET4	P42948	560 aa		4.92	□□□□□ -1.62
LCB5	YLR260W	WSC3	Q12215	556 aa		4.92	□□□□□ -1.62
LCB5	YLR260W	SPP1	Q03012	353 aa		4.91	□□□□□ -1.62
LCB5	YLR260W	SOL3	P38858	249 aa		4.9	□□□□□ -1.62
LCB5	YLR260W	MAM3	Q12296	706 aa		4.9	□□□□□ -1.62
LCB5	YLR260W	NUP192	P47054	1683 aa		4.9	□□□□□ -1.62
LCB5	YLR260W	UBP14	P38237	781 aa	Known RBP	4.9	□□□□□ -1.63
LCB5	YLR260W	VHR2	P40041	505 aa		4.9	□□□□□ -1.63
LCB5	YLR260W	SLX8	P40072	274 aa		4.9	□□□□□ -1.63
LCB5	YLR260W	YGR273C	P53329	174 aa		4.9	□□□□□ -1.63
LCB5	YLR260W	MAK21	Q12176	1025 aa	Known RBP	4.9	□□□□□ -1.63
LCB5	YLR260W	MSB4	Q12317	492 aa		4.9	□□□□□ -1.63
LCB5	YLR260W	COX6	P00427	148 aa		4.89	□□□□□ -1.63
LCB5	YLR260W	DCW1	P36091	449 aa		4.89	□□□□□ -1.63
LCB5	YLR260W	SNU71	P53207	620 aa	Known RBP	4.89	□□□□□ -1.63
LCB5	YLR260W	YLR326W	Q06170	240 aa	Known RBP	4.89	□□□□□ -1.63
LCB5	YLR260W	IES2	P40154	320 aa		4.88	□□□□□ -1.63
LCB5	YLR260W	NST1	P53935	1240 aa		4.88	□□□□□ -1.63
LCB5	YLR260W	YDR090C	Q03193	310 aa		4.88	□□□□□ -1.63
LCB5	YLR260W	YMR196W	Q04336	1088 aa		4.88	□□□□□ -1.63
LCB5	YLR260W	KRE5	P22023	1365 aa		4.88	□□□□□ -1.63
LCB5	YLR260W	HTA1	P04911	132 aa	Known RBP	4.87	□□□□□ -1.63
LCB5	YLR260W	HTA2	P04912	132 aa		4.87	□□□□□ -1.63
LCB5	YLR260W	NUP42	P49686	430 aa	Known RBP	4.87	□□□□□ -1.63
LCB5	YLR260W	AIR2	Q12476	344 aa	Known RBP	4.87	□□□□□ -1.63
LCB5	YLR260W	CFT1	Q06632	1357 aa	Known RBP	4.87	□□□□□ -1.63
LCB5	YLR260W	YNR021W	P53723	404 aa	Known RBP	4.86	□□□□□ -1.63
LCB5	YLR260W	KEX1	P09620	729 aa		4.85	□□□□□ -1.63
LCB5	YLR260W	KIN1	P13185	1064 aa		4.85	□□□□□ -1.63
LCB5	YLR260W	NOP7	P53261	605 aa	Known RBP	4.85	□□□□□ -1.63
LCB5	YLR260W	BCK1	Q01389	1478 aa		4.85	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 16.1 ms