RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W KIN1P13185 1064 aa6.49□□□□□ -1.37
PRE9YGR135W YEL077CQ3E7X8 1277 aa6.49□□□□□ -1.37
PRE9YGR135W HGH1P48362 394 aaKnown RBP6.48□□□□□ -1.37
PRE9YGR135W RAS1P01119 309 aa6.47□□□□□ -1.37
PRE9YGR135W SDH2P21801 266 aa6.47□□□□□ -1.37
PRE9YGR135W GCD11P32481 527 aaKnown RBP6.46□□□□□ -1.38
PRE9YGR135W NUP42P49686 430 aaKnown RBP6.45□□□□□ -1.38
PRE9YGR135W SRC1Q03707 834 aa6.45□□□□□ -1.38
PRE9YGR135W TY1A-DR4O74302 440 aa6.44□□□□□ -1.38
PRE9YGR135W ERG12P07277 443 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-HP0C2I4 478 aaKnown RBP6.44□□□□□ -1.38
PRE9YGR135W TY1A-AP0CX57 440 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-PR1P0CX58 440 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-ORP0CX59 440 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-PR2P0CX60 440 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-DR5P0CX65 440 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-ER2P0CX66 440 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-GR3P0CX67 440 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-LR1P0CX68 440 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-MR2P0CX69 440 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-JR2P47099 440 aa6.44□□□□□ -1.38
PRE9YGR135W YNR021WP53723 404 aaKnown RBP6.44□□□□□ -1.38
PRE9YGR135W TY1A-DR1Q03856 440 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-ML1Q04706 440 aaKnown RBP6.44□□□□□ -1.38
PRE9YGR135W TY1A-BRQ12217 440 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-NL2Q12470 440 aa6.44□□□□□ -1.38
PRE9YGR135W TY1A-GR2Q12485 440 aa6.44□□□□□ -1.38
PRE9YGR135W SPT16P32558 1035 aaKnown RBP6.43□□□□□ -1.38
PRE9YGR135W SEC2P17065 759 aa6.42□□□□□ -1.38
PRE9YGR135W PAT1P25644 796 aaKnown RBP6.42□□□□□ -1.38
PRE9YGR135W KEX2P13134 814 aa6.4□□□□□ -1.38
PRE9YGR135W GLC3P32775 704 aa6.4□□□□□ -1.38
PRE9YGR135W TEA1P47988 759 aa6.4□□□□□ -1.38
PRE9YGR135W DIT2P21595 489 aa6.39□□□□□ -1.39
PRE9YGR135W RRN7P40992 514 aa6.39□□□□□ -1.39
PRE9YGR135W RTF1P53064 558 aa6.39□□□□□ -1.39
PRE9YGR135W INO80P53115 1489 aa6.36□□□□□ -1.39
PRE9YGR135W TRK1P12685 1235 aa6.36□□□□□ -1.39
PRE9YGR135W ERF2Q06551 359 aa6.36□□□□□ -1.39
PRE9YGR135W SIT4P20604 311 aa6.35□□□□□ -1.39
PRE9YGR135W YNL115CP53925 644 aa6.35□□□□□ -1.39
PRE9YGR135W AIM7Q12156 149 aa6.35□□□□□ -1.39
PRE9YGR135W CST6P40535 587 aa6.34□□□□□ -1.39
PRE9YGR135W LAM6Q08001 693 aa6.34□□□□□ -1.39
PRE9YGR135W NIS1P53939 407 aa6.33□□□□□ -1.4
PRE9YGR135W GUA1P38625 525 aaKnown RBP6.32□□□□□ -1.4
PRE9YGR135W BDP1P46678 594 aa6.31□□□□□ -1.4
PRE9YGR135W TUB4P53378 473 aa6.31□□□□□ -1.4
PRE9YGR135W FRK1Q03002 865 aaPredicted RBP6.31□□□□□ -1.4
PRE9YGR135W YMR196WQ04336 1088 aa6.31□□□□□ -1.4
PRE9YGR135W AGE1Q04412 482 aa6.31□□□□□ -1.4
PRE9YGR135W PAC1P39946 494 aaKnown RBP6.3□□□□□ -1.4
PRE9YGR135W ATF2P53296 535 aa6.3□□□□□ -1.4
PRE9YGR135W FPK1P53739 893 aa6.28□□□□□ -1.4
PRE9YGR135W YML020WQ03722 664 aa6.27□□□□□ -1.41
PRE9YGR135W MOD5P07884 428 aa6.26□□□□□ -1.41
PRE9YGR135W AIM44Q99299 758 aa6.26□□□□□ -1.41
PRE9YGR135W SLY41P22215 453 aa6.25□□□□□ -1.41
PRE9YGR135W HED1Q03937 162 aa6.25□□□□□ -1.41
PRE9YGR135W CDC4P07834 779 aa6.24□□□□□ -1.41
PRE9YGR135W AIR1P40507 360 aaKnown RBP6.24□□□□□ -1.41
PRE9YGR135W CLA4P48562 842 aa6.24□□□□□ -1.41
PRE9YGR135W KXD1P53158 218 aa6.24□□□□□ -1.41
PRE9YGR135W HST2P53686 357 aa6.24□□□□□ -1.41
PRE9YGR135W TFB3Q03290 321 aa6.23□□□□□ -1.41
PRE9YGR135W SLX8P40072 274 aa6.22□□□□□ -1.41
PRE9YGR135W HPC2Q01448 625 aa6.22□□□□□ -1.41
PRE9YGR135W TBF1Q02457 562 aa6.22□□□□□ -1.41
PRE9YGR135W SSA1P10591 642 aaKnown RBP6.21□□□□□ -1.42
PRE9YGR135W TPD3P31383 635 aa6.21□□□□□ -1.42
PRE9YGR135W BRE2P43132 505 aa6.21□□□□□ -1.42
PRE9YGR135W GCR2Q01722 534 aa6.21□□□□□ -1.42
PRE9YGR135W SKI3P17883 1432 aaKnown RBP6.21□□□□□ -1.42
PRE9YGR135W GLN1P32288 370 aaKnown RBP6.2□□□□□ -1.42
PRE9YGR135W BRL1P38770 471 aa6.2□□□□□ -1.42
PRE9YGR135W PUS6P53294 404 aa6.2□□□□□ -1.42
PRE9YGR135W MMP1Q12372 583 aa6.2□□□□□ -1.42
PRE9YGR135W GEF1P37020 779 aa6.19□□□□□ -1.42
PRE9YGR135W RRD1P40454 393 aaKnown RBP6.19□□□□□ -1.42
PRE9YGR135W BUB1P41695 1021 aaKnown RBP RIP-Chip data6.19□□□□□ -1.42not detected
PRE9YGR135W HXT10P43581 546 aa6.19□□□□□ -1.42
PRE9YGR135W PDC1P06169 563 aaKnown RBP6.18□□□□□ -1.42
PRE9YGR135W RPA14P50106 137 aa6.18□□□□□ -1.42
PRE9YGR135W ALR1Q08269 859 aa6.18□□□□□ -1.42
PRE9YGR135W TRM1P15565 570 aaKnown RBP6.17□□□□□ -1.42
PRE9YGR135W SCJ1P25303 377 aa6.17□□□□□ -1.42
PRE9YGR135W PUS5Q06244 254 aa6.17□□□□□ -1.42
PRE9YGR135W YDL206WQ12424 762 aa6.17□□□□□ -1.42
PRE9YGR135W SUB2Q07478 446 aaKnown RBP6.16□□□□□ -1.42
PRE9YGR135W NOP8Q08287 484 aaPredicted RBP6.16□□□□□ -1.42
PRE9YGR135W PKC1P24583 1151 aa6.15□□□□□ -1.42
PRE9YGR135W YJL007CP47080 104 aa6.15□□□□□ -1.42
PRE9YGR135W SYH1Q02875 849 aaKnown RBP6.15□□□□□ -1.42
PRE9YGR135W YPR097WQ06839 1073 aa6.15□□□□□ -1.42
PRE9YGR135W ESS1P22696 170 aa6.14□□□□□ -1.43
PRE9YGR135W MET32Q12041 191 aa6.14□□□□□ -1.43
PRE9YGR135W SSA2P10592 639 aaKnown RBP6.13□□□□□ -1.43
PRE9YGR135W AFT1P22149 690 aa6.13□□□□□ -1.43
PRE9YGR135W BIM1P40013 344 aa6.13□□□□□ -1.43
PRE9YGR135W HST3P53687 447 aa6.13□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 43.8 ms